Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03060 and HGI48_RS03065 are separated by 11 nucleotides HGI48_RS03065 and HGI48_RS03070 are separated by 59 nucleotides HGI48_RS03070 and HGI48_RS03075 are separated by 14 nucleotides HGI48_RS03075 and HGI48_RS03080 overlap by 8 nucleotides
HGI48_RS03060: HGI48_RS03060 - phage tail sheath protein, at 651,290 to 652,462
_RS03060
HGI48_RS03065: HGI48_RS03065 - phage major tail tube protein, at 652,474 to 652,989
_RS03065
HGI48_RS03070: HGI48_RS03070 - phage tail assembly protein, at 653,049 to 653,351
_RS03070
HGI48_RS03075: HGI48_RS03075 - GpE family phage tail protein, at 653,366 to 653,485
_RS03075
HGI48_RS03080: HGI48_RS03080 - phage tail tape measure protein, at 653,478 to 656,318
_RS03080
Position (kb) 652
653 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 651.586 kb on + strand, within HGI48_RS03060 at 651.586 kb on + strand, within HGI48_RS03060 at 651.586 kb on + strand, within HGI48_RS03060 at 651.586 kb on + strand, within HGI48_RS03060 at 651.587 kb on - strand, within HGI48_RS03060 at 651.587 kb on - strand, within HGI48_RS03060 at 651.587 kb on - strand, within HGI48_RS03060 at 651.663 kb on + strand, within HGI48_RS03060 at 651.697 kb on + strand, within HGI48_RS03060 at 651.697 kb on + strand, within HGI48_RS03060 at 651.697 kb on + strand, within HGI48_RS03060 at 651.697 kb on + strand at 651.697 kb on + strand, within HGI48_RS03060 at 651.698 kb on - strand, within HGI48_RS03060 at 651.698 kb on - strand, within HGI48_RS03060 at 651.700 kb on + strand, within HGI48_RS03060 at 651.700 kb on + strand, within HGI48_RS03060 at 651.701 kb on - strand, within HGI48_RS03060 at 651.755 kb on + strand, within HGI48_RS03060 at 651.756 kb on - strand, within HGI48_RS03060 at 651.767 kb on + strand, within HGI48_RS03060 at 651.767 kb on + strand, within HGI48_RS03060 at 651.768 kb on - strand, within HGI48_RS03060 at 651.768 kb on - strand at 651.949 kb on + strand, within HGI48_RS03060 at 652.142 kb on + strand, within HGI48_RS03060 at 652.142 kb on + strand, within HGI48_RS03060 at 652.142 kb on + strand, within HGI48_RS03060 at 652.143 kb on - strand at 652.143 kb on - strand, within HGI48_RS03060 at 652.171 kb on + strand, within HGI48_RS03060 at 652.237 kb on + strand, within HGI48_RS03060 at 652.364 kb on + strand at 652.364 kb on + strand at 652.364 kb on + strand at 652.365 kb on - strand at 652.370 kb on + strand at 652.370 kb on + strand at 652.370 kb on + strand at 652.370 kb on + strand at 652.370 kb on + strand at 652.370 kb on + strand at 652.371 kb on - strand at 652.371 kb on - strand at 652.371 kb on - strand at 652.371 kb on - strand at 652.371 kb on - strand at 652.371 kb on - strand at 652.371 kb on - strand at 652.427 kb on + strand at 652.427 kb on + strand at 652.427 kb on + strand at 