Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS19130

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,294,430	-				-0.1
4,294,430	-				-0.1
4,294,430	-				+1.6
4,294,453	-				-1.1
4,294,453	-				-0.8
4,294,453	-				-0.8
4,294,455	-				+0.6
4,294,470	-				-1.6
4,294,533	-				+1.1
4,294,533	-				+1.0
4,294,574	+				-0.5
4,294,575	-				+1.3
4,294,575	-				-1.6
4,294,598	+				+0.2
4,294,598	+				-0.4
4,294,634	+				+2.1
4,294,689	+				-1.8
4,294,690	-				-1.3
4,294,751	+				+2.9
4,294,809	-				+1.6
4,294,809	-				-3.3
4,294,835	+		HGI48_RS19130	0.10	+2.7
4,294,835	+		HGI48_RS19130	0.10	+1.0
4,294,836	-		HGI48_RS19130	0.10	+1.7
4,294,892	+		HGI48_RS19130	0.12	-1.6
4,294,892	+		HGI48_RS19130	0.12	+0.1
4,294,892	+		HGI48_RS19130	0.12	+0.2
4,294,892	+		HGI48_RS19130	0.12	-1.1
4,294,970	+		HGI48_RS19130	0.14	-1.4
4,295,018	+		HGI48_RS19130	0.15	+0.0
4,295,018	+		HGI48_RS19130	0.15	+0.0
4,295,018	+		HGI48_RS19130	0.15	-1.4
4,295,018	+		HGI48_RS19130	0.15	+1.9
4,295,018	+		HGI48_RS19130	0.15	+0.2
4,295,019	-		HGI48_RS19130	0.15	-1.1
4,295,019	-		HGI48_RS19130	0.15	-0.2
4,295,019	-		HGI48_RS19130	0.15	+0.6
4,295,100	-		HGI48_RS19130	0.17	+3.4
4,295,262	-		HGI48_RS19130	0.22	-1.4
4,295,310	-		HGI48_RS19130	0.23	-0.3
4,295,347	+		HGI48_RS19130	0.24	+2.0
4,295,348	-		HGI48_RS19130	0.24	-1.4
4,295,378	+		HGI48_RS19130	0.25	-1.6
4,295,378	+		HGI48_RS19130	0.25	-3.3
4,295,378	+		HGI48_RS19130	0.25	-0.4
4,295,379	-		HGI48_RS19130	0.25	-1.6
4,295,379	-		HGI48_RS19130	0.25	-2.0
4,295,379	-		HGI48_RS19130	0.25	-0.8
4,295,379	-		HGI48_RS19130	0.25	-1.6
4,295,481	-		HGI48_RS19130	0.28	+1.5
4,295,573	+		HGI48_RS19130	0.30	+0.1
4,295,573	+		HGI48_RS19130	0.30	-1.1
4,295,573	+		HGI48_RS19130	0.30	-1.8
4,295,573	+		HGI48_RS19130	0.30	-0.5
4,295,573	+		HGI48_RS19130	0.30	+1.2
4,295,573	+		HGI48_RS19130	0.30	+2.5
4,295,573	+		HGI48_RS19130	0.30	-0.0
4,295,574	-				-0.4
4,295,574	-		HGI48_RS19130	0.30	-1.8
4,295,574	-		HGI48_RS19130	0.30	-1.3
4,295,574	-				-0.4
4,295,574	-		HGI48_RS19130	0.30	+0.5
4,295,574	-		HGI48_RS19130	0.30	+1.7
4,295,574	-		HGI48_RS19130	0.30	-1.1
4,295,576	-		HGI48_RS19130	0.30	+1.0
4,295,591	+		HGI48_RS19130	0.31	-2.3
4,295,591	+		HGI48_RS19130	0.31	-1.8
4,295,592	-		HGI48_RS19130	0.31	+0.5
4,295,592	-		HGI48_RS19130	0.31	+1.4
4,295,592	-		HGI48_RS19130	0.31	+1.7
4,295,816	+		HGI48_RS19130	0.37	+2.2
4,295,816	+		HGI48_RS19130	0.37	+0.2
4,295,866	+		HGI48_RS19130	0.38	-0.8
4,295,866	+		HGI48_RS19130	0.38	-1.1
4,295,866	+		HGI48_RS19130	0.38	+1.2
4,295,866	+		HGI48_RS19130	0.38	-0.3
4,295,866	+		HGI48_RS19130	0.38	+1.7
4,295,866	+		HGI48_RS19130	0.38	+0.8
4,295,866	+		HGI48_RS19130	0.38	+0.2
4,295,867	-				-0.4
4,295,867	-		HGI48_RS19130	0.38	-1.1
4,295,867	-		HGI48_RS19130	0.38	+2.2
4,295,935	-		HGI48_RS19130	0.40	+1.0
4,295,948	+		HGI48_RS19130	0.40	+0.8
4,296,146	+		HGI48_RS19130	0.46	+1.2
4,296,326	+		HGI48_RS19130	0.51	+0.4
4,296,326	+				-0.4
4,296,327	-		HGI48_RS19130	0.51	+1.1
4,296,327	-		HGI48_RS19130	0.51	-0.8
4,296,327	-				+1.9
4,296,383	+		HGI48_RS19130	0.52	-0.8
4,296,386	+		HGI48_RS19130	0.52	+2.1
4,296,387	-		HGI48_RS19130	0.52	+0.5
4,296,445	+		HGI48_RS19130	0.54	+1.2
4,296,445	+		HGI48_RS19130	0.54	-2.3
4,296,445	+				+3.2
