Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS21005

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,687,665	+		HGI48_RS21000	0.19	+1.5
4,687,674	+		HGI48_RS21000	0.20	-1.6
4,687,675	-		HGI48_RS21000	0.20	-1.4
4,687,675	-		HGI48_RS21000	0.20	-1.6
4,687,675	-		HGI48_RS21000	0.20	-0.1
4,687,675	-		HGI48_RS21000	0.20	-1.4
4,687,675	-		HGI48_RS21000	0.20	-2.0
4,687,687	-		HGI48_RS21000	0.21	-0.2
4,687,687	-		HGI48_RS21000	0.21	+1.2
4,687,687	-				-0.4
4,687,703	+		HGI48_RS21000	0.23	-0.6
4,687,703	+		HGI48_RS21000	0.23	-3.0
4,687,704	-		HGI48_RS21000	0.23	+1.2
4,687,704	-		HGI48_RS21000	0.23	-0.2
4,687,737	+				-0.4
4,687,737	+		HGI48_RS21000	0.26	-0.8
4,687,737	+		HGI48_RS21000	0.26	-0.2
4,687,737	+				+0.2
4,687,737	+		HGI48_RS21000	0.26	-1.4
4,687,737	+		HGI48_RS21000	0.26	+1.5
4,687,737	+		HGI48_RS21000	0.26	+0.0
4,687,737	+		HGI48_RS21000	0.26	+1.0
4,687,737	+		HGI48_RS21000	0.26	-1.6
4,687,737	+		HGI48_RS21000	0.26	-1.1
4,687,738	-		HGI48_RS21000	0.26	+0.7
4,687,738	-		HGI48_RS21000	0.26	-0.3
4,687,738	-		HGI48_RS21000	0.26	-2.0
4,687,738	-		HGI48_RS21000	0.26	-2.2
4,687,738	-		HGI48_RS21000	0.26	-0.8
4,687,738	-		HGI48_RS21000	0.26	+1.0
4,687,881	+		HGI48_RS21000	0.38	+1.7
4,687,881	+		HGI48_RS21000	0.38	+1.2
4,687,914	+		HGI48_RS21000	0.41	-0.5
4,687,914	+		HGI48_RS21000	0.41	+0.9
4,687,914	+		HGI48_RS21000	0.41	-0.8
4,687,915	-		HGI48_RS21000	0.41	+0.6
4,687,915	-		HGI48_RS21000	0.41	+0.6
4,687,915	-		HGI48_RS21000	0.41	-0.4
4,687,915	-		HGI48_RS21000	0.41	-1.6
4,687,915	-		HGI48_RS21000	0.41	-0.4
4,687,996	-				-0.4
4,688,031	+				+3.2
4,688,032	-		HGI48_RS21000	0.50	+0.6
4,688,032	-		HGI48_RS21000	0.50	-1.4
4,688,032	-		HGI48_RS21000	0.50	+0.4
4,688,180	+		HGI48_RS21000	0.63	+0.7
4,688,180	+		HGI48_RS21000	0.63	-1.1
4,688,181	-		HGI48_RS21000	0.63	+2.0
4,688,192	+		HGI48_RS21000	0.64	-1.4
4,688,193	-		HGI48_RS21000	0.64	+1.1
4,688,399	+		HGI48_RS21000	0.81	-0.8
4,688,634	-				+2.0
4,688,634	-				-0.4
4,688,634	-				+1.0
4,688,634	-				-1.5
4,688,635	+				-1.4
4,688,635	+				+1.8
4,688,635	+				+0.5
4,688,635	+				+0.8
4,688,635	+				-0.4
4,688,635	+				-2.2
4,688,635	+				-0.0
4,688,635	+				-0.6
4,688,635	+				+1.5
4,688,636	-				-0.1
4,688,636	-				-1.6
4,688,636	-				-2.0
4,688,636	-				+2.0
4,688,636	-				-1.6
4,688,692	+				+0.2
4,688,692	+				-1.8
4,688,692	+				-1.4
4,688,692	+				+0.6
4,688,692	+				+0.4
4,688,693	-				+0.6
4,688,693	-				+0.6
4,688,693	-				+0.6
4,688,693	-				+1.2
4,688,693	-				+0.8
4,688,693	-				-2.7
4,688,698	-				-2.2
4,688,698	-				-0.0
4,688,698	-				-0.4
4,688,750	+		HGI48_RS21005	0.11	-0.8