652.427 kb on + strand at 652.427 kb on + strand at 652.427 kb on + strand at 652.428 kb on - strand at 652.428 kb on - strand at 652.428 kb on - strand at 652.428 kb on - strand at 652.428 kb on - strand at 652.428 kb on - strand at 652.428 kb on - strand at 652.428 kb on - strand at 652.499 kb on - strand at 652.617 kb on + strand, within HGI48_RS03065 at 652.743 kb on + strand, within HGI48_RS03065 at 652.743 kb on + strand, within HGI48_RS03065 at 652.873 kb on + strand, within HGI48_RS03065 at 652.873 kb on + strand, within HGI48_RS03065 at 652.874 kb on - strand, within HGI48_RS03065 at 652.874 kb on - strand, within HGI48_RS03065 at 652.874 kb on - strand, within HGI48_RS03065 at 652.874 kb on - strand, within HGI48_RS03065 at 652.876 kb on + strand, within HGI48_RS03065 at 652.877 kb on - strand, within HGI48_RS03065 at 652.877 kb on - strand, within HGI48_RS03065 at 652.923 kb on + strand, within HGI48_RS03065 at 652.923 kb on + strand at 652.987 kb on + strand at 652.987 kb on + strand at 653.031 kb on + strand at 653.032 kb on - strand at 653.032 kb on - strand at 653.032 kb on - strand at 653.037 kb on - strand at 653.141 kb on + strand, within HGI48_RS03070 at 653.142 kb on - strand, within HGI48_RS03070 at 653.225 kb on + strand, within HGI48_RS03070 at 653.483 kb on + strand at 653.483 kb on + strand at 653.483 kb on + strand at 653.483 kb on + strand at 653.483 kb on + strand at 653.484 kb on - strand at 653.484 kb on - strand at 653.484 kb on - strand at 653.484 kb on - strand at 653.484 kb on - strand at 653.484 kb on - strand at 653.487 kb on - strand at 653.487 kb on - strand at 653.521 kb on + strand at 653.521 kb on + strand at 653.521 kb on + strand at 653.522 kb on - strand at 653.522 kb on - strand at 653.522 kb on - strand at 653.522 kb on - strand at 653.525 kb on + strand at 653.679 kb on - strand at 653.807 kb on + strand, within HGI48_RS03080 at 653.807 kb on + strand, within HGI48_RS03080 at 653.808 kb on - strand, within HGI48_RS03080 at 653.808 kb on - strand at 653.811 kb on + strand, within HGI48_RS03080 at 653.811 kb on + strand, within HGI48_RS03080 at 653.811 kb on + strand, within HGI48_RS03080 at 653.811 kb on + strand, within HGI48_RS03080 at 653.811 kb on + strand, within HGI48_RS03080 at 653.812 kb on - strand, within HGI48_RS03080 at 653.812 kb on - strand, within HGI48_RS03080 at 653.812 kb on - strand, within HGI48_RS03080 at 653.812 kb on - strand, within HGI48_RS03080 at 653.812 kb on - strand, within HGI48_RS03080 at 653.812 kb on - strand, within HGI48_RS03080
