Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS20180

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,505,413	-		HGI48_RS20175	0.19	+2.1
4,505,451	+		HGI48_RS20175	0.23	+0.4
4,505,451	+		HGI48_RS20175	0.23	+2.1
4,505,452	-		HGI48_RS20175	0.23	-0.1
4,505,452	-		HGI48_RS20175	0.23	-0.7
4,505,452	-		HGI48_RS20175	0.23	+1.5
4,505,516	+		HGI48_RS20175	0.29	+1.3
4,505,516	+		HGI48_RS20175	0.29	-0.1
4,505,516	+		HGI48_RS20175	0.29	+0.4
4,505,517	-				+0.7
4,505,517	-		HGI48_RS20175	0.29	-1.3
4,505,603	+		HGI48_RS20175	0.37	-1.1
4,505,603	+				-0.3
4,505,603	+		HGI48_RS20175	0.37	-2.2
4,505,603	+		HGI48_RS20175	0.37	-1.6
4,505,603	+		HGI48_RS20175	0.37	-0.3
4,505,603	+				-0.3
4,505,603	+		HGI48_RS20175	0.37	-2.2
4,505,757	+		HGI48_RS20175	0.51	-1.1
4,505,758	-		HGI48_RS20175	0.51	+0.6
4,505,758	-		HGI48_RS20175	0.51	-2.3
4,505,798	+		HGI48_RS20175	0.55	-1.1
4,505,798	+		HGI48_RS20175	0.55	-0.7
4,505,798	+		HGI48_RS20175	0.55	-1.6
4,505,841	-		HGI48_RS20175	0.59	+0.6
4,505,906	+		HGI48_RS20175	0.65	-2.2
4,505,942	+		HGI48_RS20175	0.68	+0.9
4,505,942	+		HGI48_RS20175	0.68	-1.1
4,505,969	+		HGI48_RS20175	0.71	-1.6
4,505,970	-		HGI48_RS20175	0.71	+1.6
4,506,119	-		HGI48_RS20175	0.84	-0.7
4,506,276	+				-1.3
4,506,276	+				-0.4
4,506,276	+				+0.3
4,506,276	+				-1.1
4,506,276	+				-1.1
4,506,276	+				-1.7
4,506,276	+				-0.1
4,506,276	+				+1.3
4,506,276	+				-0.3
4,506,276	+				+1.1
4,506,276	+				+0.6
4,506,276	+				+0.3
4,506,276	+				+1.3
4,506,276	+				+2.3
4,506,276	+				-1.6
4,506,276	+				-1.9
4,506,276	+				+0.3
4,506,277	-				+1.1
4,506,277	-				-3.3
4,506,277	-				-0.7
4,506,277	-				-0.2
4,506,277	-				-0.3
4,506,277	-				-1.1
4,506,277	-				-0.3
4,506,277	-				+0.7
4,506,277	-				+0.4
4,506,277	-				-1.1
4,506,277	-				+0.3
4,506,277	-				+2.3
4,506,277	-				+1.4
4,506,277	-				+2.3
4,506,277	-				-1.9
4,506,277	-				+1.0
4,506,334	+				-1.6
4,506,343	+				-1.1
4,506,343	+				+0.3
4,506,343	+				-0.2
4,506,344	-				-0.9
4,506,344	-				-0.6
4,506,355	+				-0.7
4,506,356	-				-0.7
4,506,356	-				-1.9
4,506,448	+		HGI48_RS20180	0.13	+0.4
4,506,448	+		HGI48_RS20180	0.13	+0.6
4,506,448	+		HGI48_RS20180	0.13	+2.9
4,506,448	+		HGI48_RS20180	0.13	-1.9
4,506,449	-		HGI48_RS20180	0.13	-1.1
4,506,449	-		HGI48_RS20180	0.13	-1.7
4,506,511	-		HGI48_RS20180	0.18	-2.2
4,506,712	+				+1.7
4,506,712	+		HGI48_RS20180	0.34	+1.3
4,506,713	-				+1.3
4,506,713	-		HGI48_RS20180	0.34	+0.7
4,506,713	-		HGI48_RS20180	0.34	-0.7
4,506,713	-				+0.3
