Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS19230

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS19225 and HGI48_RS19230 are separated by 50 nucleotidesHGI48_RS19230 and HGI48_RS19235 are separated by 102 nucleotidesHGI48_RS19235 and HGI48_RS19240 are separated by 60 nucleotides HGI48_RS19225: HGI48_RS19225 - 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB, at 4,317,149 to 4,318,444 _RS19225 HGI48_RS19230: HGI48_RS19230 - Trk system potassium transporter TrkA, at 4,318,495 to 4,319,871 _RS19230 HGI48_RS19235: HGI48_RS19235 - large-conductance mechanosensitive channel protein MscL, at 4,319,974 to 4,320,399 _RS19235 HGI48_RS19240: HGI48_RS19240 - IS481 family transposase, at 4,320,460 to 4,321,501 _RS19240 Position (kb) 4318 4319 4320Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4317.510 kb on + strand, within HGI48_RS19225at 4317.511 kb on - strand, within HGI48_RS19225at 4317.697 kb on + strand, within HGI48_RS19225at 4317.710 kb on + strand, within HGI48_RS19225at 4317.711 kb on - strand, within HGI48_RS19225at 4317.739 kb on - strand, within HGI48_RS19225at 4317.739 kb on - strand, within HGI48_RS19225at 4317.739 kb on - strand, within HGI48_RS19225at 4317.739 kb on - strand, within HGI48_RS19225at 4317.741 kb on + strand, within HGI48_RS19225at 4317.741 kb on + strand, within HGI48_RS19225at 4317.741 kb on + strand, within HGI48_RS19225at 4317.741 kb on + strand, within HGI48_RS19225at 4317.741 kb on + strand, within HGI48_RS19225at 4317.741 kb on + strand, within HGI48_RS19225at 4317.741 kb on + strand, within HGI48_RS19225at 4317.741 kb on + strand, within HGI48_RS19225at 4317.741 kb on + strandat 4317.741 kb on + strand, within HGI48_RS19225at 4317.742 kb on - strand, within HGI48_RS19225at 4317.742 kb on - strand, within HGI48_RS19225at 4317.742 kb on - strand, within HGI48_RS19225at 4317.742 kb on - strand, within HGI48_RS19225at 4317.742 kb on - strand, within HGI48_RS19225at 4317.742 kb on - strand, within HGI48_RS19225at 4317.742 kb on - strand, within HGI48_RS19225at 4317.742 kb on - strand, within HGI48_RS19225at 4317.742 kb on - strand, within HGI48_RS19225at 4317.742 kb on - strand, within HGI48_RS19225at 4317.742 kb on - strand, within HGI48_RS19225at 4317.742 kb on - strand, within HGI48_RS19225at 4317.742 kb on - strand, within HGI48_RS19225at 4317.742 kb on - strand, within HGI48_RS19225at 4317.742 kb on - strand, within HGI48_RS19225at 4317.742 kb on - strand, within HGI48_RS19225at 4317.746 kb on + strand, within HGI48_RS19225at 4317.838 kb on - strand, within HGI48_RS19225at 4317.906 kb on + strand, within HGI48_RS19225at 4317.939 kb on + strand, within HGI48_RS19225at 4317.939 kb on + strand, within HGI48_RS19225at 4317.939 kb on + strand, within HGI48_RS19225at 4317.939 kb on + strand, within HGI48_RS19225at 4317.939 kb on + strand, within HGI48_RS19225at 4317.939 kb on + strand, within HGI48_RS19225at 4317.939 kb on + strand, within HGI48_RS19225at 4317.940 kb on - strand, within HGI48_RS19225at 4317.940 kb on - strand, within HGI48_RS19225at 4317.940 kb on - strand, within HGI48_RS19225at 4317.966 kb on + strandat 4317.966 kb on + strand, within HGI48_RS19225at 4317.966 kb on + strand, within HGI48_RS19225at 4317.966 kb on + strand, within HGI48_RS19225at 4317.967 kb on - strand, within HGI48_RS19225at 