Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04760 and HGI48_RS04765 are separated by 231 nucleotides HGI48_RS04765 and HGI48_RS04770 are separated by 67 nucleotides HGI48_RS04770 and HGI48_RS04775 are separated by 70 nucleotides
HGI48_RS04760: HGI48_RS04760 - hypothetical protein, at 997,077 to 999,779
_RS04760
HGI48_RS04765: HGI48_RS04765 - hypothetical protein, at 1,000,011 to 1,000,655
_RS04765
HGI48_RS04770: HGI48_RS04770 - acyl carrier protein, at 1,000,723 to 1,000,968
_RS04770
HGI48_RS04775: HGI48_RS04775 - nucleotidyltransferase family protein, at 1,001,039 to 1,002,079
_RS04775
Position (kb) 1000
1001 Strain fitness (log2 ratio) -2
-1
0
1
2 at 999.026 kb on + strand, within HGI48_RS04760 at 999.185 kb on + strand, within HGI48_RS04760 at 999.185 kb on + strand at 999.185 kb on + strand, within HGI48_RS04760 at 999.186 kb on - strand, within HGI48_RS04760 at 999.186 kb on - strand, within HGI48_RS04760 at 999.231 kb on + strand, within HGI48_RS04760 at 999.235 kb on + strand, within HGI48_RS04760 at 999.236 kb on - strand, within HGI48_RS04760 at 999.248 kb on + strand, within HGI48_RS04760 at 999.252 kb on - strand, within HGI48_RS04760 at 999.367 kb on + strand at 999.562 kb on + strand at 999.562 kb on + strand at 999.689 kb on + strand at 999.760 kb on - strand at 999.798 kb on + strand at 1000.164 kb on - strand, within HGI48_RS04765 at 1000.485 kb on + strand, within HGI48_RS04765 at 1000.489 kb on - strand, within HGI48_RS04765 at 1000.541 kb on - strand, within HGI48_RS04765 at 1000.662 kb on - strand at 1000.989 kb on + strand at 1001.142 kb on + strand at 1001.302 kb on - strand, within HGI48_RS04775 at 1001.325 kb on + strand, within HGI48_RS04775 at 1001.326 kb on - strand, within HGI48_RS04775 at 1001.492 kb on + strand, within HGI48_RS04775 at 1001.492 kb on + strand, within HGI48_RS04775 at 1001.492 kb on + strand at 1001.492 kb on + strand, within HGI48_RS04775 at 1001.496 kb on + strand at 1001.573 kb on + strand, within HGI48_RS04775 at 1001.573 kb on + strand, within HGI48_RS04775
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 999,026 + HGI48_RS04760 0.72 -1.7 999,185 + HGI48_RS04760 0.78 -2.6 999,185 + -0.7 999,185 + HGI48_RS04760 0.78 -2.6 999,186 - HGI48_RS04760 0.78 -0.5 999,186 - HGI48_RS04760 0.78 -1.7 999,231 + HGI48_RS04760 0.80 -1.4 999,235 + HGI48_RS04760 0.80 +0.9 999,236 - HGI48_RS04760 0.80 +0.5 999,248 + HGI48_RS04760 0.80 -0.6 999,252 - HGI48_RS04760 0.80 -1.1 999,367 + -0.7 999,562 + +1.9 999,562 + -1.9 999,689 + +0.1 999,760 - -2.1 999,798 + -2.1 1,000,164 - HGI48_RS04765 0.24 +1.7 1,000,485 + HGI48_RS04765 0.73 -1.4 1,000,489 - HGI48_RS04765 0.74 -1.7 1,000,541 - HGI48_RS04765 0.82 -0.4 1,000,662 - -1.1 1,000,989 + +1.1 1,001,142 + +0.5 1,001,302 - HGI48_RS04775 0.25 +0.2 1,001,325 + HGI48_RS04775 0.27 -1.2 1,001,326 - HGI48_RS04775 0.28 +0.4 1,001,492 + HGI48_RS04775 0.44 -2.4 1,001,492 + HGI48_RS04775 0.44 -2.3 1,001,492 + -0.7 1,001,492 + HGI48_RS04775 0.44 -2.1 1,001,496 + -0.1 1,001,573 + HGI48_RS04775 0.51 -0.0 1,001,573 + HGI48_RS04775 0.51 -0.1
Or see this region's nucleotide sequence