Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04585 and HGI48_RS04590 are separated by 139 nucleotides HGI48_RS04590 and HGI48_RS04595 are separated by 333 nucleotides HGI48_RS04595 and HGI48_RS04600 are separated by 279 nucleotides
HGI48_RS04585: HGI48_RS04585 - ABC transporter substrate-binding protein, at 960,898 to 962,193
_RS04585
HGI48_RS04590: HGI48_RS04590 - multidrug efflux MFS transporter, at 962,333 to 963,526
_RS04590
HGI48_RS04595: HGI48_RS04595 - stress response protein AzuC, at 963,860 to 963,946
_RS04595
HGI48_RS04600: HGI48_RS04600 - hypothetical protein, at 964,226 to 964,849
_RS04600
Position (kb) 962
963
964 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 961.415 kb on + strand, within HGI48_RS04585 at 961.415 kb on + strand, within HGI48_RS04585 at 961.415 kb on + strand, within HGI48_RS04585 at 961.415 kb on + strand, within HGI48_RS04585 at 961.415 kb on + strand, within HGI48_RS04585 at 961.416 kb on - strand, within HGI48_RS04585 at 961.416 kb on - strand, within HGI48_RS04585 at 961.416 kb on - strand, within HGI48_RS04585 at 961.416 kb on - strand at 961.475 kb on - strand, within HGI48_RS04585 at 961.475 kb on - strand at 961.700 kb on + strand, within HGI48_RS04585 at 961.739 kb on + strand, within HGI48_RS04585 at 961.740 kb on - strand at 961.928 kb on + strand, within HGI48_RS04585 at 962.021 kb on + strand, within HGI48_RS04585 at 962.021 kb on + strand, within HGI48_RS04585 at 962.023 kb on + strand, within HGI48_RS04585 at 962.023 kb on + strand, within HGI48_RS04585 at 962.023 kb on + strand, within HGI48_RS04585 at 962.023 kb on + strand, within HGI48_RS04585 at 962.023 kb on + strand, within HGI48_RS04585 at 962.023 kb on + strand, within HGI48_RS04585 at 962.024 kb on - strand, within HGI48_RS04585 at 962.024 kb on - strand, within HGI48_RS04585 at 962.024 kb on - strand, within HGI48_RS04585 at 962.024 kb on - strand, within HGI48_RS04585 at 962.024 kb on - strand, within HGI48_RS04585 at 962.024 kb on - strand at 962.193 kb on + strand at 962.193 kb on + strand at 962.193 kb on + strand at 962.193 kb on + strand at 962.193 kb on + strand at 962.194 kb on - strand at 962.220 kb on + strand at 962.221 kb on - strand at 962.221 kb on - strand at 962.221 kb on - strand at 962.497 kb on + strand, within HGI48_RS04590 at 962.497 kb on + strand, within HGI48_RS04590 at 962.497 kb on + strand, within HGI48_RS04590 at 962.498 kb on - strand, within HGI48_RS04590 at 962.509 kb on + strand, within HGI48_RS04590 at 962.535 kb on + strand, within HGI48_RS04590 at 962.535 kb on + strand at 962.536 kb on - strand, within HGI48_RS04590 at 962.536 kb on - strand, within HGI48_RS04590 at 962.777 kb on - strand, within HGI48_RS04590 at 962.788 kb on + strand at 962.789 kb on - strand, within HGI48_RS04590 at 962.789 kb on - strand, within HGI48_RS04590 at 962.816 kb on - strand, within HGI48_RS04590 at 962.986 kb on + strand, within HGI48_RS04590 