4317.967 kb on - strandat 4317.967 kb on - strand, within HGI48_RS19225at 4317.981 kb on + strand, within HGI48_RS19225at 4317.982 kb on - strandat 4317.982 kb on - strand, within HGI48_RS19225at 4317.982 kb on - strand, within HGI48_RS19225at 4317.982 kb on - strand, within HGI48_RS19225at 4318.159 kb on + strand, within HGI48_RS19225at 4318.159 kb on + strand, within HGI48_RS19225at 4318.159 kb on + strand, within HGI48_RS19225at 4318.159 kb on + strand, within HGI48_RS19225at 4318.159 kb on + strand, within HGI48_RS19225at 4318.160 kb on - strand, within HGI48_RS19225at 4318.160 kb on - strand, within HGI48_RS19225at 4318.160 kb on - strand, within HGI48_RS19225at 4318.160 kb on - strand, within HGI48_RS19225at 4318.160 kb on - strand, within HGI48_RS19225at 4318.160 kb on - strand, within HGI48_RS19225at 4318.225 kb on + strandat 4318.225 kb on + strand, within HGI48_RS19225at 4318.241 kb on - strand, within HGI48_RS19225at 4318.261 kb on - strand, within HGI48_RS19225at 4318.261 kb on - strand, within HGI48_RS19225at 4318.261 kb on - strand, within HGI48_RS19225at 4318.261 kb on - strand, within HGI48_RS19225at 4318.262 kb on + strand, within HGI48_RS19225at 4318.262 kb on + strand, within HGI48_RS19225at 4318.262 kb on + strand, within HGI48_RS19225at 4318.263 kb on - strand, within HGI48_RS19225at 4318.263 kb on - strand, within HGI48_RS19225at 4318.263 kb on - strand, within HGI48_RS19225at 4318.263 kb on - strand, within HGI48_RS19225at 4318.263 kb on - strand, within HGI48_RS19225at 4318.263 kb on - strand, within HGI48_RS19225at 4318.277 kb on - strandat 4318.277 kb on - strand, within HGI48_RS19225at 4318.277 kb on - strand, within HGI48_RS19225at 4318.278 kb on + strand, within HGI48_RS19225at 4318.279 kb on - strandat 4318.279 kb on - strandat 4318.281 kb on + strand, within HGI48_RS19225at 4318.281 kb on + strandat 4318.281 kb on + strand, within HGI48_RS19225at 4318.415 kb on + strandat 4318.428 kb on + strandat 4318.443 kb on - strandat 4318.502 kb on + strandat 4318.502 kb on + strandat 4318.506 kb on + strandat 4318.506 kb on + strandat 4318.507 kb on - strandat 4318.564 kb on - strandat 4318.569 kb on + strandat 4318.569 kb on + strandat 4318.570 kb on - strandat 4318.700 kb on + strand, within HGI48_RS19230at 4318.805 kb on - strand, within HGI48_RS19230at 4318.860 kb on + strandat 4318.976 kb on - strandat 4318.979 kb on - strand, within HGI48_RS19230at 4319.005 kb on - strand, within HGI48_RS19230at 4319.188 kb on + strand, within HGI48_RS19230at 4319.200 kb on - strand, within HGI48_RS19230at 4319.260 kb on - strand, within HGI48_RS19230at 4319.270 kb on + strand, within HGI48_RS19230at 4319.393 kb on + strand, within HGI48_RS19230at 4319.393 kb on + strand, within HGI48_RS19230at 4319.676 kb on - strand, within HGI48_RS19230at 4319.678 kb on + strand, within HGI48_RS19230at 4319.973 kb on + strandat 4319.974 kb on - strandat 4319.974 kb on - strandat 4319.974 kb on - strandat 4319.982 kb on + strandat 4319.984 kb on + strandat 4320.045 kb on + strand, within HGI48_RS19235at 4320.072 kb on - strandat 4320.083 kb on + strand, within HGI48_RS19235at 4320.083 kb on + strandat 4320.083 kb on + strand, within HGI48_RS19235at 4320.084 kb on - strand, within HGI48_RS19235at 4320.093 kb on + strand, within HGI48_RS19235at 4320.093 