Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01335 and HGI48_RS01340 are separated by 193 nucleotides HGI48_RS01340 and HGI48_RS01345 are separated by 152 nucleotides
HGI48_RS01335: HGI48_RS01335 - protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 295,658 to 296,659
_RS01335
HGI48_RS01340: HGI48_RS01340 - oxidoreductase, at 296,853 to 297,839
_RS01340
HGI48_RS01345: HGI48_RS01345 - RNase E specificity factor CsrD, at 297,992 to 299,938
_RS01345
Position (kb) 296
297
298 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 295.857 kb on - strand at 295.867 kb on + strand, within HGI48_RS01335 at 295.912 kb on + strand, within HGI48_RS01335 at 295.912 kb on + strand, within HGI48_RS01335 at 295.912 kb on + strand, within HGI48_RS01335 at 295.912 kb on + strand at 295.912 kb on + strand at 295.912 kb on + strand, within HGI48_RS01335 at 295.912 kb on + strand, within HGI48_RS01335 at 295.912 kb on + strand, within HGI48_RS01335 at 295.913 kb on - strand, within HGI48_RS01335 at 295.913 kb on - strand, within HGI48_RS01335 at 295.913 kb on - strand, within HGI48_RS01335 at 295.913 kb on - strand, within HGI48_RS01335 at 295.913 kb on - strand, within HGI48_RS01335 at 295.913 kb on - strand at 295.913 kb on - strand, within HGI48_RS01335 at 295.922 kb on - strand, within HGI48_RS01335 at 295.929 kb on + strand, within HGI48_RS01335 at 295.989 kb on + strand, within HGI48_RS01335 at 295.991 kb on + strand, within HGI48_RS01335 at 296.040 kb on - strand, within HGI48_RS01335 at 296.040 kb on - strand, within HGI48_RS01335 at 296.040 kb on - strand, within HGI48_RS01335 at 296.052 kb on + strand, within HGI48_RS01335 at 296.052 kb on + strand, within HGI48_RS01335 at 296.059 kb on - strand, within HGI48_RS01335 at 296.059 kb on - strand, within HGI48_RS01335 at 296.137 kb on - strand, within HGI48_RS01335 at 296.137 kb on - strand at 296.169 kb on - strand, within HGI48_RS01335 at 296.239 kb on - strand, within HGI48_RS01335 at 296.341 kb on + strand, within HGI48_RS01335 at 296.341 kb on + strand, within HGI48_RS01335 at 296.341 kb on + strand, within HGI48_RS01335 at 296.342 kb on - strand at 296.403 kb on + strand, within HGI48_RS01335 at 296.708 kb on + strand at 296.708 kb on + strand at 296.708 kb on + strand at 296.708 kb on + strand at 296.709 kb on - strand at 296.709 kb on - strand at 296.709 kb on - strand at 296.745 kb on + strand at 296.745 kb on + strand at 296.745 kb on + strand at 296.746 kb on - strand at 296.746 kb on - strand at 296.746 kb on - strand at 296.746 kb on - strand at 296.746 kb on - strand at 296.746 kb on - strand at 296.757 kb on + strand at 296.757 kb on + strand at 296.757 kb on + strand at 296.757 kb on + strand at 296.757 kb on + strand at 296.757 kb on + strand at 296.758 kb on - strand at 296.758 kb on - strand at 296.758 kb on - strand at 296.795 kb on - strand at 296.795 kb on - strand at 296.797 kb on + strand at 296.797 kb on + strand at 296.797 kb on + strand at 296.798 kb on - strand at 296.800 kb on + strand at 296.801 kb on - strand at 296.806 kb on + strand at 296.965 kb on + strand, within HGI48_RS01340 at 296.966 kb on - strand, within HGI48_RS01340 at 296.966 kb on - strand, within HGI48_RS01340 at 297.057 kb on + strand, within HGI48_RS01340 at 297.057 kb on + strand at 297.057 kb on + strand, within HGI48_RS01340 at 297.057 kb on + strand at 297.058 kb on - strand at 297.058 kb on - strand, within HGI48_RS01340 at 297.058 kb on - strand, within HGI48_RS01340 at 297.058 kb on - strand, within HGI48_RS01340 at 297.058 kb on - strand, within HGI48_RS01340 at 297.058 kb on - strand, within HGI48_RS01340 at 297.058 kb on - strand, within HGI48_RS01340 at 297.058 kb on - strand, within HGI48_RS01340 at 297.071 kb on + strand, within HGI48_RS01340 at 297.071 kb on + strand, within HGI48_RS01340 at 297.283 kb on + strand at 297.283 kb on + strand at 297.693 kb on - strand, within HGI48_RS01340 at 297.698 kb on + strand, within HGI48_RS01340 at 297.702 kb on - strand, within HGI48_RS01340 at 297.702 kb on - strand, within HGI48_RS01340 at 297.716 kb on + strand, within HGI48_RS01340 at 297.717 kb on - strand, within HGI48_RS01340 at 297.717 kb on - strand, within HGI48_RS01340 at 297.717 kb on - strand, within HGI48_RS01340 at 297.717 kb on - strand, within HGI48_RS01340 at 297.717 kb on - strand, within HGI48_RS01340 at 297.718 kb on + strand, within HGI48_RS01340 at 297.718 kb on + strand, within HGI48_RS01340 at 297.718 kb on + strand, within HGI48_RS01340 at 297.718 kb on + strand at 297.718 kb on + strand at 297.718 kb on + strand, within HGI48_RS01340 at 297.718 kb on + strand, within HGI48_RS01340 at 297.719 kb on - strand, within HGI48_RS01340 at 297.719 kb on - strand, within HGI48_RS01340 at 297.719 kb on - strand, within HGI48_RS01340 at 297.719 kb on - strand, within HGI48_RS01340 at 297.765 kb on + strand at 297.765 kb on + strand at 297.766 kb on - strand at 297.826 kb on - strand at 297.829 kb on - strand at 297.840 kb on - strand at 297.867 kb on + strand at 297.868 kb on - strand at 297.873 kb on + strand at 297.873 kb on + strand at 297.873 kb on + strand at 297.873 kb on + strand at 297.874 kb on - strand at 297.874 kb on - strand at 297.874 kb on - strand at 297.882 kb on + strand at 297.882 kb on + strand at 297.883 kb on - strand at 297.890 kb on - strand at 297.890 kb on - strand at 297.890 kb on - strand at 297.890 kb on - strand at 297.890 kb on - strand at 297.890 kb on - strand at 297.891 kb on + strand at 297.892 kb on - strand at 297.892 kb on - strand at 297.892 kb on - strand at 297.892 kb on - strand at 297.892 kb on - strand at 297.892 kb on - strand at 297.907 kb on + strand at 297.908 kb on - strand at 297.919 kb on + strand at 298.017 kb on + strand at 298.053 kb on + strand at 298.053 kb on + strand at 298.053 kb on + strand at 298.054 kb on - strand at 298.054 kb on - strand at 298.054 kb on - strand at 298.054 kb on - strand at 298.088 kb on + strand at 298.088 kb on + strand at 298.088 kb on + strand at 298.088 kb on + strand at 298.089 kb on - strand at 298.089 kb on - strand at 298.089 kb on - strand at 298.090 kb on + strand at 298.090 kb on + strand at 298.091 