Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS19790

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,419,668	-		HGI48_RS19780	0.69	+2.4
4,419,668	-		HGI48_RS19780	0.69	+0.3
4,419,775	-		HGI48_RS19780	0.84	+0.6
4,419,834	+				+2.0
4,419,834	+				-1.8
4,419,834	+				+2.1
4,419,834	+				-2.3
4,419,874	-				+2.0
4,419,908	+				-1.8
4,419,908	+				+1.8
4,419,908	+				-2.7
4,419,909	-				-2.8
4,419,911	+				-1.8
4,419,911	+				+1.2
4,419,911	+				+1.7
4,419,911	+				-0.8
4,419,912	-				-1.6
4,419,913	+				+2.4
4,419,934	+				-1.9
4,420,075	+		HGI48_RS19785	0.22	+0.1
4,420,138	+		HGI48_RS19785	0.33	-1.1
4,420,202	+		HGI48_RS19785	0.44	-1.3
4,420,203	-		HGI48_RS19785	0.44	+0.4
4,420,286	-				-0.3
4,420,372	-		HGI48_RS19785	0.73	-1.9
4,420,516	+				+0.2
4,420,516	+				+1.4
4,420,516	+				-1.3
4,420,516	+				-1.1
4,420,519	+				+1.3
4,420,519	+				-0.0
4,420,525	+				+1.1
4,420,525	+				+0.3
4,420,526	-				-0.6
4,420,526	-				+1.5
4,420,560	+				+0.4
4,420,561	-				-0.8
4,420,678	+				+0.8
4,420,678	+				+1.7
4,420,678	+				-2.6
4,420,678	+				+1.2
4,420,679	-				-0.2
4,420,679	-				+0.7
4,420,679	-				-0.8
4,420,714	+				-2.8
4,420,714	+				-0.1
4,420,714	+				-2.5
4,420,715	-				+0.5
4,420,715	-				+0.4
4,420,835	+				-0.8
4,420,835	+				+1.0
4,420,835	+				-2.3
4,420,835	+				-0.8
4,420,953	+		HGI48_RS19790	0.14	+1.1
4,420,953	+		HGI48_RS19790	0.14	+1.2
4,420,954	-		HGI48_RS19790	0.14	-0.5
4,420,961	+		HGI48_RS19790	0.14	+0.5
4,420,962	-		HGI48_RS19790	0.15	-1.6
4,420,962	-		HGI48_RS19790	0.15	-0.8
4,420,973	-		HGI48_RS19790	0.15	-0.1
4,421,115	+		HGI48_RS19790	0.22	-0.3
4,421,267	+		HGI48_RS19790	0.29	-1.9
4,421,267	+				+1.2
4,421,267	+		HGI48_RS19790	0.29	-1.9
4,421,272	+		HGI48_RS19790	0.29	-1.6
4,421,280	+		HGI48_RS19790	0.29	-1.3
4,421,415	+		HGI48_RS19790	0.35	-0.2
4,421,415	+		HGI48_RS19790	0.35	+1.2
4,421,415	+		HGI48_RS19790	0.35	-2.1
4,421,416	-		HGI48_RS19790	0.35	+1.6
4,421,416	-		HGI48_RS19790	0.35	-1.6
4,421,416	-		HGI48_RS19790	0.35	+1.5
4,421,509	+		HGI48_RS19790	0.40	+0.4
4,421,509	+		HGI48_RS19790	0.40	+1.4
4,421,510	-		HGI48_RS19790	0.40	-1.1
4,421,793	+		HGI48_RS19790	0.53	+1.1
4,421,793	+		HGI48_RS19790	0.53	-2.6
4,421,794	-		HGI48_RS19790	0.53	-0.8
4,421,794	-		HGI48_RS19790	0.53	+1.9
4,421,859	+		HGI48_RS19790	0.56	-0.6
4,421,860	-				+1.2
4,421,931	+		HGI48_RS19790	0.59	-1.1
4,421,932	-		HGI48_RS19790	0.59	-1.1
4,421,932	-				+0.7
4,421,932	-		HGI48_RS19790	0.59	-1.9
4,422,019	+		HGI48_RS19790	0.63	+0.1
4,422,020	-		HGI48_RS19790	0.63	-0.9
4,422,075	+		HGI48_RS19790	0.66	-1.3
4,422,075	+		HGI48_RS19790	0.66	-1.3
4,422,075	+		HGI48_RS19790	0.66	-2.3
4,422,076	-		HGI48_RS19790	0.66	+0.2
4,422,192	+		HGI48_RS19790	0.71	-2.3