kb on + strand, within HGI48_RS19235at 4320.094 kb on - strand, within HGI48_RS19235at 4320.094 kb on - strand, within HGI48_RS19235at 4320.113 kb on + strand, within HGI48_RS19235at 4320.113 kb on + strand, within HGI48_RS19235at 4320.113 kb on + strand, within HGI48_RS19235at 4320.114 kb on - strand, within HGI48_RS19235at 4320.175 kb on - strand, within HGI48_RS19235at 4320.175 kb on - strand, within HGI48_RS19235at 4320.175 kb on - strand, within HGI48_RS19235at 4320.176 kb on + strand, within HGI48_RS19235at 4320.176 kb on + strand, within HGI48_RS19235at 4320.177 kb on - strand, within HGI48_RS19235at 4320.177 kb on - strand, within HGI48_RS19235at 4320.192 kb on + strandat 4320.192 kb on + strand, within HGI48_RS19235at 4320.192 kb on + strand, within HGI48_RS19235at 4320.192 kb on + strand, within HGI48_RS19235at 4320.193 kb on - strand, within HGI48_RS19235at 4320.196 kb on + strand, within HGI48_RS19235at 4320.196 kb on + strandat 4320.229 kb on - strand, within HGI48_RS19235at 4320.274 kb on - strand, within HGI48_RS19235at 4320.279 kb on - strand, within HGI48_RS19235at 4320.360 kb on - strandat 4320.408 kb on - strandat 4320.431 kb on - strandat 4320.442 kb on - strandat 4320.444 kb on - strandat 4320.444 kb on - strandat 4320.444 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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4,317,510 + HGI48_RS19225 0.28 -3.3
4,317,511 - HGI48_RS19225 0.28 +2.6
4,317,697 + HGI48_RS19225 0.42 -1.6
4,317,710 + HGI48_RS19225 0.43 +0.5
4,317,711 - HGI48_RS19225 0.43 -2.2
4,317,739 - HGI48_RS19225 0.46 +1.2
4,317,739 - HGI48_RS19225 0.46 +0.5
4,317,739 - HGI48_RS19225 0.46 +1.0
4,317,739 - HGI48_RS19225 0.46 +0.9
4,317,741 + HGI48_RS19225 0.46 +1.1
4,317,741 + HGI48_RS19225 0.46 -1.1
4,317,741 + HGI48_RS19225 0.46 -2.1
4,317,741 + HGI48_RS19225 0.46 -2.1
4,317,741 + HGI48_RS19225 0.46 -2.5
4,317,741 + HGI48_RS19225 0.46 +0.5
4,317,741 + HGI48_RS19225 0.46 -2.0
4,317,741 + HGI48_RS19225 0.46 -1.6
4,317,741 + -0.4
4,317,741 + HGI48_RS19225 0.46 -0.2
4,317,742 - HGI48_RS19225 0.46 -1.4
4,317,742 - HGI48_RS19225 0.46 -1.4
4,317,742 - HGI48_RS19225 0.46 +0.7
4,317,742 - HGI48_RS19225 0.46 -0.8
4,317,742 - HGI48_RS19225 0.46 -1.1
4,317,742 - HGI48_RS19225 0.46 +1.1
4,317,742 - HGI48_RS19225 0.46 +0.8
4,317,742 - HGI48_RS19225 0.46 -0.8
4,317,742 - HGI48_RS19225 0.46 -1.8
4,317,742 - HGI48_RS19225 0.46 +0.5
4,317,742 - HGI48_RS19225 0.46 +0.9
4,317,742 - HGI48_RS19225 0.46 -2.5
4,317,742 - HGI48_RS19225 0.46 +0.2
4,317,742 - HGI48_RS19225 0.46 -1.1
4,317,742 - HGI48_RS19225 0.46 -2.1
4,317,742 - HGI48_RS19225 0.46 -1.1
4,317,746 + HGI48_RS19225 0.46 -0.4
4,317,838 - HGI48_RS19225 0.53 -0.8
4,317,906 + HGI48_RS19225 0.58 -1.4
4,317,939 + HGI48_RS19225 0.61 +2.0
4,317,939 + HGI48_RS19225 0.61 -0.3
4,317,939 + HGI48_RS19225 0.61 -0.8
4,317,939 + HGI48_RS19225 0.61 +0.2
4,317,939 + HGI48_RS19225 0.61 -1.1
4,317,939 + HGI48_RS19225 0.61 -2.4
4,317,939 + HGI48_RS19225 0.61 +1.7
4,317,940 - HGI48_RS19225 0.61 +1.4
4,317,940 - HGI48_RS19225 0.61 +1.5
4,317,940 - HGI48_RS19225 0.61 -0.8
4,317,966 + -0.4
4,317,966 + HGI48_RS19225 0.63 -0.6
4,317,966 + HGI48_RS19225 0.63 +0.0
4,317,966 + HGI48_RS19225 0.63 +1.2
4,317,967 - HGI48_RS19225 0.63 -0.4
4,317,967 - -0.4
4,317,967 - HGI48_RS19225 0.63 -0.8
4,317,981 + HGI48_RS19225 0.64 +2.1
