Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01730 and HGI48_RS01735 are separated by 150 nucleotides HGI48_RS01735 and HGI48_RS01740 are separated by 9 nucleotides
HGI48_RS01730: HGI48_RS01730 - L-rhamnose/proton symporter RhaT, at 381,332 to 382,360
_RS01730
HGI48_RS01735: HGI48_RS01735 - L-rhamnose isomerase, at 382,511 to 383,770
_RS01735
HGI48_RS01740: HGI48_RS01740 - rhamnulokinase, at 383,780 to 385,252
_RS01740
Position (kb) 382
383
384 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 381.537 kb on + strand, within HGI48_RS01730 at 381.537 kb on + strand, within HGI48_RS01730 at 381.538 kb on - strand, within HGI48_RS01730 at 381.538 kb on - strand, within HGI48_RS01730 at 381.538 kb on - strand, within HGI48_RS01730 at 381.631 kb on - strand, within HGI48_RS01730 at 381.703 kb on + strand at 381.704 kb on - strand, within HGI48_RS01730 at 381.733 kb on - strand, within HGI48_RS01730 at 381.733 kb on - strand, within HGI48_RS01730 at 381.772 kb on + strand, within HGI48_RS01730 at 381.773 kb on - strand, within HGI48_RS01730 at 381.773 kb on - strand, within HGI48_RS01730 at 381.950 kb on + strand, within HGI48_RS01730 at 381.951 kb on - strand, within HGI48_RS01730 at 381.957 kb on - strand, within HGI48_RS01730 at 381.957 kb on - strand, within HGI48_RS01730 at 382.069 kb on + strand, within HGI48_RS01730 at 382.069 kb on + strand, within HGI48_RS01730 at 382.069 kb on + strand, within HGI48_RS01730 at 382.069 kb on + strand, within HGI48_RS01730 at 382.069 kb on + strand, within HGI48_RS01730 at 382.069 kb on + strand, within HGI48_RS01730 at 382.069 kb on + strand, within HGI48_RS01730 at 382.069 kb on + strand, within HGI48_RS01730 at 382.069 kb on + strand at 382.070 kb on - strand, within HGI48_RS01730 at 382.070 kb on - strand, within HGI48_RS01730 at 382.070 kb on - strand, within HGI48_RS01730 at 382.070 kb on - strand, within HGI48_RS01730 at 382.070 kb on - strand, within HGI48_RS01730 at 382.078 kb on - strand, within HGI48_RS01730 at 382.096 kb on - strand, within HGI48_RS01730 at 382.096 kb on - strand, within HGI48_RS01730 at 382.160 kb on + strand, within HGI48_RS01730 at 382.160 kb on + strand, within HGI48_RS01730 at 382.160 kb on + strand at 382.160 kb on + strand, within HGI48_RS01730 at 382.194 kb on - strand, within HGI48_RS01730 at 382.194 kb on - strand, within HGI48_RS01730 at 382.194 kb on - strand at 382.296 kb on + strand at 382.296 kb on + strand at 382.297 kb on - strand at 382.297 kb on - strand at 382.297 kb on - strand at 382.297 kb on - strand at 382.297 kb on - strand at 382.361 kb on - strand at 382.361 kb on - strand at 382.361 kb on - strand at 382.361 kb on - strand at 382.361 kb on - strand at 382.377 kb on - strand at 382.394 kb on + strand at 382.394 kb on + strand at 382.394 kb on + strand at 382.401 kb on + strand at 382.401 kb on + strand at 382.438 kb on + strand at 382.439 kb on - strand at 382.439 kb on - strand at 382.512 kb