Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS01390

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS01385 and HGI48_RS01390 are separated by 337 nucleotidesHGI48_RS01390 and HGI48_RS01395 are separated by 31 nucleotidesHGI48_RS01395 and HGI48_RS01400 are separated by 13 nucleotides HGI48_RS01385: HGI48_RS01385 - HTH-type transcriptional activator AaeR, at 310,574 to 311,518 _RS01385 HGI48_RS01390: HGI48_RS01390 - AaeX family protein, at 311,856 to 312,059 _RS01390 HGI48_RS01395: HGI48_RS01395 - p-hydroxybenzoic acid efflux pump subunit AaeA, at 312,091 to 313,014 _RS01395 HGI48_RS01400: HGI48_RS01400 - p-hydroxybenzoic acid efflux pump subunit AaeB, at 313,028 to 314,977 _RS01400 Position (kb) 311 312 313Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 310.944 kb on + strand, within HGI48_RS01385at 310.945 kb on - strand, within HGI48_RS01385at 311.007 kb on + strand, within HGI48_RS01385at 311.008 kb on - strand, within HGI48_RS01385at 311.028 kb on - strand, within HGI48_RS01385at 311.058 kb on + strand, within HGI48_RS01385at 311.058 kb on + strand, within HGI48_RS01385at 311.059 kb on - strand, within HGI48_RS01385at 311.059 kb on - strand, within HGI48_RS01385at 311.134 kb on + strand, within HGI48_RS01385at 311.134 kb on + strand, within HGI48_RS01385at 311.135 kb on - strand, within HGI48_RS01385at 311.191 kb on + strand, within HGI48_RS01385at 311.191 kb on + strand, within HGI48_RS01385at 311.191 kb on + strand, within HGI48_RS01385at 311.191 kb on + strand, within HGI48_RS01385at 311.191 kb on + strand, within HGI48_RS01385at 311.192 kb on - strand, within HGI48_RS01385at 311.192 kb on - strand, within HGI48_RS01385at 311.195 kb on - strand, within HGI48_RS01385at 311.243 kb on - strand, within HGI48_RS01385at 311.268 kb on + strandat 311.268 kb on + strand, within HGI48_RS01385at 311.268 kb on + strand, within HGI48_RS01385at 311.268 kb on + strand, within HGI48_RS01385at 311.268 kb on + strand, within HGI48_RS01385at 311.268 kb on + strandat 311.268 kb on + strand, within HGI48_RS01385at 311.269 kb on - strand, within HGI48_RS01385at 311.269 kb on - strand, within HGI48_RS01385at 311.269 kb on - strandat 311.269 kb on - strand, within HGI48_RS01385at 311.269 kb on - strandat 311.269 kb on - strand, within HGI48_RS01385at 311.269 kb on - strandat 311.269 kb on - strand, within HGI48_RS01385at 311.270 kb on + strand, within HGI48_RS01385at 311.270 kb on + strand, within HGI48_RS01385at 311.270 kb on + strand, within HGI48_RS01385at 311.271 kb on - strand, within HGI48_RS01385at 311.271 kb on - strand, within HGI48_RS01385at 311.271 kb on - strand, within HGI48_RS01385at 311.271 kb on - strand, within HGI48_RS01385at 311.271 kb on - strand, within HGI48_RS01385at 311.325 kb on + strand, within HGI48_RS01385at 311.325 kb on + strand, within HGI48_RS01385at 311.325 kb on + strand, within HGI48_RS01385at 311.325 kb on + strand, within HGI48_RS01385at 311.325 kb on + strandat 311.387 kb on + strand, within HGI48_RS01385at 311.387 kb on + strand, within HGI48_RS01385at 311.388 kb on - strand, within HGI48_RS01385at 311.388 kb on - strand, within HGI48_RS01385at 311.388 kb on - strand, within HGI48_RS01385at 311.508 kb on - strandat 311.558 kb on + strandat 311.558 kb on + strandat 311.559 kb on - strandat 311.570 kb on + strandat 311.573 kb on + strandat 311.586 kb on + strandat 311.586 kb on + strandat 311.587 kb on - strandat 311.587 kb on - strandat 311.587 kb on - strandat 311.587 kb on - strandat 311.588 kb on + strandat 311.669 kb