4,317,982 - +2.2
4,317,982 - HGI48_RS19225 0.64 -2.1
4,317,982 - HGI48_RS19225 0.64 -2.0
4,317,982 - HGI48_RS19225 0.64 -0.3
4,318,159 + HGI48_RS19225 0.78 +0.3
4,318,159 + HGI48_RS19225 0.78 -0.5
4,318,159 + HGI48_RS19225 0.78 -0.8
4,318,159 + HGI48_RS19225 0.78 -1.1
4,318,159 + HGI48_RS19225 0.78 -2.4
4,318,160 - HGI48_RS19225 0.78 -1.1
4,318,160 - HGI48_RS19225 0.78 +0.2
4,318,160 - HGI48_RS19225 0.78 +0.5
4,318,160 - HGI48_RS19225 0.78 -2.0
4,318,160 - HGI48_RS19225 0.78 +0.7
4,318,160 - HGI48_RS19225 0.78 +0.0
4,318,225 + +2.2
4,318,225 + HGI48_RS19225 0.83 -2.0
4,318,241 - HGI48_RS19225 0.84 -0.6
4,318,261 - HGI48_RS19225 0.86 +0.7
4,318,261 - HGI48_RS19225 0.86 +0.5
4,318,261 - HGI48_RS19225 0.86 +0.6
4,318,261 - HGI48_RS19225 0.86 +0.4
4,318,262 + HGI48_RS19225 0.86 +0.9
4,318,262 + HGI48_RS19225 0.86 +1.6
4,318,262 + HGI48_RS19225 0.86 -0.4
4,318,263 - HGI48_RS19225 0.86 +0.7
4,318,263 - HGI48_RS19225 0.86 +2.5
4,318,263 - HGI48_RS19225 0.86 -1.6
4,318,263 - HGI48_RS19225 0.86 -0.7
4,318,263 - HGI48_RS19225 0.86 -2.4
4,318,263 - HGI48_RS19225 0.86 +0.2
4,318,277 - -0.4
4,318,277 - HGI48_RS19225 0.87 +1.8
4,318,277 - HGI48_RS19225 0.87 +0.9
4,318,278 + HGI48_RS19225 0.87 +0.0
4,318,279 - -0.4
4,318,279 - -0.4
4,318,281 + HGI48_RS19225 0.87 -2.9
4,318,281 + -0.4
4,318,281 + HGI48_RS19225 0.87 +0.4
4,318,415 + +0.9
4,318,428 + -1.6
4,318,443 - -0.0
4,318,502 + -1.6
4,318,502 + -1.1
4,318,506 + +1.5
4,318,506 + +0.7
4,318,507 - -3.4
4,318,564 - -1.4
4,318,569 + -1.1
4,318,569 + -0.8
4,318,570 - +0.0
4,318,700 + HGI48_RS19230 0.15 -1.1
4,318,805 - HGI48_RS19230 0.23 -0.4
4,318,860 + +1.2
4,318,976 - +2.0
4,318,979 - HGI48_RS19230 0.35 +1.6
4,319,005 - HGI48_RS19230 0.37 -0.8
4,319,188 + HGI48_RS19230 0.50 -0.4
4,319,200 - HGI48_RS19230 0.51 -1.4
4,319,260 - HGI48_RS19230 0.56 +0.7
4,319,270 + HGI48_RS19230 0.56 -1.4
4,319,393 + HGI48_RS19230 0.65 -2.1
4,319,393 + HGI48_RS19230 0.65 -2.4
4,319,676 - HGI48_RS19230 0.86 -1.4
4,319,678 + HGI48_RS19230 0.86 -0.8
4,319,973 + +1.2
4,319,974 - +1.8
4,319,974 - +0.4
4,319,974 - +0.2
4,319,982 + +0.6
4,319,984 + -0.4
4,320,045 + HGI48_RS19235 0.17 -0.0
4,320,072 - +1.2
4,320,083 + HGI48_RS19235 0.26 +0.2
4,320,083 + -0.4
4,320,083 + HGI48_RS19235 0.26 +2.7
4,320,084 - HGI48_RS19235 0.26 +0.0
4,320,093 + HGI48_RS19235 0.28 -1.8
4,320,093 + HGI48_RS19235 0.28 -0.1
4,320,094 - HGI48_RS19235 0.28 +0.4
4,320,094 - HGI48_RS19235 0.28 +3.3
4,320,113 + HGI48_RS19235 0.33 -2.5
4,320,113 + HGI48_RS19235 0.33 -1.0
4,320,113 + HGI48_RS19235 0.33 -2.0
4,320,114 - HGI48_RS19235 0.33 -0.5
4,320,175 - HGI48_RS19235 0.47 -2.8
4,320,175 - HGI48_RS19235 0.47 -1.8
4,320,175 - HGI48_RS19235 0.47 +0.8
4,320,176 + HGI48_RS19235 0.47 +1.4
4,320,176 + HGI48_RS19235 0.47 -0.8
4,320,177 - HGI48_RS19235 0.48 -0.5
4,320,177 - HGI48_RS19235 0.48 +0.5
4,320,192 + +3.3
4,320,192 + HGI48_RS19235 0.51 -1.6
4,320,192 + HGI48_RS19235 0.51 -0.0
4,320,192 + HGI48_RS19235 0.51 +1.4
4,320,193 - HGI48_RS19235 0.51 +1.0
4,320,196 + HGI48_RS19235 0.52 -1.8
4,320,196 + +0.2
4,320,229 - HGI48_RS19235 0.60 -1.8
4,320,274 - HGI48_RS19235 0.70 -0.8
4,320,279 - HGI48_RS19235 0.72 -2.4
4,320,360 - +0.9
4,320,408 - +1.9
4,320,431 - -1.6
4,320,442 - +1.0
4,320,444 - +3.0
4,320,444 - +1.2
4,320,444 - -0.0

Or see this region's nucleotide sequence