Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03310 and HGI48_RS03315 are separated by 62 nucleotides HGI48_RS03315 and HGI48_RS03320 are separated by 89 nucleotides
HGI48_RS03310: HGI48_RS03310 - deoxyribose-phosphate aldolase, at 698,175 to 698,954
_RS03310
HGI48_RS03315: HGI48_RS03315 - thymidine phosphorylase, at 699,017 to 700,348
_RS03315
HGI48_RS03320: HGI48_RS03320 - phosphopentomutase, at 700,438 to 701,661
_RS03320
Position (kb) 699
700
701 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 698.039 kb on - strand at 698.058 kb on + strand at 698.059 kb on - strand at 698.059 kb on - strand at 698.066 kb on + strand at 698.080 kb on + strand at 698.108 kb on + strand at 698.109 kb on - strand at 698.109 kb on - strand at 698.109 kb on - strand at 698.124 kb on + strand at 698.125 kb on - strand at 698.130 kb on + strand at 698.130 kb on + strand at 698.131 kb on - strand at 698.174 kb on + strand at 698.175 kb on - strand at 698.175 kb on - strand at 698.175 kb on - strand at 698.186 kb on - strand at 698.225 kb on - strand at 698.225 kb on - strand at 698.283 kb on - strand, within HGI48_RS03310 at 698.315 kb on + strand, within HGI48_RS03310 at 698.315 kb on + strand, within HGI48_RS03310 at 698.316 kb on - strand, within HGI48_RS03310 at 698.316 kb on - strand, within HGI48_RS03310 at 698.316 kb on - strand, within HGI48_RS03310 at 698.316 kb on - strand, within HGI48_RS03310 at 698.319 kb on + strand, within HGI48_RS03310 at 698.319 kb on + strand, within HGI48_RS03310 at 698.319 kb on + strand, within HGI48_RS03310 at 698.576 kb on - strand, within HGI48_RS03310 at 698.775 kb on - strand, within HGI48_RS03310 at 698.792 kb on - strand at 698.817 kb on + strand, within HGI48_RS03310 at 698.818 kb on - strand, within HGI48_RS03310 at 698.838 kb on - strand, within HGI48_RS03310 at 698.838 kb on - strand, within HGI48_RS03310 at 698.993 kb on - strand at 698.999 kb on + strand at 698.999 kb on + strand at 698.999 kb on + strand at 698.999 kb on + strand at 699.000 kb on - strand at 699.166 kb on + strand, within HGI48_RS03315 at 699.166 kb on + strand, within HGI48_RS03315 at 699.167 kb on - strand, within HGI48_RS03315 at 699.338 kb on + strand, within HGI48_RS03315 at 699.339 kb on - strand, within HGI48_RS03315 at 699.339 kb on - strand, within HGI48_RS03315 at 699.452 kb on - strand, within HGI48_RS03315 at 699.518 kb on + strand, within HGI48_RS03315 at 699.656 kb on + strand, within HGI48_RS03315 at 699.656 kb on + strand, within HGI48_RS03315 at 699.656 kb on + strand, within HGI48_RS03315 at 699.656 kb on + strand, within HGI48_RS03315 at 699.657 kb on - strand, within HGI48_RS03315 at 699.657 kb on - strand, within HGI48_RS03315 at 699.657 kb on - strand, within HGI48_RS03315 at 699.657 kb on - strand, within HGI48_RS03315 at 699.783 kb on + strand at 699.951 kb on + strand, within HGI48_RS03315 at 699.951 kb on + strand, within HGI48_RS03315 at 699.951 kb on + strand, within HGI48_RS03315 at 699.961 kb on + strand, within HGI48_RS03315 at 700.009 kb on + strand, within HGI48_RS03315 at 700.009 kb on + strand, within HGI48_RS03315 at 700.010 kb on - strand at 700.013 kb on + strand, within HGI48_RS03315 at 700.013 kb on + strand, within HGI48_RS03315 at 700.013 kb on + strand, within HGI48_RS03315 at 700.013 kb on + strand, within HGI48_RS03315 at 700.013 kb on + strand, within HGI48_RS03315 at 700.013 kb on + strand, within HGI48_RS03315 at 700.013 kb on + strand, within HGI48_RS03315 at 700.013 kb on + strand, within HGI48_RS03315 at 700.013 kb on + strand, within HGI48_RS03315 at 700.013 kb on + strand, within HGI48_RS03315 at 700.013 kb on + strand, within HGI48_RS03315 at 700.013 kb on + strand, within HGI48_RS03315 at 700.013 kb on + strand at 700.013 kb on + strand, within HGI48_RS03315 at 700.013 kb on + strand, within HGI48_RS03315 at 700.013 kb on + strand, within HGI48_RS03315 at 700.013 kb on + strand, within HGI48_RS03315 at 700.013 kb on + strand, within HGI48_RS03315 at 700.013 kb on + strand, within HGI48_RS03315 at 700.014 kb on - strand, within HGI48_RS03315 at 700.014 kb on - strand, within HGI48_RS03315 at 700.014 kb on - strand, within HGI48_RS03315 at 700.014 kb on - strand, within HGI48_RS03315 at 700.014 kb on - strand, within HGI48_RS03315 at 700.014 kb on - strand, within HGI48_RS03315 at 700.014 kb on - strand, within HGI48_RS03315 at 700.014 kb on - strand, within HGI48_RS03315 at 700.014 kb on - strand, within HGI48_RS03315 at 700.014 kb on - strand, within HGI48_RS03315 at 700.014 kb on - strand, within HGI48_RS03315 at 700.014 kb on - strand at 700.141 kb on + strand, within HGI48_RS03315 at 700.320 kb on - strand at 700.346 kb on + strand at 700.346 kb on + strand at 700.346 kb on + strand at 700.347 kb on - strand at 700.352 kb on + strand at 700.352 kb on + strand at 700.353 kb on - strand at 700.372 kb on - strand at 700.375 kb on + strand at 700.375 kb on + strand at 700.375 kb on + strand at 700.375 kb on + strand at 700.375 kb on + strand at 700.375 kb on + strand at 700.375 kb on + strand at 700.375 kb on + strand at 700.376 kb on - strand at 700.376 kb on - strand at 700.376 kb on - strand at 700.395 kb on + strand at 700.395 kb on + strand at 700.395 kb on + strand at 700.399 kb on + strand at 700.399 kb on + strand at 700.399 kb on + strand at 700.399 kb on + strand at 700.399 kb on + strand at 700.399 kb on + strand at 700.400 kb on - strand at 700.400 kb on - strand at 700.400 kb on - strand at 700.401 kb on + strand at 700.401 kb on + strand at 700.401 kb on + strand at 700.402 kb on - strand at 700.402 kb on - strand at 700.402 kb on - strand at 700.402 kb on - strand at 700.432 kb on - strand at 700.435 kb on + strand at 700.436 kb on - strand at 700.436 kb on - strand at 700.943 kb on - strand, within HGI48_RS03320 at 701.053 kb on + strand at 701.228 kb on - strand, within HGI48_RS03320
