Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04460 and HGI48_RS04465 are separated by 147 nucleotides HGI48_RS04465 and HGI48_RS04470 are separated by 46 nucleotides HGI48_RS04470 and HGI48_RS04475 are separated by 448 nucleotides
HGI48_RS04460: HGI48_RS04460 - cell division protein ZipA, at 933,855 to 934,754
_RS04460
HGI48_RS04465: HGI48_RS04465 - L-methionine/branched-chain amino acid transporter, at 934,902 to 936,155
_RS04465
HGI48_RS04470: HGI48_RS04470 - accessory factor UbiK family protein, at 936,202 to 936,486
_RS04470
HGI48_RS04475: HGI48_RS04475 - 3,4-dihydroxy-2-butanone-4-phosphate synthase, at 936,935 to 937,588
_RS04475
Position (kb) 934
935
936
937 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 934.723 kb on + strand at 934.727 kb on + strand at 934.727 kb on + strand at 934.733 kb on + strand at 934.733 kb on + strand at 934.737 kb on - strand at 934.737 kb on - strand at 934.773 kb on + strand at 934.773 kb on + strand at 934.773 kb on + strand at 934.773 kb on + strand at 934.773 kb on + strand at 934.774 kb on - strand at 934.774 kb on - strand at 934.774 kb on - strand at 934.774 kb on - strand at 934.774 kb on - strand at 934.779 kb on + strand at 934.780 kb on - strand at 934.780 kb on - strand at 934.814 kb on - strand at 934.814 kb on - strand at 934.914 kb on - strand at 934.914 kb on - strand at 934.916 kb on + strand at 934.916 kb on + strand at 934.917 kb on - strand at 934.917 kb on - strand at 934.917 kb on - strand at 934.918 kb on - strand at 935.351 kb on - strand, within HGI48_RS04465 at 935.351 kb on - strand, within HGI48_RS04465 at 935.578 kb on + strand, within HGI48_RS04465 at 935.578 kb on + strand, within HGI48_RS04465 at 935.578 kb on + strand, within HGI48_RS04465 at 935.578 kb on + strand, within HGI48_RS04465 at 935.578 kb on + strand at 935.578 kb on + strand, within HGI48_RS04465 at 935.582 kb on + strand, within HGI48_RS04465 at 935.582 kb on + strand, within HGI48_RS04465 at 935.582 kb on + strand, within HGI48_RS04465 at 935.582 kb on + strand at 935.582 kb on + strand, within HGI48_RS04465 at 935.582 kb on + strand, within HGI48_RS04465 at 935.582 kb on + strand, within HGI48_RS04465 at 935.582 kb on + strand, within HGI48_RS04465 at 935.582 kb on + strand at 935.582 kb on + strand, within HGI48_RS04465 at 935.583 kb on - strand, within HGI48_RS04465 at 935.583 kb on - strand, within HGI48_RS04465 at 935.583 kb on - strand, within HGI48_RS04465 at 935.583 kb on - strand at 935.583 kb on - strand, within HGI48_RS04465 at 935.583 kb on - strand, within HGI48_RS04465 at 935.583 kb on - strand, within HGI48_RS04465 at 935.615 kb on + strand, within HGI48_RS04465 at 935.615 kb on + strand, within HGI48_RS04465 at 935.615 kb on + strand, within HGI48_RS04465 at 935.615 kb on + strand, within HGI48_RS04465 at 935.616 kb on - strand, within HGI48_RS04465 at 935.616 kb on - strand, within HGI48_RS04465 at 935.616 kb on - strand, within HGI48_RS04465 at 935.616 kb on - strand, within HGI48_RS04465 at 935.616 kb on - strand, within HGI48_RS04465 at 935.616 kb on - strand at 935.644 kb on - strand, within HGI48_RS04465 at 935.762 kb on + strand, within HGI48_RS04465 at 935.762 kb on + strand, within