Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS08180

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,755,741	-				-0.9
1,755,742	+				-2.3
1,755,751	-				-1.9
1,755,755	-				+0.1
1,755,755	-				-1.1
1,755,790	+				-1.0
1,755,790	+				+0.7
1,755,790	+				-1.7
1,755,790	+				+0.2
1,755,791	-				+0.3
1,755,793	-				-0.9
1,755,805	-				-0.2
1,755,829	+				-1.1
1,755,833	-				-0.0
1,755,833	-				+3.3
1,755,869	-				-0.9
1,755,901	+		HGI48_RS08175	0.15	-0.3
1,755,901	+		HGI48_RS08175	0.15	+0.7
1,755,902	-		HGI48_RS08175	0.15	+2.0
1,755,902	-		HGI48_RS08175	0.15	+2.1
1,755,939	+		HGI48_RS08175	0.19	-1.9
1,755,939	+		HGI48_RS08175	0.19	-1.3
1,755,954	-		HGI48_RS08175	0.21	-1.7
1,755,954	-		HGI48_RS08175	0.21	-1.3
1,755,959	+		HGI48_RS08175	0.22	-1.7
1,755,959	+		HGI48_RS08175	0.22	+0.4
1,755,959	+		HGI48_RS08175	0.22	+1.1
1,755,960	-		HGI48_RS08175	0.22	+0.5
1,755,960	-		HGI48_RS08175	0.22	-0.3
1,755,960	-		HGI48_RS08175	0.22	-2.8
1,755,960	-		HGI48_RS08175	0.22	-1.9
1,756,015	-		HGI48_RS08175	0.28	+1.2
1,756,068	+		HGI48_RS08175	0.34	-1.4
1,756,076	-		HGI48_RS08175	0.35	-2.3
1,756,076	-		HGI48_RS08175	0.35	-0.2
1,756,134	-		HGI48_RS08175	0.41	-2.9
1,756,174	-		HGI48_RS08175	0.45	-2.1
1,756,207	-				-0.9
1,756,277	-		HGI48_RS08175	0.57	+0.0
1,756,305	+		HGI48_RS08175	0.60	+0.7
1,756,363	-		HGI48_RS08175	0.66	+2.6
1,756,367	+		HGI48_RS08175	0.67	+1.9
1,756,367	+		HGI48_RS08175	0.67	-0.0
1,756,368	-		HGI48_RS08175	0.67	+2.4
1,756,368	-		HGI48_RS08175	0.67	+1.0
1,756,369	+		HGI48_RS08175	0.67	+0.2
1,756,369	+		HGI48_RS08175	0.67	-1.3
1,756,370	-		HGI48_RS08175	0.67	-1.2
1,756,370	-		HGI48_RS08175	0.67	+0.5
1,756,370	-		HGI48_RS08175	0.67	-2.5
1,756,370	-		HGI48_RS08175	0.67	-1.9
1,756,428	+		HGI48_RS08175	0.74	-1.7
1,756,430	+		HGI48_RS08175	0.74	-2.1
1,756,467	+		HGI48_RS08175	0.78	+1.5
1,756,467	+				-0.3
1,756,467	+		HGI48_RS08175	0.78	+0.3
1,756,468	-		HGI48_RS08175	0.78	-3.2
1,756,516	+		HGI48_RS08175	0.83	-0.2
1,756,525	+		HGI48_RS08175	0.84	-1.7
1,756,525	+		HGI48_RS08175	0.84	-1.9
1,756,554	+		HGI48_RS08175	0.87	-0.3
1,756,559	+		HGI48_RS08175	0.88	-0.1
1,756,559	+		HGI48_RS08175	0.88	-0.3
1,756,559	+		HGI48_RS08175	0.88	-1.3
1,756,560	-		HGI48_RS08175	0.88	+0.7
1,756,590	-				+0.7
1,756,590	-				-0.5
1,756,590	-				-1.3
1,756,590	-				+0.7
1,756,590	-				-2.3
1,756,591	+				+1.3
1,756,592	-				-2.9
1,756,648	+				+1.8
1,756,648	+				+1.5
1,756,684	+				-0.5
1,756,685	-				+1.4
1,756,739	+				-1.3
1,756,763	+				+1.7
1,756,803	-		HGI48_RS08180	0.10	-0.4
1,756,831	+		HGI48_RS08180	0.13	+1.2
1,756,831	+		HGI48_RS08180	0.13	+1.5
1,756,831	+		HGI48_RS08180	0.13	+0.3
1,756,831	+		HGI48_RS08180	0.13	-1.7
1,756,858	-		HGI48_RS08180	0.16	+1.5
1,756,911	+		HGI48_RS08180	0.21	+0.2
1,756,921	+		HGI48_RS08180	0.22	-1.9
1,757,007	+		HGI48_RS08180	0.31	+1.0
1,757,007	+		HGI48_RS08180	0.31	-0.2
1,757,122	+		HGI48_RS08180	0.43	-0.6
1,757,123	-		HGI48_RS08180	0.43	+1.8
1,757,157	+		HGI48_RS08180	0.46	-1.7