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 698,039 - -2.8 698,058 + -2.1 698,059 - +1.0 698,059 - -2.1 698,066 + -0.4 698,080 + -2.7 698,108 + +2.5 698,109 - -1.0 698,109 - -0.4 698,109 - +3.0 698,124 + +1.6 698,125 - -1.5 698,130 + -0.8 698,130 + +1.2 698,131 - -2.3 698,174 + +0.4 698,175 - -1.8 698,175 - +1.0 698,175 - +1.2 698,186 - -1.6 698,225 - +0.0 698,225 - +1.9 698,283 - HGI48_RS03310 0.14 -0.8 698,315 + HGI48_RS03310 0.18 +0.6 698,315 + HGI48_RS03310 0.18 +1.7 698,316 - HGI48_RS03310 0.18 -1.8 698,316 - HGI48_RS03310 0.18 -1.0 698,316 - HGI48_RS03310 0.18 -1.8 698,316 - HGI48_RS03310 0.18 -1.3 698,319 + HGI48_RS03310 0.18 -1.0 698,319 + HGI48_RS03310 0.18 -2.8 698,319 + HGI48_RS03310 0.18 -1.0 698,576 - HGI48_RS03310 0.51 +0.5 698,775 - HGI48_RS03310 0.77 +0.4 698,792 - -0.6 698,817 + HGI48_RS03310 0.82 -2.1 698,818 - HGI48_RS03310 0.82 +0.5 698,838 - HGI48_RS03310 0.85 -1.3 698,838 - HGI48_RS03310 0.85 -2.0 698,993 - +0.8 698,999 + -0.6 698,999 + -1.8 698,999 + +1.2 698,999 + -1.8 699,000 - +1.0 699,166 + HGI48_RS03315 0.11 -3.7 699,166 + HGI48_RS03315 0.11 +0.3 699,167 - HGI48_RS03315 0.11 +1.0 699,338 + HGI48_RS03315 0.24 -1.6 699,339 - HGI48_RS03315 0.24 +1.5 699,339 - HGI48_RS03315 0.24 -1.3 699,452 - HGI48_RS03315 0.33 -0.0 699,518 + HGI48_RS03315 0.38 +1.4 699,656 + HGI48_RS03315 0.48 +0.9 699,656 + HGI48_RS03315 0.48 +0.5 699,656 + HGI48_RS03315 0.48 +2.2 699,656 + HGI48_RS03315 0.48 +3.3 699,657 - HGI48_RS03315 0.48 +0.4 699,657 - HGI48_RS03315 0.48 -0.2 699,657 - HGI48_RS03315 0.48 -3.9 699,657 - HGI48_RS03315 0.48 +1.0 699,783 + -0.6 699,951 + HGI48_RS03315 0.70 -1.3 699,951 + HGI48_RS03315 0.70 -1.6 699,951 + HGI48_RS03315 0.70 +0.7 699,961 + HGI48_RS03315 0.71 -0.2 700,009 + HGI48_RS03315 0.74 -3.3 700,009 + HGI48_RS03315 0.74 -0.2 700,010 - -0.6 700,013 + HGI48_RS03315 0.75 -1.0 700,013 + HGI48_RS03315 0.75 +0.4 700,013 + HGI48_RS03315 0.75 +0.6 700,013 + HGI48_RS03315 0.75 -2.9 700,013 + HGI48_RS03315 0.75 -1.6 700,013 + HGI48_RS03315 0.75 +0.6 700,013 + HGI48_RS03315 0.75 -0.2 700,013 + HGI48_RS03315 0.75 -2.0 700,013 + HGI48_RS03315 0.75 +1.3 700,013 + HGI48_RS03315 0.75 +1.4 700,013 + HGI48_RS03315 0.75 -1.3 700,013 + HGI48_RS03315 0.75 -2.0 700,013 + -0.6 700,013 + HGI48_RS03315 0.75 -0.1 700,013 + HGI48_RS03315 0.75 +0.5 700,013 + HGI48_RS03315 0.75 -1.3 700,013 + HGI48_RS03315 0.75 -0.7 700,013 + HGI48_RS03315 0.75 -2.3 700,013 + HGI48_RS03315 0.75 -2.6 700,014 - HGI48_RS03315 0.75 +0.7 700,014 - HGI48_RS03315 0.75 -1.3 700,014 - HGI48_RS03315 0.75 -1.8 700,014 - HGI48_RS03315 0.75 -0.1 700,014 - HGI48_RS03315 0.75 +1.4 700,014 - HGI48_RS03315 0.75 -1.8 700,014 - HGI48_RS03315 0.75 +2.1 700,014 - HGI48_RS03315 0.75 -0.1 700,014 - HGI48_RS03315 0.75 -1.3 700,014 - HGI48_RS03315 0.75 -1.6 700,014 - HGI48_RS03315 0.75 -1.8 700,014 - +0.0 700,141 + HGI48_RS03315 0.84 +1.7 700,320 - -1.1 700,346 + -1.1 700,346 + +1.5 700,346 + -1.6 700,347 - -3.1 700,352 + +1.2 700,352 + -0.6 700,353 - -4.8 700,372 - -1.8 700,375 + -2.6 700,375 + +1.0 700,375 + +1.4 700,375 + -1.3 700,375 + +1.0 700,375 + -1.0 700,375 + -2.0 700,375 + -1.8 700,376 - -2.1 700,376 - -0.4 700,376 - -1.0 700,395 + -0.4 700,395 + -0.6 700,395 + +0.0 700,399 + +1.8 700,399 + -2.8 700,399 + -2.0 700,399 + -2.0 700,399 + -0.7 700,399 + -3.0 700,400 - +1.6 700,400 - -0.2 700,400 - +0.2 700,401 + +1.3 700,401 + -1.6 700,401 + +0.8 700,402 - -1.8 700,402 - -0.3 700,402 - +1.2 700,402 - +0.0 700,432 - +0.4 700,435 + +0.9 700,436 - +1.5 700,436 - +0.8 700,943 - HGI48_RS03320 0.41 +1.8 701,053 + +2.5 701,228 - HGI48_RS03320 0.65 -0.8
Or see this region's nucleotide sequence