Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS19060

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,278,039	-		HGI48_RS19055	0.62	-0.4
4,278,048	-		HGI48_RS19055	0.63	-1.1
4,278,135	-		HGI48_RS19055	0.72	-1.4
4,278,447	+				-0.2
4,278,498	-				-0.2
4,278,513	-				+3.0
4,278,513	-				-0.6
4,278,518	+				+1.6
4,278,528	+				+1.2
4,278,529	-				-1.4
4,278,538	-				-0.4
4,278,538	-				+0.4
4,278,543	-				-0.5
4,278,543	-				-0.5
4,278,543	-				+2.7
4,278,543	-				-0.4
4,278,589	+				-2.3
4,278,639	-				+0.5
4,278,639	-				+0.2
4,278,652	+				+0.4
4,278,757	+				-0.8
4,278,783	+				+1.2
4,278,857	+				-2.7
4,278,862	+				+0.3
4,278,866	+				-1.8
4,278,867	-				+0.2
4,278,867	-				+0.5
4,278,904	+				-2.5
4,278,904	+				-0.4
4,278,904	+				-0.1
4,279,126	+		HGI48_RS19060	0.14	+1.2
4,279,126	+		HGI48_RS19060	0.14	-1.6
4,279,126	+		HGI48_RS19060	0.14	+1.0
4,279,126	+		HGI48_RS19060	0.14	-1.1
4,279,126	+		HGI48_RS19060	0.14	+0.3
4,279,126	+				-0.4
4,279,126	+		HGI48_RS19060	0.14	-0.8
4,279,126	+				-0.4
4,279,126	+		HGI48_RS19060	0.14	+1.8
4,279,126	+		HGI48_RS19060	0.14	+1.4
4,279,126	+		HGI48_RS19060	0.14	+0.2
4,279,126	+		HGI48_RS19060	0.14	-0.1
4,279,127	-		HGI48_RS19060	0.14	-0.8
4,279,127	-		HGI48_RS19060	0.14	+0.3
4,279,127	-		HGI48_RS19060	0.14	+0.2
4,279,127	-		HGI48_RS19060	0.14	-0.8
4,279,127	-		HGI48_RS19060	0.14	+1.5
4,279,127	-		HGI48_RS19060	0.14	-1.1
4,279,127	-		HGI48_RS19060	0.14	+0.7
4,279,127	-		HGI48_RS19060	0.14	-0.1
4,279,127	-		HGI48_RS19060	0.14	-2.8
4,279,127	-		HGI48_RS19060	0.14	+1.3
4,279,127	-		HGI48_RS19060	0.14	+1.7
4,279,127	-		HGI48_RS19060	0.14	-0.9
4,279,129	+		HGI48_RS19060	0.14	+2.4
4,279,129	+		HGI48_RS19060	0.14	-1.6
4,279,129	+		HGI48_RS19060	0.14	-4.1
4,279,130	-		HGI48_RS19060	0.14	-0.1
4,279,130	-		HGI48_RS19060	0.14	+0.5
4,279,130	-		HGI48_RS19060	0.14	-1.6
4,279,361	+		HGI48_RS19060	0.27	+0.9
4,279,362	-		HGI48_RS19060	0.27	-1.4
4,279,406	+		HGI48_RS19060	0.29	-2.0
4,279,406	+		HGI48_RS19060	0.29	+0.7
4,279,406	+		HGI48_RS19060	0.29	+0.9
4,279,406	+		HGI48_RS19060	0.29	-0.1
4,279,406	+		HGI48_RS19060	0.29	-1.7
4,279,407	-		HGI48_RS19060	0.29	-1.1
4,279,407	-				-0.4
4,279,407	-		HGI48_RS19060	0.29	-0.5
4,279,407	-				-0.4
4,279,407	-		HGI48_RS19060	0.29	-1.1
4,279,486	-		HGI48_RS19060	0.34	-1.1
4,279,725	+		HGI48_RS19060	0.47	-2.1
4,279,725	+		HGI48_RS19060	0.47	-0.1
4,279,725	+		HGI48_RS19060	0.47	-2.0
4,279,726	-		HGI48_RS19060	0.47	-0.3
4,279,726	-		HGI48_RS19060	0.47	+1.7
4,279,726	-		HGI48_RS19060	0.47	-0.8
4,279,726	-		HGI48_RS19060	0.47	-1.1
4,279,726	-		HGI48_RS19060	0.47	+0.0
4,279,726	-		HGI48_RS19060	0.47	-3.7
4,279,796	-		HGI48_RS19060	0.51	-0.1
4,279,796	-				+0.2
4,279,796	-		HGI48_RS19060	0.51	+0.8
4,279,796	-		HGI48_RS19060	0.51	+2.3
4,279,796	-				+1.2
4,279,796	-		HGI48_RS19060	0.51	+0.2
4,279,799	+		HGI48_RS19060	0.51	-1.6
4,279,800	-		HGI48_RS19060	0.51	-1.6
4,279,800	-		HGI48_RS19060	0.51	-1.1
4,279,821	+		HGI48_RS19060	0.52	+2.0
4,279,821	+		HGI48_RS19060	0.52	-0.4
4,279,822	-		HGI48_RS19060	0.52	-1.1
4,279,855	+				+0.2
4,279,855	+		HGI48_RS19060	0.54	-1.1
4,279,856	-		HGI48_RS19060	0.54	-0.2
4,279,896	+		HGI48_RS19060	0.56	+1.8
4,279,896	+		HGI48_RS19060	0.56	-2.1
4,279,897	-		HGI48_RS19060	0.56	-1.4