4,688,750	+		HGI48_RS21005	0.11	-1.6
4,688,944	+		HGI48_RS21005	0.35	+1.0
4,688,944	+		HGI48_RS21005	0.35	+1.9
4,688,944	+		HGI48_RS21005	0.35	-1.3
4,688,944	+		HGI48_RS21005	0.35	-0.8
4,688,945	-		HGI48_RS21005	0.35	+0.9
4,688,945	-		HGI48_RS21005	0.35	-0.9
4,688,945	-				-0.4
4,688,945	-		HGI48_RS21005	0.35	+0.2
4,688,945	-		HGI48_RS21005	0.35	-1.2
4,688,945	-		HGI48_RS21005	0.35	-1.0
4,689,062	-		HGI48_RS21005	0.49	+0.1
4,689,062	-		HGI48_RS21005	0.49	+3.2
4,689,101	+		HGI48_RS21005	0.54	-0.4
4,689,101	+		HGI48_RS21005	0.54	-0.4
4,689,101	+		HGI48_RS21005	0.54	+5.6
4,689,101	+		HGI48_RS21005	0.54	+1.4
4,689,101	+				-0.4
4,689,102	-		HGI48_RS21005	0.54	+1.9
4,689,102	-		HGI48_RS21005	0.54	+1.0
4,689,102	-		HGI48_RS21005	0.54	+0.4
4,689,102	-		HGI48_RS21005	0.54	-1.8
4,689,104	-		HGI48_RS21005	0.54	+1.4
4,689,136	+		HGI48_RS21005	0.58	-0.8
4,689,137	-		HGI48_RS21005	0.58	+0.7
4,689,199	+		HGI48_RS21005	0.66	-0.4
4,689,199	+		HGI48_RS21005	0.66	-0.4
4,689,199	+				+1.8
4,689,200	-		HGI48_RS21005	0.66	+1.2
4,689,200	-		HGI48_RS21005	0.66	+2.1
4,689,200	-				+1.8
4,689,200	-		HGI48_RS21005	0.66	-2.0
4,689,218	+		HGI48_RS21005	0.68	-2.5
4,689,219	-		HGI48_RS21005	0.68	-1.8
4,689,219	-		HGI48_RS21005	0.68	-1.8
4,689,219	-		HGI48_RS21005	0.68	+0.6
4,689,270	-		HGI48_RS21005	0.75	+0.5
4,689,364	+		HGI48_RS21005	0.86	-0.5
4,689,364	+				-0.4
4,689,364	+		HGI48_RS21005	0.86	+0.8
4,689,365	-		HGI48_RS21005	0.86	-1.0
4,689,365	-		HGI48_RS21005	0.86	-0.0
4,689,365	-		HGI48_RS21005	0.86	-0.6
4,689,450	-				-1.4
4,689,498	+				-1.1
4,689,498	+				-0.6
4,689,498	+				+1.2
4,689,498	+				+1.5
4,689,498	+				+1.0
4,689,498	+				-0.4
4,689,498	+				+0.4
4,689,498	+				-0.4
4,689,498	+				-0.6
4,689,498	+				+1.2
4,689,498	+				-1.7
4,689,499	-				-2.4
4,689,499	-				-0.4
4,689,499	-				-0.6
4,689,499	-				-1.1
4,689,499	-				-1.3
4,689,502	+				+0.4
4,689,502	+				+0.2
4,689,567	+				+0.9
4,689,568	-				-1.6
4,689,568	-				-1.8
4,689,568	-				-0.4
4,689,638	-				+0.8
4,689,665	-				-2.5
4,689,725	+				-1.4
4,689,726	-				+2.4
4,689,726	-				-2.6
4,689,735	+				+0.8
4,689,736	-				-0.9
4,689,736	-				-1.8
4,689,781	-				+0.4
4,689,781	-				-1.4
4,689,803	+				-1.4
4,689,803	+				-1.4
4,689,804	-				-2.0
4,689,814	+				-0.4
4,689,815	-				+0.4
4,689,815	-				+0.2
4,689,815	-				-1.0
4,689,909	+				+0.2
4,689,909	+		HGI48_RS21010	0.30	-0.7
4,689,909	+		HGI48_RS21010	0.30	+1.0
4,689,909	+		HGI48_RS21010	0.30	-1.1
4,689,909	+		HGI48_RS21010	0.30	-1.6
4,689,909	+		HGI48_RS21010	0.30	-2.1
4,689,909	+		HGI48_RS21010	0.30	+0.8
4,689,910	-		HGI48_RS21010	0.30	+0.5