4,296,446	-		HGI48_RS19130	0.54	+0.6
4,296,446	-		HGI48_RS19130	0.54	-1.1
4,296,527	+		HGI48_RS19130	0.56	+1.0
4,296,528	-		HGI48_RS19130	0.56	+1.2
4,296,528	-		HGI48_RS19130	0.56	-0.8
4,296,528	-		HGI48_RS19130	0.56	-2.3
4,296,528	-		HGI48_RS19130	0.56	-0.5
4,296,753	+		HGI48_RS19130	0.62	+0.7
4,297,002	-		HGI48_RS19130	0.69	-0.8
4,297,002	-		HGI48_RS19130	0.69	+2.5
4,297,222	-		HGI48_RS19130	0.75	+1.1
4,297,289	+		HGI48_RS19130	0.77	-0.2
4,297,289	+		HGI48_RS19130	0.77	-2.0
4,297,337	+		HGI48_RS19130	0.78	-1.4
4,297,337	+		HGI48_RS19130	0.78	-0.1
4,297,337	+		HGI48_RS19130	0.78	-1.4
4,297,337	+		HGI48_RS19130	0.78	-1.6
4,297,337	+				-0.4
4,297,337	+		HGI48_RS19130	0.78	+1.9
4,297,337	+		HGI48_RS19130	0.78	-2.5
4,297,337	+		HGI48_RS19130	0.78	+1.4
4,297,338	-		HGI48_RS19130	0.78	+1.8
4,297,338	-		HGI48_RS19130	0.78	-0.7
4,297,338	-				-0.4
4,297,338	-		HGI48_RS19130	0.78	-1.8
4,297,338	-		HGI48_RS19130	0.78	-1.6
4,297,370	+		HGI48_RS19130	0.79	-2.1
4,297,371	-		HGI48_RS19130	0.79	-1.4
4,297,371	-		HGI48_RS19130	0.79	-1.6
4,297,371	-				-0.4
4,297,404	+		HGI48_RS19130	0.80	+1.2
4,297,443	+		HGI48_RS19130	0.81	+0.0
4,297,444	-		HGI48_RS19130	0.81	+1.3
4,297,445	+				-0.4
4,297,446	-		HGI48_RS19130	0.81	-1.4
4,297,612	-				+2.2
4,297,683	+		HGI48_RS19130	0.88	-1.4
4,297,684	-				+1.2
4,297,688	+				-0.4
4,297,716	+		HGI48_RS19130	0.88	-0.8
4,297,717	-		HGI48_RS19130	0.89	-1.8
4,297,725	+		HGI48_RS19130	0.89	-1.4
4,297,757	+		HGI48_RS19130	0.90	+1.7
4,297,757	+		HGI48_RS19130	0.90	-1.8
4,297,758	-		HGI48_RS19130	0.90	+1.9
4,297,758	-		HGI48_RS19130	0.90	+1.0
4,297,758	-				+0.6
4,297,929	-				-0.1
4,297,929	-				-1.1
4,298,052	-				-0.4
4,298,052	-				+0.2
4,298,091	+				-2.1
4,298,092	-				+0.9
4,298,092	-				-1.1
4,298,116	+				-1.6
4,298,116	+				+1.2
4,298,116	+				-2.0
4,298,117	-				-2.8
4,298,135	-				-2.4
4,298,145	+				+0.2
4,298,146	-				+1.2
4,298,146	-				+0.2
4,298,146	-				+0.2
4,298,146	-				-2.5
4,298,146	-				+0.4
4,298,146	-				+0.2
4,298,184	+				-1.6
4,298,213	+				-1.1
4,298,214	-				-2.3
4,298,214	-				-0.5
4,298,225	-				+0.2
4,298,405	-		HGI48_RS19135	0.12	-2.1
4,298,418	+		HGI48_RS19135	0.14	-3.2
4,298,418	+		HGI48_RS19135	0.14	+1.5
4,298,418	+		HGI48_RS19135	0.14	+0.1
4,298,419	-		HGI48_RS19135	0.14	-0.8
4,298,530	+		HGI48_RS19135	0.27	-2.0
4,298,530	+		HGI48_RS19135	0.27	-1.8
4,298,530	+		HGI48_RS19135	0.27	+0.9
4,298,531	-		HGI48_RS19135	0.27	-0.8
4,298,531	-		HGI48_RS19135	0.27	-2.1
4,298,580	-				+1.2
4,298,580	-		HGI48_RS19135	0.33	-0.1
4,298,733	-		HGI48_RS19135	0.52	+0.7
4,298,868	+		HGI48_RS19135	0.68	+1.0
4,298,868	+		HGI48_RS19135	0.68	+1.9
4,298,868	+		HGI48_RS19135	0.68	+0.6
4,298,868	+		HGI48_RS19135	0.68	+2.0
4,298,868	+		HGI48_RS19135	0.68	+2.4
4,298,869	-		HGI48_RS19135	0.68	-0.5
4,298,869	-		HGI48_RS19135	0.68	-0.8
4,298,869	-		HGI48_RS19135	0.68	-2.4
4,298,869	-				-0.4
4,298,870	+		HGI48_RS19135	0.68	+0.2
4,298,870	+				+1.6
4,298,871	-		HGI48_RS19135	0.68	+1.2
4,298,871	-		HGI48_RS19135	0.68	-0.8
4,299,107	+				+1.5
4,299,107	+				-2.5
4,299,108	-				+2.7
4,299,108	-				+0.9
4,299,111	+				-1.6
4,299,111	+				+2.2
4,299,111	+				+0.9
4,299,112	-				-1.0
4,299,112	-				+0.9
4,299,112	-				+1.3
4,299,112	-				-2.7
4,299,112	-				+1.4