at 963.001 kb on + strand, within HGI48_RS04590 at 963.002 kb on - strand, within HGI48_RS04590 at 963.080 kb on + strand, within HGI48_RS04590 at 963.183 kb on + strand at 963.183 kb on + strand, within HGI48_RS04590 at 963.432 kb on + strand at 963.432 kb on + strand at 963.433 kb on - strand at 963.433 kb on - strand at 963.433 kb on - strand at 963.589 kb on + strand at 963.589 kb on + strand at 963.603 kb on - strand at 963.606 kb on - strand at 963.606 kb on - strand at 963.653 kb on + strand at 963.757 kb on + strand at 963.875 kb on - strand, within HGI48_RS04595 at 963.880 kb on - strand, within HGI48_RS04595 at 963.903 kb on - strand, within HGI48_RS04595 at 963.903 kb on - strand, within HGI48_RS04595 at 963.903 kb on - strand, within HGI48_RS04595 at 963.915 kb on - strand, within HGI48_RS04595 at 963.944 kb on + strand at 963.944 kb on + strand at 963.945 kb on - strand at 963.945 kb on - strand at 963.968 kb on + strand at 964.014 kb on + strand at 964.014 kb on + strand at 964.014 kb on + strand at 964.015 kb on - strand at 964.015 kb on - strand at 964.047 kb on + strand at 964.047 kb on + strand at 964.110 kb on + strand at 964.130 kb on - strand at 964.153 kb on - strand at 964.153 kb on - strand at 964.162 kb on - strand at 964.162 kb on - strand at 964.165 kb on + strand at 964.165 kb on + strand at 964.166 kb on - strand at 964.166 kb on - strand at 964.166 kb on - strand at 964.166 kb on - strand at 964.166 kb on - strand at 964.166 kb on - strand at 964.170 kb on + strand at 964.170 kb on + strand at 964.180 kb on + strand at 964.180 kb on + strand at 964.180 kb on + strand at 964.181 kb on - strand at 964.186 kb on + strand at 964.186 kb on + strand at 964.186 kb on + strand at 964.186 kb on + strand at 964.186 kb on + strand at 964.187 kb on - strand at 964.187 kb on - strand at 964.187 kb on - strand at 964.187 kb on - strand at 964.247 kb on + strand at 964.247 kb on + strand at 964.247 kb on + strand at 964.248 kb on - strand at 964.248 kb on - strand at 964.248 kb on - strand at 964.249 kb on + strand at 964.249 kb on + strand at 964.249 kb on + strand at 964.249 kb on + strand at 964.249 kb on + strand at 964.249 kb on + strand at 964.250 kb on - strand at 964.250 kb on - strand at 964.250 kb on - strand at 964.250 kb on - strand at 964.318 kb on + strand, within HGI48_RS04600 at 964.322 kb on + strand, within HGI48_RS04600 at 964.322 kb on + strand, within HGI48_RS04600 at 964.322 kb on + strand, within HGI48_RS04600 at 964.322 kb on + strand, within HGI48_RS04600 at 964.322 kb on + strand, within HGI48_RS04600 at 964.322 kb on + strand, within HGI48_RS04600 at 964.323 kb on - strand, within HGI48_RS04600 at 964.323 kb on - strand, within HGI48_RS04600 at 964.323 kb on - strand, within HGI48_RS04600 at 964.323 kb on - strand, within HGI48_RS04600 at 964.323 kb on - strand, within HGI48_RS04600 at 964.323 kb on - strand, within HGI48_RS04600 at 964.323 