on + strand at 382.512 kb on + strand at 382.603 kb on - strand at 382.603 kb on - strand at 382.710 kb on - strand at 382.809 kb on - strand, within HGI48_RS01735 at 382.809 kb on - strand at 382.877 kb on + strand, within HGI48_RS01735 at 382.877 kb on + strand, within HGI48_RS01735 at 382.877 kb on + strand, within HGI48_RS01735 at 382.877 kb on + strand, within HGI48_RS01735 at 382.877 kb on + strand, within HGI48_RS01735 at 382.877 kb on + strand, within HGI48_RS01735 at 382.877 kb on + strand, within HGI48_RS01735 at 382.877 kb on + strand, within HGI48_RS01735 at 382.877 kb on + strand, within HGI48_RS01735 at 382.878 kb on - strand, within HGI48_RS01735 at 382.878 kb on - strand, within HGI48_RS01735 at 382.878 kb on - strand, within HGI48_RS01735 at 382.878 kb on - strand, within HGI48_RS01735 at 382.878 kb on - strand, within HGI48_RS01735 at 382.878 kb on - strand, within HGI48_RS01735 at 382.878 kb on - strand, within HGI48_RS01735 at 382.878 kb on - strand at 382.878 kb on - strand, within HGI48_RS01735 at 382.878 kb on - strand, within HGI48_RS01735 at 382.878 kb on - strand, within HGI48_RS01735 at 382.878 kb on - strand, within HGI48_RS01735 at 382.878 kb on - strand, within HGI48_RS01735 at 382.878 kb on - strand, within HGI48_RS01735 at 382.878 kb on - strand, within HGI48_RS01735 at 383.028 kb on + strand, within HGI48_RS01735 at 383.035 kb on + strand, within HGI48_RS01735 at 383.037 kb on + strand, within HGI48_RS01735 at 383.037 kb on + strand, within HGI48_RS01735 at 383.037 kb on + strand, within HGI48_RS01735 at 383.038 kb on - strand at 383.038 kb on - strand, within HGI48_RS01735 at 383.038 kb on - strand, within HGI48_RS01735 at 383.038 kb on - strand, within HGI48_RS01735 at 383.038 kb on - strand, within HGI48_RS01735 at 383.061 kb on + strand, within HGI48_RS01735 at 383.061 kb on + strand, within HGI48_RS01735 at 383.062 kb on - strand, within HGI48_RS01735 at 383.062 kb on - strand, within HGI48_RS01735 at 383.221 kb on + strand, within HGI48_RS01735 at 383.221 kb on + strand, within HGI48_RS01735 at 383.222 kb on - strand, within HGI48_RS01735 at 383.259 kb on + strand, within HGI48_RS01735 at 383.260 kb on - strand at 383.441 kb on + strand, within HGI48_RS01735 at 383.441 kb on + strand, within HGI48_RS01735 at 383.441 kb on + strand, within HGI48_RS01735 at 383.441 kb on + strand, within HGI48_RS01735 at 383.442 kb on - strand, within HGI48_RS01735 at 383.462 kb on + strand, within HGI48_RS01735 at 383.463 kb on - strand, within HGI48_RS01735 at 383.463 kb on - strand, within HGI48_RS01735 at 383.478 kb on + strand, within HGI48_RS01735 at 383.479 kb on - strand, within HGI48_RS01735 at 383.479 kb on - strand, within HGI48_RS01735 at 383.479 kb on - strand, within HGI48_RS01735 at 383.479 kb on - strand, within HGI48_RS01735 at 383.482 kb on + strand, within HGI48_RS01735 at 383.482 kb on + strand, within HGI48_RS01735 at 383.482 kb on + strand, within HGI48_RS01735 