kb on - strand at 298.091 kb on - strand at 298.250 kb on + strand, within HGI48_RS01345 at 298.250 kb on + strand, within HGI48_RS01345 at 298.250 kb on + strand, within HGI48_RS01345 at 298.250 kb on + strand at 298.250 kb on + strand, within HGI48_RS01345 at 298.251 kb on - strand, within HGI48_RS01345 at 298.251 kb on - strand, within HGI48_RS01345 at 298.254 kb on + strand, within HGI48_RS01345 at 298.254 kb on + strand, within HGI48_RS01345 at 298.255 kb on - strand at 298.255 kb on - strand, within HGI48_RS01345 at 298.257 kb on + strand, within HGI48_RS01345 at 298.257 kb on + strand, within HGI48_RS01345 at 298.257 kb on + strand, within HGI48_RS01345 at 298.258 kb on - strand, within HGI48_RS01345 at 298.258 kb on - strand, within HGI48_RS01345 at 298.258 kb on - strand at 298.258 kb on - strand, within HGI48_RS01345 at 298.305 kb on - strand, within HGI48_RS01345 at 298.361 kb on + strand, within HGI48_RS01345 at 298.362 kb on - strand, within HGI48_RS01345 at 298.362 kb on - strand, within HGI48_RS01345 at 298.383 kb on + strand, within HGI48_RS01345 at 298.384 kb on - strand, within HGI48_RS01345 at 298.392 kb on - strand, within HGI48_RS01345 at 298.521 kb on + strand, within HGI48_RS01345 at 298.652 kb on - strand, within HGI48_RS01345 at 298.694 kb on - strand, within HGI48_RS01345 at 298.818 kb on - strand, within HGI48_RS01345 at 298.838 kb on + strand, within HGI48_RS01345 at 298.839 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 295,857 - -0.4 295,867 + HGI48_RS01335 0.21 +1.1 295,912 + HGI48_RS01335 0.25 -0.8 295,912 + HGI48_RS01335 0.25 -1.8 295,912 + HGI48_RS01335 0.25 -0.7 295,912 + -0.4 295,912 + +2.8 295,912 + HGI48_RS01335 0.25 -0.8 295,912 + HGI48_RS01335 0.25 -2.2 295,912 + HGI48_RS01335 0.25 +1.8 295,913 - HGI48_RS01335 0.25 -1.6 295,913 - HGI48_RS01335 0.25 -0.0 295,913 - HGI48_RS01335 0.25 -1.8 295,913 - HGI48_RS01335 0.25 +1.3 295,913 - HGI48_RS01335 0.25 -1.1 295,913 - -0.4 295,913 - HGI48_RS01335 0.25 -0.4 295,922 - HGI48_RS01335 0.26 -0.3 295,929 + HGI48_RS01335 0.27 -0.8 295,989 + HGI48_RS01335 0.33 -1.0 295,991 + HGI48_RS01335 0.33 -0.6 296,040 - HGI48_RS01335 0.38 -2.1 296,040 - HGI48_RS01335 0.38 +0.2 296,040 - HGI48_RS01335 0.38 -1.4 296,052 + HGI48_RS01335 0.39 -0.3 296,052 + HGI48_RS01335 0.39 -0.8 296,059 - HGI48_RS01335 0.40 +0.7 296,059 - HGI48_RS01335 0.40 +0.2 296,137 - HGI48_RS01335 0.48 -2.1 296,137 - +0.2 296,169 - HGI48_RS01335 0.51 -1.8 296,239 - HGI48_RS01335 0.58 -3.2 296,341 + HGI48_RS01335 0.68 -2.6 296,341 + HGI48_RS01335 0.68 -1.1 296,341 + HGI48_RS01335 0.68 -1.1 296,342 - +0.2 296,403 + HGI48_RS01335 0.74 -1.8 296,708 + +0.2 296,708 + -1.1 296,708 + +1.2 296,708 + -2.4 296,709 - +1.6 296,709 - -0.4 296,709 - -0.5 296,745 + -1.6 296,745 + +1.1 296,745 + -2.2 296,746 - +0.4 296,746 - -0.9 296,746 - -1.6 296,746 - -0.4 296,746 - +2.1 296,746 - +0.1 296,757 + -1.1 296,757 + -1.4 296,757 + -1.8 296,757 + -0.8 296,757 + -0.4 296,757 + -0.8 296,758 - +0.4 296,758 - +2.5 296,758 - +0.8 296,795 - +3.6 296,795 - +0.3 296,797 + +0.4 296,797 + -2.6 296,797 + -0.3 296,798 - -0.8 