Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00335

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
86,107	+		HGI48_RS00330	0.25	-1.8
86,108	-		HGI48_RS00330	0.25	-2.6
86,170	+		HGI48_RS00330	0.30	-1.9
86,251	+		HGI48_RS00330	0.36	-1.8
86,266	+		HGI48_RS00330	0.37	+1.6
86,266	+		HGI48_RS00330	0.37	+0.5
86,266	+		HGI48_RS00330	0.37	+1.9
86,267	-		HGI48_RS00330	0.37	+0.9
86,302	+		HGI48_RS00330	0.40	-1.3
86,303	-		HGI48_RS00330	0.40	-0.6
86,303	-				+1.7
86,303	-		HGI48_RS00330	0.40	+1.1
86,303	-		HGI48_RS00330	0.40	+0.0
86,303	-		HGI48_RS00330	0.40	-1.1
86,435	+		HGI48_RS00330	0.51	-1.3
86,435	+		HGI48_RS00330	0.51	+0.2
86,435	+		HGI48_RS00330	0.51	+2.3
86,435	+		HGI48_RS00330	0.51	-1.8
86,435	+		HGI48_RS00330	0.51	+0.9
86,435	+		HGI48_RS00330	0.51	-0.5
86,645	+		HGI48_RS00330	0.67	+1.7
86,645	+		HGI48_RS00330	0.67	+0.0
86,645	+		HGI48_RS00330	0.67	+0.9
86,645	+		HGI48_RS00330	0.67	+2.0
86,645	+		HGI48_RS00330	0.67	+1.1
86,646	-		HGI48_RS00330	0.67	+0.0
86,646	-		HGI48_RS00330	0.67	-2.1
86,646	-		HGI48_RS00330	0.67	-0.7
86,697	+				-0.3
86,697	+		HGI48_RS00330	0.71	-2.8
86,844	+		HGI48_RS00330	0.83	-2.5
86,845	-		HGI48_RS00330	0.83	+1.0
86,845	-		HGI48_RS00330	0.83	-1.6
86,845	-		HGI48_RS00330	0.83	-0.3
86,845	-		HGI48_RS00330	0.83	-2.2
86,845	-		HGI48_RS00330	0.83	+1.1
86,845	-		HGI48_RS00330	0.83	-1.6
86,926	+		HGI48_RS00330	0.90	-2.2
86,959	+				+0.6
86,960	-				-0.7
86,977	+				+1.7
86,977	+				+1.3
86,978	-				+0.3
86,978	-				-2.2
86,996	-				-2.6
86,996	-				-1.6
86,996	-				+0.1
87,013	+				-2.2
87,013	+				-2.2
87,014	-				+2.2
87,014	-				-0.3
87,014	-				-0.6
87,014	-				+0.7
87,014	-				-1.7
87,014	-				-1.8
87,043	+				-1.6
87,043	+				+3.0
87,043	+				+0.4
87,044	-				+0.4
87,096	+				+0.2
87,096	+				-1.1
87,097	-				-0.5
87,119	-				+1.5
87,124	+				+0.0
87,124	+				+0.5
87,125	-				-2.2
87,127	+				+0.5
87,127	+				+2.0
87,127	+				-1.1
87,127	+				-2.8
87,127	+				+2.2
87,127	+				-0.8
87,127	+				+1.5
87,127	+				+1.4
87,128	-				-0.1
87,128	-				-0.1
87,128	-				+0.7
87,128	-				-1.3
87,128	-				+3.0
87,128	-				-1.9
87,128	-				-1.1
87,128	-				-0.3
87,128	-				-0.5
87,128	-				-0.1
87,128	-				+0.2
87,128	-				+1.2
87,128	-				+0.2
87,128	-				+1.4
87,128	-				-0.8
87,128	-				-0.3
87,128	-				-2.5
87,131	+				+0.5
87,131	+				-1.3
87,131	+				+0.6
87,131	+				+1.2
87,131	+				-1.1
87,132	-				-2.9
87,132	-				+0.1
87,132	-				+1.0
87,132	-				-0.8
87,132	-				-1.3
87,132	-				-1.9
87,265	+		HGI48_RS00335	0.29	-0.6
87,265	+		HGI48_RS00335	0.29	-2.1
87,265	+		HGI48_RS00335	0.29	+0.9
87,266	-		HGI48_RS00335	0.29	-1.8
87,266	-		HGI48_RS00335	0.29	-0.2
87,266	-		HGI48_RS00335	0.29	-1.6
87,266	-		HGI48_RS00335	0.29	-0.8
87,310	+		HGI48_RS00335	0.37	-2.7
87,311	-		HGI48_RS00335	0.37	-0.3
87,311	-		HGI48_RS00335	0.37	+0.9
87,494	+		HGI48_RS00335	0.69	+1.2
87,494	+		HGI48_RS00335	0.69	-0.1
87,494	+		HGI48_RS00335	0.69	-2.1
87,494	+		HGI48_RS00335	0.69	-1.8