at 383.482 kb on + strand, within HGI48_RS01735 at 383.482 kb on + strand, within HGI48_RS01735 at 383.483 kb on - strand, within HGI48_RS01735 at 383.483 kb on - strand, within HGI48_RS01735 at 383.483 kb on - strand, within HGI48_RS01735 at 383.636 kb on + strand, within HGI48_RS01735 at 383.636 kb on + strand, within HGI48_RS01735 at 383.636 kb on + strand, within HGI48_RS01735 at 383.636 kb on + strand, within HGI48_RS01735 at 383.637 kb on - strand, within HGI48_RS01735 at 383.637 kb on - strand, within HGI48_RS01735 at 383.637 kb on - strand, within HGI48_RS01735 at 383.674 kb on + strand at 383.675 kb on - strand at 383.675 kb on - strand at 383.675 kb on - strand at 383.677 kb on + strand at 383.724 kb on + strand at 383.724 kb on + strand at 383.724 kb on + strand at 383.725 kb on - strand at 383.725 kb on - strand at 383.725 kb on - strand at 383.743 kb on + strand at 383.761 kb on + strand at 383.761 kb on + strand at 383.762 kb on - strand at 383.762 kb on - strand at 383.770 kb on + strand at 383.770 kb on + strand at 383.771 kb on - strand at 383.771 kb on - strand at 383.771 kb on - strand at 383.771 kb on - strand at 383.771 kb on - strand at 383.788 kb on + strand at 383.788 kb on + strand at 383.788 kb on + strand at 383.789 kb on - strand at 383.865 kb on + strand at 384.098 kb on + strand, within HGI48_RS01740 at 384.098 kb on + strand, within HGI48_RS01740 at 384.099 kb on - strand, within HGI48_RS01740 at 384.099 kb on - strand, within HGI48_RS01740 at 384.121 kb on - strand, within HGI48_RS01740 at 384.178 kb on + strand, within HGI48_RS01740 at 384.202 kb on - strand, within HGI48_RS01740 at 384.202 kb on - strand, within HGI48_RS01740 at 384.202 kb on - strand, within HGI48_RS01740 at 384.236 kb on - strand, within HGI48_RS01740 at 384.495 kb on + strand, within HGI48_RS01740 at 384.495 kb on + strand, within HGI48_RS01740 at 384.495 kb on + strand, within HGI48_RS01740 at 384.495 kb on + strand, within HGI48_RS01740 at 384.495 kb on + strand, within HGI48_RS01740 at 384.495 kb on + strand, within HGI48_RS01740 at 384.495 kb on + strand, within HGI48_RS01740 at 384.495 kb on + strand, within HGI48_RS01740 at 384.495 kb on + strand, within HGI48_RS01740 at 384.495 kb on + strand, within HGI48_RS01740 at 384.495 kb on + strand, within HGI48_RS01740 at 384.495 kb on + strand, within HGI48_RS01740 at 384.495 kb on + strand, within HGI48_RS01740 at 384.496 kb on - strand, within HGI48_RS01740 at 384.496 kb on - strand at 384.496 kb on - strand, within HGI48_RS01740 at 384.496 kb on - strand, within HGI48_RS01740 at 384.496 kb on - strand, within HGI48_RS01740 at 384.496 kb on - strand, within HGI48_RS01740 at 384.496 kb on - strand, within HGI48_RS01740 at 384.496 kb on - strand, within HGI48_RS01740 at 384.496 kb on - strand, within HGI48_RS01740 at 384.729 kb on + strand, within HGI48_RS01740 at 384.729 kb on + strand, within HGI48_RS01740 at 384.769 kb on - strand, within HGI48_RS01740 at 384.769 kb on - strand, within HGI48_RS01740