4,506,799	+		HGI48_RS20180	0.41	+0.7
4,506,799	+		HGI48_RS20180	0.41	-2.6
4,506,799	+		HGI48_RS20180	0.41	-1.3
4,506,799	+		HGI48_RS20180	0.41	-0.2
4,506,799	+				-0.3
4,506,799	+		HGI48_RS20180	0.41	+0.7
4,506,799	+		HGI48_RS20180	0.41	-2.1
4,506,800	-		HGI48_RS20180	0.41	-0.3
4,506,800	-		HGI48_RS20180	0.41	-0.2
4,506,800	-		HGI48_RS20180	0.41	-2.3
4,506,800	-		HGI48_RS20180	0.41	-2.1
4,506,832	+		HGI48_RS20180	0.44	+1.2
4,506,833	-		HGI48_RS20180	0.44	-1.0
4,507,021	+		HGI48_RS20180	0.59	+0.3
4,507,021	+		HGI48_RS20180	0.59	-0.7
4,507,022	-		HGI48_RS20180	0.59	-0.9
4,507,408	+		HGI48_RS20180	0.90	-1.1
4,507,596	+				-0.9
4,507,596	+				-1.1
4,507,596	+				-2.1
4,507,596	+				-1.1
4,507,596	+				-2.7
4,507,596	+				+0.8
4,507,597	-				-1.3
4,507,597	-				-1.6
4,507,597	-				-1.4
4,507,597	-				+1.3
4,507,704	+				+2.3
4,507,738	+		HGI48_RS20185	0.18	-1.7
4,507,739	-		HGI48_RS20185	0.18	+0.9
4,507,739	-		HGI48_RS20185	0.18	+0.8
4,507,748	-		HGI48_RS20185	0.19	-2.4
4,507,821	-		HGI48_RS20185	0.25	-0.7
4,507,875	+		HGI48_RS20185	0.30	+0.3
4,507,875	+		HGI48_RS20185	0.30	+0.3
4,507,876	-		HGI48_RS20185	0.30	-1.1
4,507,887	-		HGI48_RS20185	0.31	+2.1
4,507,941	+		HGI48_RS20185	0.36	+2.1
4,507,941	+		HGI48_RS20185	0.36	-1.7
4,507,941	+		HGI48_RS20185	0.36	-0.0
4,507,942	-		HGI48_RS20185	0.36	+2.3
4,507,995	+		HGI48_RS20185	0.41	-1.3
4,507,995	+		HGI48_RS20185	0.41	+2.7
4,507,995	+		HGI48_RS20185	0.41	-0.2
4,507,996	-		HGI48_RS20185	0.41	-0.2
4,507,996	-		HGI48_RS20185	0.41	+0.1
4,507,996	-		HGI48_RS20185	0.41	-0.1
4,507,996	-		HGI48_RS20185	0.41	+0.8
4,507,996	-		HGI48_RS20185	0.41	+1.8
4,507,996	-		HGI48_RS20185	0.41	+1.0
4,507,996	-		HGI48_RS20185	0.41	-0.6
4,507,996	-				+0.3
4,507,996	-		HGI48_RS20185	0.41	+1.4
4,507,996	-		HGI48_RS20185	0.41	+2.7
4,507,999	+		HGI48_RS20185	0.41	+1.6
4,508,092	+		HGI48_RS20185	0.49	+1.0
4,508,317	+		HGI48_RS20185	0.69	-1.1
4,508,317	+		HGI48_RS20185	0.69	-0.6
4,508,317	+		HGI48_RS20185	0.69	-0.7
4,508,317	+		HGI48_RS20185	0.69	-0.4
4,508,317	+		HGI48_RS20185	0.69	-0.8
4,508,318	-		HGI48_RS20185	0.69	+1.8
4,508,430	+		HGI48_RS20185	0.79	+1.5
4,508,430	+		HGI48_RS20185	0.79	-0.4
4,508,430	+		HGI48_RS20185	0.79	+1.5
4,508,430	+		HGI48_RS20185	0.79	+1.0
4,508,431	-		HGI48_RS20185	0.79	-2.1
4,508,519	+		HGI48_RS20185	0.87	+0.9
4,508,519	+				+1.3
4,508,520	-		HGI48_RS20185	0.87	+0.8
4,508,520	-				+1.3
4,508,520	-		HGI48_RS20185	0.87	+0.3
4,508,520	-				+2.0
4,508,520	-		HGI48_RS20185	0.87	+1.7