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 651,586 + HGI48_RS03060 0.25 -1.3 651,586 + HGI48_RS03060 0.25 -2.3 651,586 + HGI48_RS03060 0.25 -1.0 651,586 + HGI48_RS03060 0.25 +1.4 651,587 - HGI48_RS03060 0.25 +0.5 651,587 - HGI48_RS03060 0.25 -1.8 651,587 - HGI48_RS03060 0.25 +2.0 651,663 + HGI48_RS03060 0.32 +1.2 651,697 + HGI48_RS03060 0.35 -1.0 651,697 + HGI48_RS03060 0.35 -2.7 651,697 + HGI48_RS03060 0.35 -1.0 651,697 + +1.0 651,697 + HGI48_RS03060 0.35 -2.1 651,698 - HGI48_RS03060 0.35 +0.0 651,698 - HGI48_RS03060 0.35 -2.5 651,700 + HGI48_RS03060 0.35 +0.4 651,700 + HGI48_RS03060 0.35 +0.8 651,701 - HGI48_RS03060 0.35 +1.7 651,755 + HGI48_RS03060 0.40 -1.5 651,756 - HGI48_RS03060 0.40 +0.7 651,767 + HGI48_RS03060 0.41 -1.8 651,767 + HGI48_RS03060 0.41 -2.0 651,768 - HGI48_RS03060 0.41 +0.3 651,768 - -0.5 651,949 + HGI48_RS03060 0.56 +2.2 652,142 + HGI48_RS03060 0.73 -1.5 652,142 + HGI48_RS03060 0.73 -1.3 652,142 + HGI48_RS03060 0.73 -1.2 652,143 - +2.3 652,143 - HGI48_RS03060 0.73 +0.6 652,171 + HGI48_RS03060 0.75 +0.8 652,237 + HGI48_RS03060 0.81 +0.3 652,364 + -1.3 652,364 + +0.5 652,364 + -2.0 652,365 - -0.5 652,370 + -2.1 652,370 + +1.6 652,370 + -1.3 652,370 + -1.5 652,370 + -2.1 652,370 + -1.5 652,371 - -2.5 652,371 - +1.4 652,371 - +1.2 652,371 - +0.4 652,371 - +1.6 652,371 - +1.0 652,371 - -1.3 652,427 + +0.6 652,427 + -0.6 652,427 + +1.5 652,427 + -1.3 652,427 + -1.3 652,427 + +0.4 652,428 - -1.5 652,428 - +0.4 652,428 - +0.0 652,428 - -0.5 652,428 - +2.9 652,428 - +0.2 652,428 - -2.1 652,428 - +1.4 652,499 - -2.7 652,617 + HGI48_RS03065 0.28 +0.7 652,743 + HGI48_RS03065 0.52 +0.9 652,743 + HGI48_RS03065 0.52 -0.3 652,873 + HGI48_RS03065 0.77 +0.8 652,873 + HGI48_RS03065 0.77 +0.4 652,874 - HGI48_RS03065 0.78 -2.0 652,874 - HGI48_RS03065 0.78 -2.4 652,874 - HGI48_RS03065 0.78 -1.0 652,874 - HGI48_RS03065 0.78 -1.3 652,876 + HGI48_RS03065 0.78 -1.0 652,877 - HGI48_RS03065 0.78 -4.1 652,877 - HGI48_RS03065 0.78 +2.2 652,923 + HGI48_RS03065 0.87 +1.5 652,923 + +0.0 652,987 + +1.9 652,987 + +0.7 653,031 + +0.7 653,032 - -1.3 653,032 - +1.5 653,032 - -1.3 653,037 - +0.0 653,141 + HGI48_RS03070 0.30 -0.1 653,142 - HGI48_RS03070 0.31 -1.0 653,225 + HGI48_RS03070 0.58 +2.1 653,483 + -0.7 653,483 + +1.0 653,483 + -2.0 653,483 + -2.7 653,483 + +1.2 653,484 - -1.2 653,484 - -1.3 653,484 - +2.0 653,484 - -0.2 653,484 - +1.7 653,484 - -0.4 653,487 - -0.5 653,487 - +2.0 653,521 + +1.4 653,521 + -0.5 653,521 + -0.1 653,522 - +0.0 653,522 - -1.5 653,522 - -2.0 653,522 - -1.8 653,525 + +1.7 653,679 - -1.5 653,807 + HGI48_RS03080 0.12 -1.5 653,807 + HGI48_RS03080 0.12 -1.0 653,808 - HGI48_RS03080 0.12 +1.4 653,808 - -0.5 653,811 + HGI48_RS03080 0.12 +2.0 653,811 + HGI48_RS03080 0.12 -0.1 653,811 + HGI48_RS03080 0.12 -0.4 653,811 + HGI48_RS03080 0.12 -2.0 653,811 + HGI48_RS03080 0.12 -0.3 653,812 - HGI48_RS03080 0.12 -1.3 653,812 - HGI48_RS03080 0.12 +0.0 653,812 - HGI48_RS03080 0.12 -1.0 653,812 - HGI48_RS03080 0.12 +0.4 653,812 - HGI48_RS03080 0.12 +0.8 653,812 - HGI48_RS03080 0.12 +1.9
Or see this region's nucleotide sequence