4,689,910	-		HGI48_RS21010	0.30	-1.1
4,689,910	-		HGI48_RS21010	0.30	-0.8
4,689,910	-		HGI48_RS21010	0.30	+0.9
4,689,910	-		HGI48_RS21010	0.30	+0.0
4,689,910	-		HGI48_RS21010	0.30	-1.8
4,689,910	-		HGI48_RS21010	0.30	-0.6
4,689,910	-				+5.0
4,689,910	-		HGI48_RS21010	0.30	+1.2
4,689,910	-		HGI48_RS21010	0.30	+0.8
4,689,910	-		HGI48_RS21010	0.30	+3.4
4,689,910	-		HGI48_RS21010	0.30	-1.4
4,689,910	-		HGI48_RS21010	0.30	-2.5
4,689,910	-		HGI48_RS21010	0.30	-2.6
4,689,910	-				-0.4
4,689,910	-		HGI48_RS21010	0.30	-1.4
4,689,973	+		HGI48_RS21010	0.45	+0.4
4,689,974	-		HGI48_RS21010	0.45	-1.6
4,690,074	+		HGI48_RS21010	0.68	-1.6
4,690,074	+		HGI48_RS21010	0.68	+0.0
4,690,075	-		HGI48_RS21010	0.68	+0.6
4,690,086	+		HGI48_RS21010	0.71	-0.5
4,690,086	+		HGI48_RS21010	0.71	-1.1
4,690,086	+		HGI48_RS21010	0.71	+0.9
4,690,086	+		HGI48_RS21010	0.71	-3.0
4,690,086	+				-0.4
4,690,087	-		HGI48_RS21010	0.71	-1.1
4,690,087	-				+1.2
4,690,125	+		HGI48_RS21010	0.80	-0.1
4,690,125	+		HGI48_RS21010	0.80	-3.5
4,690,165	+		HGI48_RS21010	0.89	-1.1
4,690,166	-		HGI48_RS21010	0.89	-2.1
4,690,166	-		HGI48_RS21010	0.89	-1.8
4,690,166	-		HGI48_RS21010	0.89	-1.1
4,690,166	-		HGI48_RS21010	0.89	+1.2
4,690,166	-		HGI48_RS21010	0.89	-0.8
4,690,166	-		HGI48_RS21010	0.89	-0.4
4,690,166	-		HGI48_RS21010	0.89	-0.7
4,690,206	+				-1.8
4,690,216	+				-0.4
4,690,217	-				+1.6
4,690,217	-				+0.6
4,690,236	+				-0.1
4,690,236	+				-1.4
4,690,236	+				-1.6
4,690,237	-				-0.0
4,690,237	-				+2.0
4,690,237	-				-3.0
4,690,243	+				+0.5
4,690,243	+				-3.5
4,690,244	-				+1.3
4,690,244	-				+0.5
4,690,255	+				-2.0
4,690,255	+				-1.1
4,690,256	-				-0.7
4,690,256	-				+2.4
4,690,297	-				-1.1
4,690,297	-				-1.6
4,690,297	-				-1.8
4,690,297	-				+1.6
4,690,318	+				-1.1
4,690,319	-				-1.8
4,690,344	+				-0.4
4,690,344	+				+1.4
4,690,344	+				-0.8
4,690,345	-				+1.2
4,690,414	+				+1.5
4,690,414	+				-1.6
4,690,415	-				+0.5
4,690,415	-				-0.8
4,690,415	-				-1.6
4,690,418	+				-0.0
4,690,418	+				-2.1
4,690,418	+				-1.3
4,690,418	+				-2.1
4,690,418	+				+1.0
4,690,418	+				+3.1
4,690,418	+				-1.1
4,690,418	+				+0.6
4,690,418	+				+0.6
4,690,418	+				+0.3
4,690,419	-				-1.1
4,690,419	-				-2.5
4,690,419	-				+0.0
4,690,419	-				-0.4
4,690,419	-				-1.1
4,690,420	+				+0.3
4,690,440	+				+0.8
4,690,440	+				-2.9
4,690,441	-				-0.5
4,690,449	+				-2.2
4,690,449	+				-2.1
4,690,450	-				+0.8
4,690,450	-				+2.8
4,690,450	-				-1.4
4,690,450	-				-1.8
4,690,454	-				-1.0
4,690,454	-				-1.1
4,690,454	-				-1.0
4,690,454	-				-2.6
4,690,454	-				-1.4
4,690,454	-				-0.4
4,690,475	+				-1.1