1,757,162	+		HGI48_RS08180	0.47	+0.7
1,757,188	-		HGI48_RS08180	0.50	+2.5
1,757,191	+		HGI48_RS08180	0.50	+1.2
1,757,191	+		HGI48_RS08180	0.50	-2.7
1,757,191	+				-0.9
1,757,192	-				-0.9
1,757,192	-		HGI48_RS08180	0.50	-1.0
1,757,212	+		HGI48_RS08180	0.52	+1.7
1,757,213	-		HGI48_RS08180	0.52	-1.7
1,757,213	-				+0.7
1,757,213	-		HGI48_RS08180	0.52	-0.1
1,757,232	+				-0.3
1,757,258	+				+2.0
1,757,278	+		HGI48_RS08180	0.59	-2.5
1,757,278	+		HGI48_RS08180	0.59	-2.3
1,757,278	+		HGI48_RS08180	0.59	-0.4
1,757,279	-				+2.8
1,757,404	-		HGI48_RS08180	0.72	+0.7
1,757,425	+		HGI48_RS08180	0.74	+0.4
1,757,426	-				-0.3
1,757,426	-		HGI48_RS08180	0.74	+0.7
1,757,426	-		HGI48_RS08180	0.74	-2.7
1,757,426	-		HGI48_RS08180	0.74	-2.3
1,757,457	+		HGI48_RS08180	0.77	-1.7
1,757,457	+		HGI48_RS08180	0.77	-1.7
1,757,458	-		HGI48_RS08180	0.77	+0.7
1,757,463	+		HGI48_RS08180	0.78	+1.0
1,757,475	+		HGI48_RS08180	0.79	-0.4
1,757,536	+		HGI48_RS08180	0.85	+0.4
1,757,536	+		HGI48_RS08180	0.85	-3.3
1,757,537	-				-0.9
1,757,653	+				+1.0
1,757,654	-				-1.3
1,757,654	-				-0.9
1,757,654	-				+0.8
1,757,683	-				-1.9
1,757,686	+				-1.3
1,757,686	+				-2.1
1,757,686	+				-2.3
1,757,686	+				-2.5
1,757,687	-				-0.9
1,757,687	-				-0.9
1,757,688	+				+0.3
1,757,688	+				-1.1
1,757,707	+				-0.0
1,757,708	-				-0.7
1,757,708	-				+1.2
1,757,715	+				-0.6
1,757,725	-				-1.7
1,757,727	-				-0.9
1,757,766	+				-0.3
1,757,766	+				-1.7
1,757,766	+				-1.7
1,757,766	+				-0.1
1,757,767	-				-0.8
1,757,770	+				+0.9
1,757,771	-				+1.9
1,757,822	+				+1.2
1,757,846	-				-0.9
1,757,856	+				-0.8
1,757,856	+				-3.5
1,757,856	+				-2.3
1,757,857	-				-1.7
1,757,895	+				-0.8
1,758,014	+				+0.2
1,758,115	-				-0.1
1,758,181	-		HGI48_RS08185	0.15	-2.1
1,758,295	+		HGI48_RS08185	0.37	-2.7
1,758,295	+		HGI48_RS08185	0.37	-2.8
1,758,296	-		HGI48_RS08185	0.37	-1.9
1,758,318	+		HGI48_RS08185	0.42	-1.1
1,758,318	+		HGI48_RS08185	0.42	-1.3
1,758,319	-		HGI48_RS08185	0.42	-0.4
1,758,319	-		HGI48_RS08185	0.42	-1.3
1,758,338	-		HGI48_RS08185	0.45	+0.3
1,758,358	+		HGI48_RS08185	0.49	-2.3
1,758,359	-		HGI48_RS08185	0.49	-2.1
1,758,359	-		HGI48_RS08185	0.49	+0.4
1,758,359	-		HGI48_RS08185	0.49	+1.8
1,758,394	-		HGI48_RS08185	0.56	-0.3
1,758,410	+		HGI48_RS08185	0.59	-2.7
1,758,417	-		HGI48_RS08185	0.60	+0.5
1,758,417	-		HGI48_RS08185	0.60	-1.7
1,758,445	+		HGI48_RS08185	0.66	-1.3
1,758,445	+		HGI48_RS08185	0.66	-1.7
1,758,446	-		HGI48_RS08185	0.66	+0.5
1,758,446	-		HGI48_RS08185	0.66	-1.7
1,758,446	-		HGI48_RS08185	0.66	-2.9
1,758,446	-		HGI48_RS08185	0.66	-1.7
1,758,514	+		HGI48_RS08185	0.79	-1.9
1,758,514	+		HGI48_RS08185	0.79	-0.5
1,758,514	+		HGI48_RS08185	0.79	+2.2
1,758,514	+		HGI48_RS08185	0.79	+1.4
1,758,515	-				+2.8
1,758,515	-		HGI48_RS08185	0.79	+1.7
1,758,515	-		HGI48_RS08185	0.79	-2.9
1,758,529	+		HGI48_RS08185	0.82	-1.7
1,758,530	-		HGI48_RS08185	0.82	+0.3
1,758,582	-				-3.3
1,758,640	-				-0.5