kb on - strand, within HGI48_RS04600 at 964.324 kb on + strand, within HGI48_RS04600 at 964.324 kb on + strand, within HGI48_RS04600 at 964.325 kb on - strand, within HGI48_RS04600 at 964.325 kb on - strand, within HGI48_RS04600 at 964.356 kb on + strand at 964.356 kb on + strand, within HGI48_RS04600 at 964.356 kb on + strand, within HGI48_RS04600 at 964.356 kb on + strand, within HGI48_RS04600 at 964.356 kb on + strand, within HGI48_RS04600 at 964.356 kb on + strand, within HGI48_RS04600 at 964.356 kb on + strand, within HGI48_RS04600 at 964.357 kb on - strand, within HGI48_RS04600 at 964.357 kb on - strand, within HGI48_RS04600 at 964.357 kb on - strand, within HGI48_RS04600 at 964.357 kb on - strand, within HGI48_RS04600 at 964.357 kb on - strand, within HGI48_RS04600 at 964.357 kb on - strand, within HGI48_RS04600 at 964.357 kb on - strand, within HGI48_RS04600 at 964.358 kb on + strand, within HGI48_RS04600 at 964.358 kb on + strand, within HGI48_RS04600 at 964.359 kb on - strand, within HGI48_RS04600 at 964.390 kb on - strand, within HGI48_RS04600 at 964.390 kb on - strand, within HGI48_RS04600 at 964.453 kb on + strand, within HGI48_RS04600 at 964.472 kb on + strand, within HGI48_RS04600 at 964.473 kb on - strand, within HGI48_RS04600 at 964.475 kb on + strand, within HGI48_RS04600 at 964.475 kb on + strand, within HGI48_RS04600 at 964.498 kb on + strand, within HGI48_RS04600
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 961,415 + HGI48_RS04585 0.40 -2.1 961,415 + HGI48_RS04585 0.40 +1.6 961,415 + HGI48_RS04585 0.40 +0.8 961,415 + HGI48_RS04585 0.40 -1.9 961,415 + HGI48_RS04585 0.40 -2.8 961,416 - HGI48_RS04585 0.40 -2.3 961,416 - HGI48_RS04585 0.40 -1.4 961,416 - HGI48_RS04585 0.40 -1.4 961,416 - -0.7 961,475 - HGI48_RS04585 0.45 -1.7 961,475 - +2.2 961,700 + HGI48_RS04585 0.62 -1.0 961,739 + HGI48_RS04585 0.65 +0.0 961,740 - -0.7 961,928 + HGI48_RS04585 0.79 +1.5 962,021 + HGI48_RS04585 0.87 -1.4 962,021 + HGI48_RS04585 0.87 +1.0 962,023 + HGI48_RS04585 0.87 -3.4 962,023 + HGI48_RS04585 0.87 -2.1 962,023 + HGI48_RS04585 0.87 -1.9 962,023 + HGI48_RS04585 0.87 +0.2 962,023 + HGI48_RS04585 0.87 -2.2 962,023 + HGI48_RS04585 0.87 +1.5 962,024 - HGI48_RS04585 0.87 +1.4 962,024 - HGI48_RS04585 0.87 -1.9 962,024 - HGI48_RS04585 0.87 +1.2 962,024 - HGI48_RS04585 0.87 +0.9 962,024 - HGI48_RS04585 0.87 -1.9 962,024 - -0.7 962,193 + +0.1 962,193 + -1.1 962,193 + -0.4 962,193 + -0.7 962,193 + -3.0 962,194 - -0.3 962,220 + +0.2 962,221 - -1.7 962,221 - +2.8 962,221 - -0.7 962,497 + HGI48_RS04590 0.14 +0.5 962,497 + HGI48_RS04590 0.14 +1.1 962,497 + HGI48_RS04590 0.14 -0.4 962,498 - HGI48_RS04590 0.14 +1.2 962,509 + HGI48_RS04590 0.15 -0.9 962,535 + HGI48_RS04590 0.17 -0.7 962,535 + -0.7 962,536 - HGI48_RS04590 0.17 -1.7 962,536 - HGI48_RS04590 0.17 -2.8 962,777 - HGI48_RS04590 0.37 -2.6 962,788 + -0.7 962,789 - HGI48_RS04590 0.38 -1.9 962,789 - HGI48_RS04590 0.38 -3.1 962,816 - HGI48_RS04590 0.40 -1.9 962,986 + HGI48_RS04590 0.55 +0.5 963,001 + HGI48_RS04590 0.56 +1.2 963,002 - HGI48_RS04590 0.56 -1.1 963,080 + HGI48_RS04590 0.63 +0.9 963,183 + -0.7 963,183 + HGI48_RS04590 0.71 -1.9 963,432 + -1.1 963,432 + +0.4 963,433 - -0.6 963,433 - -0.1 963,433 - -1.1 963,589 + -2.1 963,589 + +0.0 963,603 - -0.7 963,606 - -2.4 963,606 - -0.7 963,653 + -0.7 963,757 + +0.9 963,875 - HGI48_RS04595 0.17 +0.9 963,880 - HGI48_RS04595 0.23 -2.7 963,903 - HGI48_RS04595 0.49 +1.5 963,903 - HGI48_RS04595 0.49 +1.0 963,903 - HGI48_RS04595 0.49 +0.3 963,915 - HGI48_RS04595 0.63 +1.9 963,944 + -1.7 963,944 + +1.3 963,945 - -3.1 963,945 - +1.4 963,968 + -1.7 964,014 + +1.9 964,014 + +0.2 964,014 + +0.9 964,015 - -0.1 964,015 - -0.1 964,047 + -2.4 964,047 + -2.1 964,110 + -0.1 964,130 - -2.9 964,153 - -0.6 964,153 - +0.7 964,162 - -0.6 964,162 - +0.3 964,165 + -1.4 964,165 + +0.9 964,166 - -0.1 964,166 - -0.7 964,166 - -0.7 964,166 - -1.9 964,166 - -1.0 964,166 - -1.1 964,170 + -0.4 964,170 + +1.2 964,180 + +0.3 964,180 + -0.1 964,180 + -2.1 964,181 - -0.5 964,186 + +0.4 964,186 + -0.7 964,186 + -0.4 964,186 + -1.1 964,186 + -1.1 964,187 - +0.6 964,187 - +1.9 964,187 - +1.6 964,187 - +0.1 964,247 + +0.7 964,247 + -0.7 964,247 + -1.4 964,248 - -1.9 964,248 - -2.1 964,248 - -1.7 964,249 + -0.7 964,249 + -1.1 964,249 + +1.1 964,249 + +0.4 964,249 + -0.1 964,249 + -0.1 964,250 - +1.7 964,250 - +1.1 964,250 - -1.7 964,250 - -0.5 964,318 + HGI48_RS04600 0.15 -2.9 964,322 + HGI48_RS04600 0.15 -0.5 964,322 + HGI48_RS04600 0.15 +1.7 964,322 + HGI48_RS04600 0.15 -0.3 964,322 + HGI48_RS04600 0.15 +1.4 964,322 + HGI48_RS04600 0.15 +0.6 964,322 + HGI48_RS04600 0.15 -2.1 964,323 - HGI48_RS04600 0.16 -1.4 964,323 - HGI48_RS04600 0.16 -1.9 964,323 - HGI48_RS04600 0.16 +2.2 964,323 - HGI48_RS04600 0.16 -1.9 964,323 - HGI48_RS04600 0.16 +0.5 964,323 - HGI48_RS04600 0.16 +1.3 964,323 - HGI48_RS04600 0.16 -1.7 964,324 + HGI48_RS04600 0.16 -1.1 964,324 + HGI48_RS04600 0.16 -0.6 964,325 - HGI48_RS04600 0.16 -1.4 964,325 - HGI48_RS04600 0.16 +1.9 964,356 + +2.1 964,356 + HGI48_RS04600 0.21 -0.2 964,356 + HGI48_RS04600 0.21 -2.1 964,356 + HGI48_RS04600 0.21 +0.1 964,356 + HGI48_RS04600 0.21 -1.7 964,356 + HGI48_RS04600 0.21 +0.8 964,356 + HGI48_RS04600 0.21 +1.0 964,357 - HGI48_RS04600 0.21 +0.4 964,357 - HGI48_RS04600 0.21 -0.1 964,357 - HGI48_RS04600 0.21 +0.2 964,357 - HGI48_RS04600 0.21 -1.7 964,357 - HGI48_RS04600 0.21 +0.5 964,357 - HGI48_RS04600 0.21 -1.9 964,357 - HGI48_RS04600 0.21 +0.4 964,358 + HGI48_RS04600 0.21 +1.5 964,358 + HGI48_RS04600 0.21 +0.5 964,359 - HGI48_RS04600 0.21 +1.2 964,390 - HGI48_RS04600 0.26 -2.7 964,390 - HGI48_RS04600 0.26 -1.7 964,453 + HGI48_RS04600 0.36 +0.2 964,472 + HGI48_RS04600 0.39 +0.5 964,473 - HGI48_RS04600 0.40 -1.4 964,475 + HGI48_RS04600 0.40 +0.2 964,475 + HGI48_RS04600 0.40 -1.1 964,498 + HGI48_RS04600 0.44 +0.2
Or see this region's nucleotide sequence