on + strandat 311.669 kb on + strandat 311.669 kb on + strandat 311.669 kb on + strandat 311.684 kb on + strandat 311.692 kb on - strandat 311.716 kb on - strandat 311.775 kb on - strandat 311.775 kb on - strandat 311.784 kb on + strandat 311.784 kb on + strandat 311.785 kb on - strandat 311.949 kb on - strand, within HGI48_RS01390at 311.976 kb on + strandat 311.976 kb on + strand, within HGI48_RS01390at 311.977 kb on - strand, within HGI48_RS01390at 311.977 kb on - strand, within HGI48_RS01390at 311.977 kb on - strand, within HGI48_RS01390at 311.977 kb on - strandat 311.977 kb on - strand, within HGI48_RS01390at 312.005 kb on + strand, within HGI48_RS01390at 312.006 kb on - strand, within HGI48_RS01390at 312.009 kb on - strand, within HGI48_RS01390at 312.009 kb on - strand, within HGI48_RS01390at 312.033 kb on + strand, within HGI48_RS01390at 312.033 kb on + strand, within HGI48_RS01390at 312.033 kb on + strand, within HGI48_RS01390at 312.034 kb on - strand, within HGI48_RS01390at 312.125 kb on + strandat 312.126 kb on - strandat 312.176 kb on - strandat 312.367 kb on + strand, within HGI48_RS01395at 312.368 kb on - strand, within HGI48_RS01395at 312.370 kb on + strand, within HGI48_RS01395at 312.370 kb on + strand, within HGI48_RS01395at 312.370 kb on + strand, within HGI48_RS01395at 312.544 kb on - strand, within HGI48_RS01395at 312.590 kb on + strand, within HGI48_RS01395at 312.590 kb on + strand, within HGI48_RS01395at 312.590 kb on + strand, within HGI48_RS01395at 312.590 kb on + strand, within HGI48_RS01395at 312.590 kb on + strand, within HGI48_RS01395at 312.590 kb on + strand, within HGI48_RS01395at 312.590 kb on + strandat 312.590 kb on + strand, within HGI48_RS01395at 312.590 kb on + strand, within HGI48_RS01395at 312.590 kb on + strandat 312.591 kb on - strand, within HGI48_RS01395at 312.591 kb on - strand, within HGI48_RS01395at 312.591 kb on - strand, within HGI48_RS01395at 312.591 kb on - strand, within HGI48_RS01395at 312.591 kb on - strand, within HGI48_RS01395at 312.591 kb on - strand, within HGI48_RS01395at 312.591 kb on - strand, within HGI48_RS01395at 312.591 kb on - strand, within HGI48_RS01395at 312.591 kb on - strand, within HGI48_RS01395at 312.604 kb on + strand, within HGI48_RS01395at 312.604 kb on + strand, within HGI48_RS01395at 312.605 kb on - strand, within HGI48_RS01395at 312.605 kb on - strand, within HGI48_RS01395at 312.655 kb on + strand, within HGI48_RS01395at 312.655 kb on + strand, within HGI48_RS01395at 312.667 kb on + strand, within HGI48_RS01395at 312.667 kb on + strand, within HGI48_RS01395at 312.667 kb on + strand, within HGI48_RS01395at 312.667 kb on + strand, within HGI48_RS01395at 312.667 kb on + strandat 312.668 kb on - strand, within HGI48_RS01395at 312.668 kb on - strand, within HGI48_RS01395at 312.670 kb on - strand, within HGI48_RS01395at 312.779 kb on + strand, within HGI48_RS01395at 312.949 kb on - strandat 312.949 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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310,944 + HGI48_RS01385 0.39 -2.1
310,945 - HGI48_RS01385 0.39 -1.4
311,007 + HGI48_RS01385 0.46 -1.6
311,008 - HGI48_RS01385 0.46 +0.9
311,028 - HGI48_RS01385 0.48 +0.5
311,058 + HGI48_RS01385 0.51 -2.1
311,058 + HGI48_RS01385 0.51 +1.1
311,059 - HGI48_RS01385 0.51 +0.3
311,059 - HGI48_RS01385 0.51 +1.8
311,134 + HGI48_RS01385 0.59 +0.7
311,134 + HGI48_RS01385 0.59 -1.4
311,135 - HGI48_RS01385 0.59 -2.5
311,191 + HGI48_RS01385 0.65 +0.2
311,191 + HGI48_RS01385 0.65 -0.8
311,191 + HGI48_RS01385 0.65 -1.4