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 381,537 + HGI48_RS01730 0.20 -1.6 381,537 + HGI48_RS01730 0.20 +2.6 381,538 - HGI48_RS01730 0.20 -2.0 381,538 - HGI48_RS01730 0.20 +1.8 381,538 - HGI48_RS01730 0.20 -1.4 381,631 - HGI48_RS01730 0.29 -2.8 381,703 + +2.2 381,704 - HGI48_RS01730 0.36 -1.1 381,733 - HGI48_RS01730 0.39 -1.8 381,733 - HGI48_RS01730 0.39 -1.6 381,772 + HGI48_RS01730 0.43 +1.2 381,773 - HGI48_RS01730 0.43 +0.8 381,773 - HGI48_RS01730 0.43 -2.4 381,950 + HGI48_RS01730 0.60 +1.7 381,951 - HGI48_RS01730 0.60 +1.0 381,957 - HGI48_RS01730 0.61 -0.7 381,957 - HGI48_RS01730 0.61 -3.0 382,069 + HGI48_RS01730 0.72 -0.8 382,069 + HGI48_RS01730 0.72 -1.1 382,069 + HGI48_RS01730 0.72 +1.2 382,069 + HGI48_RS01730 0.72 +0.9 382,069 + HGI48_RS01730 0.72 +0.4 382,069 + HGI48_RS01730 0.72 +1.7 382,069 + HGI48_RS01730 0.72 -1.6 382,069 + HGI48_RS01730 0.72 +0.6 382,069 + +0.2 382,070 - HGI48_RS01730 0.72 -2.3 382,070 - HGI48_RS01730 0.72 +0.6 382,070 - HGI48_RS01730 0.72 -0.8 382,070 - HGI48_RS01730 0.72 -1.8 382,070 - HGI48_RS01730 0.72 -2.0 382,078 - HGI48_RS01730 0.72 +1.7 382,096 - HGI48_RS01730 0.74 +0.1 382,096 - HGI48_RS01730 0.74 -2.1 382,160 + HGI48_RS01730 0.80 -2.0 382,160 + HGI48_RS01730 0.80 +0.9 382,160 + -0.4 382,160 + HGI48_RS01730 0.80 -1.1 382,194 - HGI48_RS01730 0.84 -0.3 382,194 - HGI48_RS01730 0.84 +2.9 382,194 - +0.2 382,296 + -1.1 382,296 + -2.3 382,297 - +1.5 382,297 - +0.8 382,297 - -0.8 382,297 - +0.2 382,297 - -0.4 382,361 - +0.2 382,361 - +1.2 382,361 - +0.3 382,361 - +1.0 382,361 - +0.8 382,377 - -0.8 382,394 + +2.5 382,394 + -3.3 382,394 + +3.9 382,401 + -2.9 382,401 + +0.2 382,438 + +0.4 382,439 - -1.8 382,439 - -0.6 382,512 + +0.2 382,512 + -2.0 382,603 - -2.0 382,603 - -2.5 382,710 - +0.2 382,809 - HGI48_RS01735 0.24 -2.4 382,809 - +5.1 382,877 + HGI48_RS01735 0.29 -1.6 382,877 + HGI48_RS01735 0.29 -0.8 382,877 + HGI48_RS01735 0.29 -2.0 382,877 + HGI48_RS01735 0.29 -0.7 382,877 + HGI48_RS01735 0.29 +0.6 382,877 + HGI48_RS01735 0.29 +2.5 382,877 + HGI48_RS01735 0.29 +1.7 382,877 + HGI48_RS01735 0.29 -1.4 382,877 + HGI48_RS01735 0.29 +1.9 382,878 - HGI48_RS01735 0.29 +0.5 382,878 - HGI48_RS01735 0.29 -2.1 382,878 - HGI48_RS01735 0.29 -0.8 382,878 - HGI48_RS01735 0.29 -2.0 382,878 - HGI48_RS01735 0.29 -1.8 382,878 - HGI48_RS01735 0.29 -0.1 382,878 - HGI48_RS01735 0.29 +0.3 382,878 - -0.4 382,878 - HGI48_RS01735 0.29 -2.5 382,878 - HGI48_RS01735 0.29 +1.6 382,878 - HGI48_RS01735 0.29 +0.4 382,878 - HGI48_RS01735 0.29 -0.8 382,878 - HGI48_RS01735 0.29 +1.4 382,878 - HGI48_RS01735 0.29 -1.8 382,878 - HGI48_RS01735 0.29 -3.3 383,028 + HGI48_RS01735 0.41 +1.2 383,035 + HGI48_RS01735 0.42 -1.1 383,037 + HGI48_RS01735 0.42 +2.2 383,037 + HGI48_RS01735 0.42 +0.1 383,037 + HGI48_RS01735 0.42 -1.1 383,038 - +0.2 383,038 - HGI48_RS01735 0.42 -0.6 383,038 - HGI48_RS01735 0.42 -2.4 383,038 - HGI48_RS01735 