Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS14005

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,131,678	+				-1.1
3,131,679	-				-1.6
3,131,679	-				-1.6
3,131,777	+				+1.5
3,131,777	+				+1.9
3,131,777	+		HGI48_RS14000	0.18	-0.1
3,131,879	+		HGI48_RS14000	0.28	-2.3
3,131,880	-		HGI48_RS14000	0.28	-0.3
3,131,966	+		HGI48_RS14000	0.37	+0.1
3,131,966	+		HGI48_RS14000	0.37	+0.3
3,131,966	+		HGI48_RS14000	0.37	+0.5
3,131,967	-		HGI48_RS14000	0.37	-0.8
3,131,967	-		HGI48_RS14000	0.37	+1.9
3,131,967	-		HGI48_RS14000	0.37	+0.9
3,131,967	-		HGI48_RS14000	0.37	+1.5
3,132,010	+		HGI48_RS14000	0.41	-2.1
3,132,096	+				+3.5
3,132,096	+		HGI48_RS14000	0.50	+0.4
3,132,097	-				+4.2
3,132,188	+				-0.3
3,132,189	-		HGI48_RS14000	0.59	-1.9
3,132,217	+		HGI48_RS14000	0.61	+1.3
3,132,442	+		HGI48_RS14000	0.83	+0.5
3,132,442	+		HGI48_RS14000	0.83	-1.6
3,132,443	-		HGI48_RS14000	0.84	+1.6
3,132,446	+		HGI48_RS14000	0.84	+1.0
3,132,446	+		HGI48_RS14000	0.84	-1.0
3,132,446	+		HGI48_RS14000	0.84	+0.4
3,132,447	-		HGI48_RS14000	0.84	-0.0
3,132,447	-		HGI48_RS14000	0.84	-1.9
3,132,447	-		HGI48_RS14000	0.84	-2.1
3,132,479	-		HGI48_RS14000	0.87	+1.7
3,132,493	-		HGI48_RS14000	0.88	-0.6
3,132,493	-		HGI48_RS14000	0.88	-2.1
3,132,493	-		HGI48_RS14000	0.88	-1.6
3,132,584	-				+0.9
3,132,601	+				-1.3
3,132,602	-				-1.6
3,132,620	-				-2.6
3,132,669	-				+1.0
3,132,678	+				+1.5
3,132,678	+				+0.4
3,132,678	+				+2.7
3,132,678	+				-0.5
3,132,679	-				-2.1
3,132,891	+		HGI48_RS14005	0.29	-2.3
3,132,891	+		HGI48_RS14005	0.29	-1.6
3,132,891	+		HGI48_RS14005	0.29	-0.5
3,132,893	+				+2.0
3,132,893	+		HGI48_RS14005	0.29	+0.9
3,132,893	+		HGI48_RS14005	0.29	+0.2
3,132,893	+		HGI48_RS14005	0.29	-1.1
3,132,893	+		HGI48_RS14005	0.29	+1.4
3,132,893	+		HGI48_RS14005	0.29	+1.3
3,132,893	+		HGI48_RS14005	0.29	-3.0
3,132,894	-		HGI48_RS14005	0.29	+1.6
3,132,894	-		HGI48_RS14005	0.29	+2.4
3,132,894	-		HGI48_RS14005	0.29	-2.1
3,132,894	-				-0.9
3,132,923	+		HGI48_RS14005	0.33	-2.9
3,132,923	+		HGI48_RS14005	0.33	+1.3
3,132,923	+		HGI48_RS14005	0.33	+0.6
3,132,924	-		HGI48_RS14005	0.33	-0.0
3,132,924	-		HGI48_RS14005	0.33	-2.1
3,132,924	-				+1.9
3,132,924	-		HGI48_RS14005	0.33	+1.3
3,132,924	-		HGI48_RS14005	0.33	+0.9
3,132,924	-		HGI48_RS14005	0.33	+0.8
3,132,927	+		HGI48_RS14005	0.33	-0.0
3,132,927	+		HGI48_RS14005	0.33	+0.4
3,132,928	-		HGI48_RS14005	0.33	+0.0
3,132,940	+		HGI48_RS14005	0.35	-1.6
3,133,005	+		HGI48_RS14005	0.43	-0.3
3,133,005	+		HGI48_RS14005	0.43	-3.2
3,133,005	+				-0.9
3,133,006	-				-0.9
3,133,006	-		HGI48_RS14005	0.43	-1.9
3,133,006	-				+1.5
3,133,008	+		HGI48_RS14005	0.44	-0.9
3,133,008	+		HGI48_RS14005	0.44	-0.2
3,133,008	+		HGI48_RS14005	0.44	-0.0
3,133,119	+		HGI48_RS14005	0.58	+0.7
3,133,119	+		HGI48_RS14005	0.58	-0.3
3,133,192	-		HGI48_RS14005	0.67	+1.0
3,133,195	-		HGI48_RS14005	0.67	-2.3
3,133,195	-		HGI48_RS14005	0.67	-1.6
3,133,197	+		HGI48_RS14005	0.68	-1.3
3,133,198	-		HGI48_RS14005	0.68	+0.3
3,133,198	-		HGI48_RS14005	0.68	-2.9
3,133,198	-				+2.1
3,133,293	+		HGI48_RS14005	0.80	-2.1