87,494	+		HGI48_RS00335	0.69	-0.9
87,494	+		HGI48_RS00335	0.69	-1.9
87,494	+		HGI48_RS00335	0.69	-1.3
87,494	+		HGI48_RS00335	0.69	+1.2
87,494	+		HGI48_RS00335	0.69	+0.6
87,495	-		HGI48_RS00335	0.69	+2.2
87,495	-		HGI48_RS00335	0.69	+0.8
87,495	-		HGI48_RS00335	0.69	+0.7
87,495	-		HGI48_RS00335	0.69	+0.9
87,495	-		HGI48_RS00335	0.69	-1.1
87,531	-		HGI48_RS00335	0.75	+1.4
87,531	-		HGI48_RS00335	0.75	-3.0
87,533	+		HGI48_RS00335	0.75	-1.1
87,533	+		HGI48_RS00335	0.75	-1.1
87,533	+		HGI48_RS00335	0.75	+1.9
87,533	+		HGI48_RS00335	0.75	-2.1
87,533	+		HGI48_RS00335	0.75	-2.1
87,534	-		HGI48_RS00335	0.76	+1.6
87,534	-		HGI48_RS00335	0.76	-1.8
87,538	+		HGI48_RS00335	0.76	-1.9
87,538	+		HGI48_RS00335	0.76	-1.8
87,538	+		HGI48_RS00335	0.76	+0.4
87,538	+		HGI48_RS00335	0.76	-1.8
87,539	-		HGI48_RS00335	0.76	-1.1
87,544	+		HGI48_RS00335	0.77	-1.8
87,544	+		HGI48_RS00335	0.77	+0.1
87,545	-		HGI48_RS00335	0.77	-0.0
87,545	-		HGI48_RS00335	0.77	-1.6
87,618	-				+0.3
87,618	-				-2.8
87,618	-				+0.0
87,618	-				-0.8
87,677	+				+1.8
87,677	+				-1.9
87,677	+				+0.4
87,677	+				+1.8
87,678	-				+0.2
87,678	-				+0.7
87,678	-				-0.1
87,820	+				+0.6
87,820	+				-0.9
87,820	+				-0.8
87,820	+				+1.5
87,820	+				-0.8
87,821	-				+1.6
87,821	-				-1.3
87,821	-				-1.3
87,821	-				+2.5
87,822	+				+0.4
87,822	+				-0.3
87,822	+				+0.2
87,822	+				+1.7
87,822	+				+0.9
87,822	+				+0.8
87,822	+				-2.5
87,822	+				+0.1
87,822	+				+0.5
87,822	+				+1.2
87,822	+				-0.8
87,822	+				+1.7
87,822	+				-0.7
87,822	+				+0.1
87,822	+				+1.0
87,822	+				+1.8
87,822	+				-3.0
87,822	+				-0.3
87,822	+				+1.8
87,823	-				-0.2
87,823	-				-1.3
87,823	-				-0.4
87,823	-				+1.5
87,842	+				+0.5
87,843	-				-0.8
87,843	-				-1.4
87,849	+				+2.1
87,849	+				+0.8
87,849	+				+0.2
87,849	+				-2.9
87,850	-				+1.5
87,850	-				+0.2
87,850	-				-0.3
87,850	-				+1.4
87,850	-				-1.8
87,851	+				+0.2
87,851	+				+2.2
87,851	+				-0.1
87,851	+				+0.2
87,851	+				-2.8
87,851	+				+0.3
87,851	+				-0.5
87,852	-				-1.3
87,852	-				-2.3
87,852	-				+0.4
88,110	+				-0.8
88,111	-				-1.9
88,175	+				-0.8
88,175	+				+0.5
88,176	-				+2.6
88,214	+				-1.3
88,214	+				-1.9
88,215	-				-2.1
88,215	-				-2.5
88,218	+				-0.5
88,218	+				-0.8
88,218	+				+1.2
88,218	+				-1.3
88,218	+				+0.4
88,218	+				-2.2
88,218	+				-1.3
88,219	-				+0.0
88,219	-				-1.1
88,219	-				-1.3
88,219	-				-1.6
88,219	-				-1.6
88,219	-				-1.3
88,272	+				-1.0
88,347	+		HGI48_RS00345	0.14	+1.0
88,450	+		HGI48_RS00345	0.25	+2.0
88,450	+		HGI48_RS00345	0.25	-1.3
88,450	+		HGI48_RS00345	0.25	-1.1
88,450	+		HGI48_RS00345	0.25	+0.7
88,450	+		HGI48_RS00345	0.25	-2.3
88,450	+		HGI48_RS00345	0.25	-2.1
88,451	-		HGI48_RS00345	0.25	+0.9
88,451	-		HGI48_RS00345	0.25	-1.9
88,467	+		HGI48_RS00345	0.26	-0.8
88,587	+		HGI48_RS00345	0.39	-1.9
88,587	+		HGI48_RS00345	0.39	+0.4
88,587	+		HGI48_RS00345	0.39	-2.2
88,588	-		HGI48_RS00345	0.39	-1.3