296,800 + +2.4 296,801 - -1.7 296,806 + +1.6 296,965 + HGI48_RS01340 0.11 -0.0 296,966 - HGI48_RS01340 0.11 +0.5 296,966 - HGI48_RS01340 0.11 -0.8 297,057 + HGI48_RS01340 0.21 -1.1 297,057 + -0.4 297,057 + HGI48_RS01340 0.21 -0.1 297,057 + +0.2 297,058 - -0.4 297,058 - HGI48_RS01340 0.21 -1.8 297,058 - HGI48_RS01340 0.21 -0.8 297,058 - HGI48_RS01340 0.21 +0.8 297,058 - HGI48_RS01340 0.21 +0.3 297,058 - HGI48_RS01340 0.21 +0.1 297,058 - HGI48_RS01340 0.21 -1.9 297,058 - HGI48_RS01340 0.21 -2.1 297,071 + HGI48_RS01340 0.22 +2.5 297,071 + HGI48_RS01340 0.22 -0.8 297,283 + -0.4 297,283 + +1.2 297,693 - HGI48_RS01340 0.85 -0.3 297,698 + HGI48_RS01340 0.86 +2.0 297,702 - HGI48_RS01340 0.86 -0.1 297,702 - HGI48_RS01340 0.86 +0.2 297,716 + HGI48_RS01340 0.87 +0.2 297,717 - HGI48_RS01340 0.88 -0.0 297,717 - HGI48_RS01340 0.88 -1.1 297,717 - HGI48_RS01340 0.88 +0.5 297,717 - HGI48_RS01340 0.88 +0.3 297,717 - HGI48_RS01340 0.88 +1.2 297,718 + HGI48_RS01340 0.88 -0.1 297,718 + HGI48_RS01340 0.88 -1.6 297,718 + HGI48_RS01340 0.88 -0.4 297,718 + -0.4 297,718 + +3.0 297,718 + HGI48_RS01340 0.88 +0.4 297,718 + HGI48_RS01340 0.88 -1.6 297,719 - HGI48_RS01340 0.88 -1.4 297,719 - HGI48_RS01340 0.88 +3.0 297,719 - HGI48_RS01340 0.88 -3.1 297,719 - HGI48_RS01340 0.88 -1.6 297,765 + +2.8 297,765 + +1.2 297,766 - -2.1 297,826 - +0.7 297,829 - -1.6 297,840 - -1.4 297,867 + +0.7 297,868 - +0.4 297,873 + +1.4 297,873 + -0.4 297,873 + +0.9 297,873 + +3.2 297,874 - -1.1 297,874 - +1.1 297,874 - -0.7 297,882 + +3.6 297,882 + -1.4 297,883 - +0.2 297,890 - -0.8 297,890 - +0.5 297,890 - +2.6 297,890 - +1.8 297,890 - -2.9 297,890 - +2.4 297,891 + -0.8 297,892 - -0.8 297,892 - -2.4 297,892 - +0.9 297,892 - +0.5 297,892 - -2.1 297,892 - +0.8 297,907 + -0.4 297,908 - +1.5 297,919 + -1.8 298,017 + -0.4 298,053 + +2.4 298,053 + -0.6 298,053 + +2.4 298,054 - -0.8 298,054 - +2.1 298,054 - -0.4 298,054 - -1.6 298,088 + -1.4 298,088 + -1.4 298,088 + -1.1 298,088 + -0.3 298,089 - -2.9 298,089 - -0.4 298,089 - +2.0 298,090 + +1.9 298,090 + -0.9 298,091 - -1.1 298,091 - -0.2 298,250 + HGI48_RS01345 0.13 -2.7 298,250 + HGI48_RS01345 0.13 +3.5 298,250 + HGI48_RS01345 0.13 -1.4 298,250 + -0.4 298,250 + HGI48_RS01345 0.13 +0.2 298,251 - HGI48_RS01345 0.13 +0.6 298,251 - HGI48_RS01345 0.13 -0.8 298,254 + HGI48_RS01345 0.13 +1.6 298,254 + HGI48_RS01345 0.13 -1.6 298,255 - +1.2 298,255 - HGI48_RS01345 0.14 -2.6 298,257 + HGI48_RS01345 0.14 -2.7 298,257 + HGI48_RS01345 0.14 -1.2 298,257 + HGI48_RS01345 0.14 +0.6 298,258 - HGI48_RS01345 0.14 +3.5 298,258 - HGI48_RS01345 0.14 +0.6 298,258 - -0.4 298,258 - HGI48_RS01345 0.14 +1.2 298,305 - HGI48_RS01345 0.16 -2.7 298,361 + HGI48_RS01345 0.19 -1.4 298,362 - HGI48_RS01345 0.19 +0.0 298,362 - HGI48_RS01345 0.19 -1.1 298,383 + HGI48_RS01345 0.20 +1.9 298,384 - HGI48_RS01345 0.20 +0.7 298,392 - HGI48_RS01345 0.21 -2.1 298,521 + HGI48_RS01345 0.27 +1.4 298,652 - HGI48_RS01345 0.34 +0.4 298,694 - HGI48_RS01345 0.36 -2.7 298,818 - HGI48_RS01345 0.42 -2.2 298,838 + HGI48_RS01345 0.43 +0.5 298,839 - +1.6
Or see this region's nucleotide sequence