3,133,324	+		HGI48_RS14005	0.84	-2.1
3,133,324	+		HGI48_RS14005	0.84	+0.0
3,133,325	-		HGI48_RS14005	0.84	-1.6
3,133,325	-		HGI48_RS14005	0.84	-2.1
3,133,325	-		HGI48_RS14005	0.84	-2.3
3,133,425	+				-0.5
3,133,449	+				-1.1
3,133,449	+				-0.4
3,133,449	+				-2.4
3,133,450	-				-0.9
3,133,450	-				+1.9
3,133,450	-				-1.0
3,133,450	-				-2.1
3,133,450	-				+1.2
3,133,450	-				+1.3
3,133,463	+				+0.5
3,133,464	-				+0.3
3,133,466	+				+1.9
3,133,498	+				-0.3
3,133,498	+				+1.3
3,133,498	+				-1.4
3,133,499	-				+0.5
3,133,499	-				+0.4
3,133,502	+				+0.1
3,133,502	+				-0.3
3,133,503	-				+0.7
3,133,503	-				+2.2
3,133,503	-				-0.9
3,133,503	-				+1.0
3,133,526	-				-2.4
3,133,526	-				+0.7
3,133,561	+				-1.9
3,133,561	+				-1.9
3,133,561	+				+0.2
3,133,561	+				-3.3
3,133,582	+				-2.1
3,133,714	-		HGI48_RS14010	0.17	-2.3
3,133,744	+		HGI48_RS14010	0.20	-2.9
3,133,744	+		HGI48_RS14010	0.20	-1.9
3,133,744	+		HGI48_RS14010	0.20	-2.1
3,133,745	-				-0.9
3,133,745	-		HGI48_RS14010	0.20	+0.4
3,133,745	-		HGI48_RS14010	0.20	+0.5
3,133,745	-		HGI48_RS14010	0.20	-1.3
3,133,745	-		HGI48_RS14010	0.20	-0.1
3,133,748	+		HGI48_RS14010	0.21	-0.2
3,133,749	-		HGI48_RS14010	0.21	-1.9
3,133,777	+		HGI48_RS14010	0.23	+1.4
3,133,791	+		HGI48_RS14010	0.24	+0.4
3,133,791	+		HGI48_RS14010	0.24	+1.0
3,133,791	+		HGI48_RS14010	0.24	-2.4
3,133,791	+		HGI48_RS14010	0.24	-2.1
3,133,791	+		HGI48_RS14010	0.24	+0.5
3,133,792	-		HGI48_RS14010	0.25	-1.3
3,133,792	-		HGI48_RS14010	0.25	-1.3
3,133,834	+		HGI48_RS14010	0.28	-2.1
3,133,834	+		HGI48_RS14010	0.28	+1.0
3,133,845	+		HGI48_RS14010	0.29	+0.7
3,133,846	-		HGI48_RS14010	0.29	-1.3
3,133,846	-		HGI48_RS14010	0.29	+0.1
3,133,850	+		HGI48_RS14010	0.30	+0.2
3,133,871	-		HGI48_RS14010	0.32	-2.1
3,133,871	-		HGI48_RS14010	0.32	-1.9
3,133,876	+		HGI48_RS14010	0.32	-2.1
3,133,876	+		HGI48_RS14010	0.32	+1.3
3,133,877	-		HGI48_RS14010	0.32	+1.5
3,133,911	-				+2.9
3,133,987	-		HGI48_RS14010	0.42	+0.5
3,133,987	-		HGI48_RS14010	0.42	+1.1
3,134,033	+		HGI48_RS14010	0.47	-3.3
3,134,033	+		HGI48_RS14010	0.47	-0.5
3,134,034	-		HGI48_RS14010	0.47	+1.0
3,134,074	+		HGI48_RS14010	0.50	+1.6
3,134,196	+		HGI48_RS14010	0.62	-2.7
3,134,196	+		HGI48_RS14010	0.62	-3.0
3,134,197	-		HGI48_RS14010	0.62	+0.5
3,134,197	-		HGI48_RS14010	0.62	-2.9
3,134,286	+		HGI48_RS14010	0.70	-1.6
3,134,286	+		HGI48_RS14010	0.70	-1.3
3,134,286	+		HGI48_RS14010	0.70	-0.1
3,134,287	-				-0.3
3,134,287	-		HGI48_RS14010	0.70	-2.6
3,134,287	-		HGI48_RS14010	0.70	-1.3
3,134,287	-		HGI48_RS14010	0.70	+1.0
3,134,304	+		HGI48_RS14010	0.71	+0.3
3,134,304	+		HGI48_RS14010	0.71	-1.6
3,134,304	+				-0.3
3,134,305	-		HGI48_RS14010	0.72	+0.0
3,134,305	-		HGI48_RS14010	0.72	-1.4
3,134,319	+		HGI48_RS14010	0.73	+0.2
3,134,319	+				+1.7
3,134,320	-		HGI48_RS14010	0.73	-1.9
3,134,320	-		HGI48_RS14010	0.73	-1.3
3,134,320	-		HGI48_RS14010	0.73	+2.3
3,134,325	+		HGI48_RS14010	0.73	-1.6
3,134,325	+				-0.9
3,134,392	+				+1.9
3,134,392	+		HGI48_RS14010	0.79	-2.3
3,134,393	-		HGI48_RS14010	0.80	-2.1
3,134,434	-				+0.7
3,134,434	-		HGI48_RS14010	0.83	+0.3