311,191 + HGI48_RS01385 0.65 -0.1
311,191 + HGI48_RS01385 0.65 -1.4
311,192 - HGI48_RS01385 0.65 -2.5
311,192 - HGI48_RS01385 0.65 -4.0
311,195 - HGI48_RS01385 0.66 -0.4
311,243 - HGI48_RS01385 0.71 +1.2
311,268 + +3.1
311,268 + HGI48_RS01385 0.73 -0.8
311,268 + HGI48_RS01385 0.73 +2.8
311,268 + HGI48_RS01385 0.73 -3.5
311,268 + HGI48_RS01385 0.73 -0.8
311,268 + +0.2
311,268 + HGI48_RS01385 0.73 +1.7
311,269 - HGI48_RS01385 0.74 +0.8
311,269 - HGI48_RS01385 0.74 -1.1
311,269 - +0.2
311,269 - HGI48_RS01385 0.74 -0.3
311,269 - -0.4
311,269 - HGI48_RS01385 0.74 -1.4
311,269 - +3.5
311,269 - HGI48_RS01385 0.74 +0.6
311,270 + HGI48_RS01385 0.74 +0.2
311,270 + HGI48_RS01385 0.74 -1.9
311,270 + HGI48_RS01385 0.74 +0.1
311,271 - HGI48_RS01385 0.74 +0.6
311,271 - HGI48_RS01385 0.74 +0.4
311,271 - HGI48_RS01385 0.74 -1.6
311,271 - HGI48_RS01385 0.74 -1.8
311,271 - HGI48_RS01385 0.74 -1.4
311,325 + HGI48_RS01385 0.79 -0.4
311,325 + HGI48_RS01385 0.79 -1.3
311,325 + HGI48_RS01385 0.79 -1.9
311,325 + HGI48_RS01385 0.79 -0.4
311,325 + -0.4
311,387 + HGI48_RS01385 0.86 -1.6
311,387 + HGI48_RS01385 0.86 -1.9
311,388 - HGI48_RS01385 0.86 -0.1
311,388 - HGI48_RS01385 0.86 -2.0
311,388 - HGI48_RS01385 0.86 -0.8
311,508 - +0.1
311,558 + -0.0
311,558 + +2.1
311,559 - -1.4
311,570 + +0.5
311,573 + -2.5
311,586 + +2.0
311,586 + -0.8
311,587 - -2.6
311,587 - -2.6
311,587 - -1.3
311,587 - -2.1
311,588 + +0.1
311,669 + -2.1
311,669 + -0.5
311,669 + -0.4
311,669 + -0.8
311,684 + -0.8
311,692 - -1.4
311,716 - -1.4
311,775 - -3.1
311,775 - +0.2
311,784 + -1.4
311,784 + -1.4
311,785 - -1.4
311,949 - HGI48_RS01390 0.46 +0.6
311,976 + -0.4
311,976 + HGI48_RS01390 0.59 -0.8
311,977 - HGI48_RS01390 0.59 +0.8
311,977 - HGI48_RS01390 0.59 -1.8
311,977 - HGI48_RS01390 0.59 -2.7
311,977 - +2.2
311,977 - HGI48_RS01390 0.59 +1.2
312,005 + HGI48_RS01390 0.73 +0.4
312,006 - HGI48_RS01390 0.74 -2.5
312,009 - HGI48_RS01390 0.75 +0.0
312,009 - HGI48_RS01390 0.75 +2.4
312,033 + HGI48_RS01390 0.87 -0.5
312,033 + HGI48_RS01390 0.87 +0.1
312,033 + HGI48_RS01390 0.87 +0.6
312,034 - HGI48_RS01390 0.87 +1.0
312,125 + +0.1
312,126 - -1.9
312,176 - -0.4
312,367 + HGI48_RS01395 0.30 +2.2
312,368 - HGI48_RS01395 0.30 -0.3
312,370 + HGI48_RS01395 0.30 +0.9
312,370 + HGI48_RS01395 0.30 +2.7
312,370 + HGI48_RS01395 0.30 -2.1
312,544 - HGI48_RS01395 0.49 +1.7
312,590 + HGI48_RS01395 0.54 +0.2
312,590 + HGI48_RS01395 0.54 +0.7
312,590 + HGI48_RS01395 0.54 -2.2
312,590 + HGI48_RS01395 0.54 -1.6
312,590 + HGI48_RS01395 0.54 -0.8
312,590 + HGI48_RS01395 0.54 -1.4
312,590 + +2.0
312,590 + HGI48_RS01395 0.54 +0.5
312,590 + HGI48_RS01395 0.54 -0.8
312,590 + +1.6
312,591 - HGI48_RS01395 0.54 +0.3
312,591 - HGI48_RS01395 0.54 -2.6
312,591 - HGI48_RS01395 0.54 +1.8
312,591 - HGI48_RS01395 0.54 +0.6
312,591 - HGI48_RS01395 0.54 +0.4
312,591 - HGI48_RS01395 0.54 -1.4
312,591 - HGI48_RS01395 0.54 +1.6
312,591 - HGI48_RS01395 0.54 +1.0
312,591 - HGI48_RS01395 0.54 -2.1
312,604 + HGI48_RS01395 0.56 -0.6
312,604 + HGI48_RS01395 0.56 -1.1
312,605 - HGI48_RS01395 0.56 -1.4
312,605 - HGI48_RS01395 0.56 +0.1
312,655 + HGI48_RS01395 0.61 -1.4
312,655 + HGI48_RS01395 0.61 +0.8
312,667 + HGI48_RS01395 0.62 -1.6
312,667 + HGI48_RS01395 0.62 -2.9
312,667 + HGI48_RS01395 0.62 +1.9
312,667 + HGI48_RS01395 0.62 -1.9
312,667 + -0.4
312,668 - HGI48_RS01395 0.62 +1.4
312,668 - HGI48_RS01395 0.62 -1.1
312,670 - HGI48_RS01395 0.63 -0.8
312,779 + HGI48_RS01395 0.74 -0.8
312,949 - -1.1
312,949 - -1.8

Or see this region's nucleotide sequence