4,279,897	-		HGI48_RS19060	0.56	+0.1
4,279,897	-		HGI48_RS19060	0.56	-2.0
4,279,897	-		HGI48_RS19060	0.56	-2.0
4,279,897	-		HGI48_RS19060	0.56	-0.8
4,279,950	+		HGI48_RS19060	0.59	-0.8
4,279,950	+		HGI48_RS19060	0.59	-1.1
4,279,951	-		HGI48_RS19060	0.59	-0.3
4,279,951	-		HGI48_RS19060	0.59	-1.4
4,279,951	-		HGI48_RS19060	0.59	-0.9
4,279,951	-		HGI48_RS19060	0.59	-1.8
4,279,951	-		HGI48_RS19060	0.59	-2.7
4,279,955	+		HGI48_RS19060	0.60	-0.0
4,280,281	-		HGI48_RS19060	0.78	+1.6
4,280,374	+		HGI48_RS19060	0.83	+0.3
4,280,394	+		HGI48_RS19060	0.84	-2.0
4,280,395	-		HGI48_RS19060	0.84	+0.5
4,280,435	+		HGI48_RS19060	0.86	-0.8
4,280,435	+		HGI48_RS19060	0.86	-2.1
4,280,435	+		HGI48_RS19060	0.86	-1.4
4,280,435	+		HGI48_RS19060	0.86	-1.1
4,280,435	+		HGI48_RS19060	0.86	+0.9
4,280,435	+		HGI48_RS19060	0.86	-1.1
4,280,548	-				-1.1
4,280,548	-				+0.9
4,280,548	-				-1.6
4,280,679	+				-0.2
4,280,679	+				-0.8
4,280,679	+				-0.8
4,280,710	+				-1.0
4,280,710	+				-0.8
4,280,710	+				-1.8
4,280,711	-				-1.6
4,280,749	+		HGI48_RS19065	0.11	-0.6
4,280,749	+		HGI48_RS19065	0.11	-0.4
4,280,750	-		HGI48_RS19065	0.11	+1.7
4,280,750	-		HGI48_RS19065	0.11	-0.1
4,280,750	-		HGI48_RS19065	0.11	+0.0
4,280,750	-		HGI48_RS19065	0.11	-2.7
4,280,750	-		HGI48_RS19065	0.11	-2.3
4,280,750	-		HGI48_RS19065	0.11	+0.4
4,280,762	-		HGI48_RS19065	0.12	-0.7
4,280,762	-		HGI48_RS19065	0.12	+1.0
4,280,762	-		HGI48_RS19065	0.12	+1.2
4,280,797	+		HGI48_RS19065	0.17	-1.6
4,280,797	+		HGI48_RS19065	0.17	+0.4
4,280,798	-		HGI48_RS19065	0.17	-0.3
4,280,798	-				-0.4
4,280,923	+		HGI48_RS19065	0.34	-1.4
4,280,923	+		HGI48_RS19065	0.34	-0.5
4,280,923	+		HGI48_RS19065	0.34	-1.4
4,280,924	-		HGI48_RS19065	0.34	-1.6
4,280,925	+		HGI48_RS19065	0.35	-1.3
4,280,926	-		HGI48_RS19065	0.35	-1.1
4,281,028	+		HGI48_RS19065	0.49	-0.1
4,281,028	+		HGI48_RS19065	0.49	+2.7
4,281,029	-		HGI48_RS19065	0.49	+0.4
4,281,029	-		HGI48_RS19065	0.49	-2.7
4,281,049	-		HGI48_RS19065	0.51	+0.1
4,281,097	+		HGI48_RS19065	0.58	-0.8
4,281,097	+		HGI48_RS19065	0.58	-0.3
4,281,097	+		HGI48_RS19065	0.58	-0.0
4,281,097	+		HGI48_RS19065	0.58	+2.2
4,281,097	+		HGI48_RS19065	0.58	+1.0
4,281,097	+		HGI48_RS19065	0.58	-0.0
4,281,098	-		HGI48_RS19065	0.58	-0.3
4,281,209	-		HGI48_RS19065	0.73	-1.6
4,281,285	+		HGI48_RS19065	0.84	+0.9
4,281,286	-		HGI48_RS19065	0.84	-1.8
4,281,355	-				+0.2
4,281,392	+				-0.8
4,281,392	+				+1.9
4,281,392	+				+1.2
4,281,392	+				+0.5
4,281,392	+				+1.7
4,281,392	+				+0.2
4,281,392	+				+0.8
4,281,393	-				-2.5
4,281,393	-				+1.1
4,281,393	-				+3.0
4,281,404	-				-3.1
4,281,432	+				-2.0
4,281,433	-				+1.9
4,281,433	-				-0.4
4,281,433	-				-2.9
4,281,439	+				-1.1
4,281,439	+				-0.4
4,281,439	+				-1.1
4,281,439	+				-1.1
4,281,440	-				-1.1
4,281,440	-				+1.8
4,281,440	-				-2.1
4,281,440	-				-1.1
4,281,440	-				+0.4
4,281,493	+		HGI48_RS19070	0.19	-0.1
4,281,493	+		HGI48_RS19070	0.19	+0.5
4,281,493	+		HGI48_RS19070	0.19	-0.6
4,281,493	+		HGI48_RS19070	0.19	-2.6
4,281,494	-		HGI48_RS19070	0.19	-1.4
4,281,495	+		HGI48_RS19070	0.19	-0.3
4,281,495	+		HGI48_RS19070	0.19	+0.4
4,281,495	+		HGI48_RS19070	0.19	-0.8
4,281,623	+		HGI48_RS19070	0.52	-2.8
4,281,636	+		HGI48_RS19070	0.55	-0.8
4,281,637	-		HGI48_RS19070	0.55	+1.4
4,281,637	-		HGI48_RS19070	0.55	-1.1