4,422,193	-		HGI48_RS19790	0.71	-1.3
4,422,193	-		HGI48_RS19790	0.71	-1.1
4,422,229	-		HGI48_RS19790	0.73	+0.5
4,422,229	-				+2.8
4,422,279	-		HGI48_RS19790	0.75	-0.8
4,422,378	+		HGI48_RS19790	0.80	+1.3
4,422,378	+		HGI48_RS19790	0.80	-0.7
4,422,378	+				+3.6
4,422,378	+		HGI48_RS19790	0.80	+0.8
4,422,378	+		HGI48_RS19790	0.80	+2.4
4,422,378	+		HGI48_RS19790	0.80	-0.6
4,422,378	+		HGI48_RS19790	0.80	+1.4
4,422,378	+		HGI48_RS19790	0.80	+0.8
4,422,378	+		HGI48_RS19790	0.80	+0.7
4,422,378	+		HGI48_RS19790	0.80	+0.9
4,422,378	+		HGI48_RS19790	0.80	+2.1
4,422,379	-		HGI48_RS19790	0.80	+0.7
4,422,379	-		HGI48_RS19790	0.80	+1.2
4,422,379	-				+2.6
4,422,379	-		HGI48_RS19790	0.80	+0.2
4,422,379	-		HGI48_RS19790	0.80	+2.8
4,422,379	-		HGI48_RS19790	0.80	+0.4
4,422,436	-		HGI48_RS19790	0.82	-2.3
4,422,468	-		HGI48_RS19790	0.84	+0.1
4,422,586	-				+3.8
4,422,586	-				+3.8
4,422,604	-				-0.8
4,422,631	+				+2.1
4,422,632	-				-1.1
4,422,632	-				-0.6
4,422,632	-				+1.0
4,422,632	-				-0.3
4,422,754	-				-0.0
4,422,763	+				-0.3
4,422,764	-				+1.1
4,422,765	+				-0.2
4,422,765	+				-0.5
4,422,765	+				+1.5
4,422,765	+				-1.1
4,422,765	+				+0.7
4,422,765	+				+1.9
4,422,765	+				-2.3
4,422,765	+				+1.0
4,422,766	-				+1.2
4,422,766	-				+1.1
4,422,766	-				-1.1
4,422,766	-				+1.3
4,422,766	-				+1.4
4,422,770	-				+1.8
4,422,770	-				-1.8
4,422,834	+				+1.2
4,422,951	+				+0.3
4,422,951	+				-1.6
4,422,951	+				+1.1
4,422,952	-				-0.5
4,423,011	+				-1.8
4,423,011	+				-0.6
4,423,011	+				-0.8
4,423,063	+				-3.2
4,423,063	+				+1.0
4,423,112	+		HGI48_RS19795	0.12	+1.7
4,423,113	-		HGI48_RS19795	0.12	-1.3
4,423,135	-		HGI48_RS19795	0.12	+1.0
4,423,135	-		HGI48_RS19795	0.12	+1.5
4,423,147	+		HGI48_RS19795	0.13	-0.9
4,423,148	-		HGI48_RS19795	0.13	+1.1
4,423,148	-		HGI48_RS19795	0.13	+0.7
4,423,148	-				-0.3
4,423,358	-		HGI48_RS19795	0.22	-1.9
4,423,358	-				+1.2
4,423,464	+		HGI48_RS19795	0.26	-1.8
4,423,465	-				-0.3
4,423,465	-		HGI48_RS19795	0.26	+3.2
4,423,465	-		HGI48_RS19795	0.26	+1.2
4,423,468	+		HGI48_RS19795	0.26	-1.6
4,423,468	+		HGI48_RS19795	0.26	+0.4
4,423,469	-				+3.2
4,423,472	-		HGI48_RS19795	0.26	+0.9
4,423,484	+		HGI48_RS19795	0.27	+1.4
4,423,484	+		HGI48_RS19795	0.27	+1.0
4,423,484	+		HGI48_RS19795	0.27	+1.7
4,423,485	-		HGI48_RS19795	0.27	-1.6
4,423,485	-				+0.2
4,423,485	-		HGI48_RS19795	0.27	+1.1
4,423,488	+		HGI48_RS19795	0.27	+1.4
4,423,565	-				+0.7
4,423,566	+		HGI48_RS19795	0.30	+1.0
4,423,567	-		HGI48_RS19795	0.30	+0.2
4,423,567	-		HGI48_RS19795	0.30	-0.8
4,423,567	-		HGI48_RS19795	0.30	+0.1
4,423,567	-		HGI48_RS19795	0.30	-1.1
4,423,608	+		HGI48_RS19795	0.32	-1.6
4,423,608	+		HGI48_RS19795	0.32	+2.2
4,423,609	-		HGI48_RS19795	0.32	+0.4