HGI48_RS04465 at 935.762 kb on + strand, within HGI48_RS04465 at 935.762 kb on + strand, within HGI48_RS04465 at 935.762 kb on + strand, within HGI48_RS04465 at 935.762 kb on + strand, within HGI48_RS04465 at 935.763 kb on - strand at 935.763 kb on - strand, within HGI48_RS04465 at 935.763 kb on - strand, within HGI48_RS04465 at 935.763 kb on - strand, within HGI48_RS04465 at 935.766 kb on + strand, within HGI48_RS04465 at 935.766 kb on + strand, within HGI48_RS04465 at 935.766 kb on + strand, within HGI48_RS04465 at 935.766 kb on + strand, within HGI48_RS04465 at 935.766 kb on + strand, within HGI48_RS04465 at 935.766 kb on + strand, within HGI48_RS04465 at 935.766 kb on + strand, within HGI48_RS04465 at 935.766 kb on + strand, within HGI48_RS04465 at 935.766 kb on + strand, within HGI48_RS04465 at 935.767 kb on - strand, within HGI48_RS04465 at 935.767 kb on - strand, within HGI48_RS04465 at 935.767 kb on - strand, within HGI48_RS04465 at 935.767 kb on - strand, within HGI48_RS04465 at 935.767 kb on - strand, within HGI48_RS04465 at 935.767 kb on - strand, within HGI48_RS04465 at 935.767 kb on - strand, within HGI48_RS04465 at 935.767 kb on - strand, within HGI48_RS04465 at 935.767 kb on - strand, within HGI48_RS04465 at 935.767 kb on - strand, within HGI48_RS04465 at 935.767 kb on - strand at 935.768 kb on + strand, within HGI48_RS04465 at 935.768 kb on + strand, within HGI48_RS04465 at 935.768 kb on + strand, within HGI48_RS04465 at 935.769 kb on - strand, within HGI48_RS04465 at 935.769 kb on - strand, within HGI48_RS04465 at 935.769 kb on - strand, within HGI48_RS04465 at 935.769 kb on - strand, within HGI48_RS04465 at 935.900 kb on + strand, within HGI48_RS04465 at 935.900 kb on + strand, within HGI48_RS04465 at 935.901 kb on - strand at 935.940 kb on + strand, within HGI48_RS04465 at 935.941 kb on - strand, within HGI48_RS04465 at 935.958 kb on - strand, within HGI48_RS04465 at 935.968 kb on - strand, within HGI48_RS04465 at 936.040 kb on + strand at 936.040 kb on + strand at 936.040 kb on + strand at 936.041 kb on - strand at 936.041 kb on - strand at 936.084 kb on + strand at 936.085 kb on - strand at 936.085 kb on - strand at 936.203 kb on + strand at 936.204 kb on - strand at 936.522 kb on - strand at 936.522 kb on - strand at 936.522 kb on - strand at 936.522 kb on - strand at 936.523 kb on + strand at 936.523 kb on + strand at 936.523 kb on + strand at 936.523 kb on + strand at 936.524 kb on - strand at 936.524 kb on - strand at 936.535 kb on - strand at 936.535 kb on - strand at 936.553 kb on + strand at 936.553 kb on + strand at 936.596 kb on + strand at 936.597 kb on - strand at 936.597 kb on - strand at 936.597 kb on - strand at 936.638 kb on + strand at 936.669 kb on + strand at 936.781 kb on + strand at 936.821 kb on + strand at 936.914 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 934,723 + +0.6 934,727 + -1.6 934,727 + +0.3 934,733 + +0.8 934,733 + +0.9 934,737 - -2.1 934,737 - +0.2 934,773 + +0.0 934,773 + +0.1 934,773 + -1.4 934,773 + +1.5 934,773 + +1.7 934,774 - +0.3 934,774 - +1.4 934,774 - -1.4 934,774 - -2.4 934,774 - -1.1 934,779 + -1.9 934,780 - -1.1 934,780 - -1.9 934,814 - +0.3 934,814 - -0.6 934,914 - +0.9 