0.42 +1.2 383,038 - HGI48_RS01735 0.42 -2.4 383,061 + HGI48_RS01735 0.44 -0.8 383,061 + HGI48_RS01735 0.44 -2.1 383,062 - HGI48_RS01735 0.44 -0.4 383,062 - HGI48_RS01735 0.44 +1.0 383,221 + HGI48_RS01735 0.56 -1.8 383,221 + HGI48_RS01735 0.56 -0.0 383,222 - HGI48_RS01735 0.56 +1.2 383,259 + HGI48_RS01735 0.59 +1.1 383,260 - +1.2 383,441 + HGI48_RS01735 0.74 +3.8 383,441 + HGI48_RS01735 0.74 +0.7 383,441 + HGI48_RS01735 0.74 -0.0 383,441 + HGI48_RS01735 0.74 +0.4 383,442 - HGI48_RS01735 0.74 -1.6 383,462 + HGI48_RS01735 0.75 -1.4 383,463 - HGI48_RS01735 0.76 -0.8 383,463 - HGI48_RS01735 0.76 +1.9 383,478 + HGI48_RS01735 0.77 -0.1 383,479 - HGI48_RS01735 0.77 -1.4 383,479 - HGI48_RS01735 0.77 -0.0 383,479 - HGI48_RS01735 0.77 +1.7 383,479 - HGI48_RS01735 0.77 -1.8 383,482 + HGI48_RS01735 0.77 +1.6 383,482 + HGI48_RS01735 0.77 +0.9 383,482 + HGI48_RS01735 0.77 -3.0 383,482 + HGI48_RS01735 0.77 +1.2 383,482 + HGI48_RS01735 0.77 -1.8 383,483 - HGI48_RS01735 0.77 -0.1 383,483 - HGI48_RS01735 0.77 -1.4 383,483 - HGI48_RS01735 0.77 +1.6 383,636 + HGI48_RS01735 0.89 -2.0 383,636 + HGI48_RS01735 0.89 -2.4 383,636 + HGI48_RS01735 0.89 -1.1 383,636 + HGI48_RS01735 0.89 -1.4 383,637 - HGI48_RS01735 0.89 +2.8 383,637 - HGI48_RS01735 0.89 -1.1 383,637 - HGI48_RS01735 0.89 +2.5 383,674 + +1.5 383,675 - +1.2 383,675 - +0.3 383,675 - -1.6 383,677 + -1.4 383,724 + -0.1 383,724 + -1.1 383,724 + -1.1 383,725 - +1.7 383,725 - -2.3 383,725 - -2.3 383,743 + -0.4 383,761 + -0.8 383,761 + +2.0 383,762 - -1.6 383,762 - +1.2 383,770 + +4.1 383,770 + +2.8 383,771 - -1.1 383,771 - -0.8 383,771 - +2.9 383,771 - +0.2 383,771 - +1.6 383,788 + +1.6 383,788 + +0.4 383,788 + +1.9 383,789 - +0.9 383,865 + -1.4 384,098 + HGI48_RS01740 0.22 -0.8 384,098 + HGI48_RS01740 0.22 -0.8 384,099 - HGI48_RS01740 0.22 -1.6 384,099 - HGI48_RS01740 0.22 +0.2 384,121 - HGI48_RS01740 0.23 -1.1 384,178 + HGI48_RS01740 0.27 +0.3 384,202 - HGI48_RS01740 0.29 -1.4 384,202 - HGI48_RS01740 0.29 -1.0 384,202 - HGI48_RS01740 0.29 -1.4 384,236 - HGI48_RS01740 0.31 +0.2 384,495 + HGI48_RS01740 0.49 +0.4 384,495 + HGI48_RS01740 0.49 -1.4 384,495 + HGI48_RS01740 0.49 +1.0 384,495 + HGI48_RS01740 0.49 -1.1 384,495 + HGI48_RS01740 0.49 +1.5 384,495 + HGI48_RS01740 0.49 -0.8 384,495 + HGI48_RS01740 0.49 +1.5 384,495 + HGI48_RS01740 0.49 -0.0 384,495 + HGI48_RS01740 0.49 +0.2 384,495 + HGI48_RS01740 0.49 -1.4 384,495 + HGI48_RS01740 0.49 -0.0 384,495 + HGI48_RS01740 0.49 +1.7 384,495 + HGI48_RS01740 0.49 +0.4 384,496 - HGI48_RS01740 0.49 -1.4 384,496 - +2.8 384,496 - HGI48_RS01740 0.49 +0.4 384,496 - HGI48_RS01740 0.49 +2.8 384,496 - HGI48_RS01740 0.49 -1.1 384,496 - HGI48_RS01740 0.49 +0.8 384,496 - HGI48_RS01740 0.49 -1.7 384,496 - HGI48_RS01740 0.49 -1.4 384,496 - HGI48_RS01740 0.49 -1.4 384,729 + HGI48_RS01740 0.64 +1.2 384,729 + HGI48_RS01740 0.64 +0.7 384,769 - HGI48_RS01740 0.67 +0.9 384,769 - HGI48_RS01740 0.67 -0.8
Or see this region's nucleotide sequence