934,914 - -0.7 934,916 + -3.0 934,916 + -2.7 934,917 - -1.4 934,917 - -2.1 934,917 - -2.1 934,918 - -0.6 935,351 - HGI48_RS04465 0.36 -1.9 935,351 - HGI48_RS04465 0.36 -0.1 935,578 + HGI48_RS04465 0.54 -0.1 935,578 + HGI48_RS04465 0.54 +1.4 935,578 + HGI48_RS04465 0.54 +1.5 935,578 + HGI48_RS04465 0.54 -2.1 935,578 + -0.1 935,578 + HGI48_RS04465 0.54 -1.9 935,582 + HGI48_RS04465 0.54 +0.1 935,582 + HGI48_RS04465 0.54 -1.7 935,582 + HGI48_RS04465 0.54 -3.2 935,582 + +1.3 935,582 + HGI48_RS04465 0.54 -1.1 935,582 + HGI48_RS04465 0.54 -1.7 935,582 + HGI48_RS04465 0.54 -1.7 935,582 + HGI48_RS04465 0.54 +1.5 935,582 + +2.1 935,582 + HGI48_RS04465 0.54 +1.7 935,583 - HGI48_RS04465 0.54 +0.9 935,583 - HGI48_RS04465 0.54 +1.9 935,583 - HGI48_RS04465 0.54 -0.1 935,583 - -0.1 935,583 - HGI48_RS04465 0.54 -2.2 935,583 - HGI48_RS04465 0.54 -1.1 935,583 - HGI48_RS04465 0.54 -0.7 935,615 + HGI48_RS04465 0.57 -1.9 935,615 + HGI48_RS04465 0.57 +1.5 935,615 + HGI48_RS04465 0.57 -3.7 935,615 + HGI48_RS04465 0.57 +1.4 935,616 - HGI48_RS04465 0.57 -0.7 935,616 - HGI48_RS04465 0.57 +0.0 935,616 - HGI48_RS04465 0.57 -1.7 935,616 - HGI48_RS04465 0.57 -0.5 935,616 - HGI48_RS04465 0.57 +0.6 935,616 - -0.7 935,644 - HGI48_RS04465 0.59 +0.9 935,762 + HGI48_RS04465 0.69 -1.3 935,762 + HGI48_RS04465 0.69 +0.5 935,762 + HGI48_RS04465 0.69 -1.1 935,762 + HGI48_RS04465 0.69 +0.5 935,762 + HGI48_RS04465 0.69 -2.2 935,762 + HGI48_RS04465 0.69 +0.6 935,763 - -0.7 935,763 - HGI48_RS04465 0.69 +0.9 935,763 - HGI48_RS04465 0.69 -0.1 935,763 - HGI48_RS04465 0.69 -1.9 935,766 + HGI48_RS04465 0.69 +2.0 935,766 + HGI48_RS04465 0.69 -2.4 935,766 + HGI48_RS04465 0.69 +0.9 935,766 + HGI48_RS04465 0.69 -1.4 935,766 + HGI48_RS04465 0.69 -1.2 935,766 + HGI48_RS04465 0.69 -1.1 935,766 + HGI48_RS04465 0.69 -2.1 935,766 + HGI48_RS04465 0.69 +0.4 935,766 + HGI48_RS04465 0.69 -1.7 935,767 - HGI48_RS04465 0.69 -1.4 935,767 - HGI48_RS04465 0.69 -0.1 935,767 - HGI48_RS04465 0.69 -1.9 935,767 - HGI48_RS04465 0.69 -1.4 935,767 - HGI48_RS04465 0.69 +0.6 935,767 - HGI48_RS04465 0.69 +2.7 935,767 - HGI48_RS04465 0.69 +0.2 935,767 - HGI48_RS04465 0.69 -2.7 935,767 - HGI48_RS04465 0.69 -1.8 935,767 - HGI48_RS04465 0.69 -0.6 935,767 - +1.9 935,768 + HGI48_RS04465 0.69 -1.4 935,768 + HGI48_RS04465 0.69 +0.5 935,768 + HGI48_RS04465 0.69 +0.3 935,769 - HGI48_RS04465 0.69 -2.3 935,769 - HGI48_RS04465 0.69 -0.7 935,769 - HGI48_RS04465 0.69 -1.1 935,769 - HGI48_RS04465 0.69 +2.4 935,900 + HGI48_RS04465 0.80 -1.4 935,900 + HGI48_RS04465 0.80 +1.5 935,901 - -0.7 935,940 + HGI48_RS04465 0.83 -0.7 935,941 - HGI48_RS04465 0.83 -0.2 935,958 - HGI48_RS04465 0.84 +0.1 935,968 - HGI48_RS04465 0.85 -2.8 936,040 + -1.7 936,040 + +3.4 936,040 + -2.1 936,041 - +0.9 936,041 - +0.6 936,084 + -1.7 936,085 - -0.6 936,085 - +0.5 936,203 + -1.5 936,204 - -1.1 936,522 - -2.2 936,522 - -1.4 936,522 - +0.7 936,522 - +1.0 936,523 + +0.5 936,523 + -1.0 936,523 + -1.4 936,523 + -0.4 936,524 - +1.2 936,524 - +0.1 936,535 - -1.0 936,535 - -1.2 936,553 + -0.9 936,553 + -2.1 936,596 + -0.2 936,597 - -3.5 936,597 - -0.5 936,597 - -0.3 936,638 + -1.4 936,669 + -0.1 936,781 + -2.1 936,821 + -0.9 936,914 + -1.9
Or see this region's nucleotide sequence