Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS19015

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,267,479	-				+0.2
4,267,490	-		HGI48_RS19010	0.11	+0.6
4,267,497	+		HGI48_RS19010	0.12	+0.5
4,267,498	-		HGI48_RS19010	0.12	+0.5
4,267,498	-		HGI48_RS19010	0.12	-1.4
4,267,498	-		HGI48_RS19010	0.12	+0.2
4,267,531	-				+2.8
4,267,544	+		HGI48_RS19010	0.17	-1.5
4,267,544	+		HGI48_RS19010	0.17	+0.2
4,267,545	-		HGI48_RS19010	0.17	+2.7
4,267,545	-		HGI48_RS19010	0.17	-1.6
4,267,545	-		HGI48_RS19010	0.17	+1.5
4,267,550	+		HGI48_RS19010	0.18	-0.2
4,267,550	+		HGI48_RS19010	0.18	-1.8
4,267,550	+		HGI48_RS19010	0.18	-1.6
4,267,550	+		HGI48_RS19010	0.18	-1.4
4,267,550	+		HGI48_RS19010	0.18	+0.9
4,267,550	+		HGI48_RS19010	0.18	+0.5
4,267,551	-		HGI48_RS19010	0.18	+1.2
4,267,556	-		HGI48_RS19010	0.18	+1.2
4,267,632	-		HGI48_RS19010	0.27	+0.9
4,267,670	-		HGI48_RS19010	0.31	+2.1
4,267,682	-		HGI48_RS19010	0.32	-1.6
4,267,699	+		HGI48_RS19010	0.34	+0.2
4,267,699	+		HGI48_RS19010	0.34	+0.4
4,267,699	+		HGI48_RS19010	0.34	+0.9
4,267,700	-		HGI48_RS19010	0.34	+0.2
4,267,700	-		HGI48_RS19010	0.34	-1.6
4,267,700	-		HGI48_RS19010	0.34	+1.5
4,267,700	-		HGI48_RS19010	0.34	+0.9
4,267,712	+		HGI48_RS19010	0.36	-1.8
4,267,721	-		HGI48_RS19010	0.37	-0.4
4,267,721	-		HGI48_RS19010	0.37	-2.6
4,267,722	+		HGI48_RS19010	0.37	+0.4
4,267,722	+				+1.9
4,267,722	+		HGI48_RS19010	0.37	-1.1
4,267,723	-				+0.6
4,267,723	-		HGI48_RS19010	0.37	+0.6
4,267,723	-		HGI48_RS19010	0.37	+0.9
4,267,781	+		HGI48_RS19010	0.43	-2.5
4,267,781	+		HGI48_RS19010	0.43	+0.9
4,267,782	-		HGI48_RS19010	0.43	+0.2
4,267,782	-		HGI48_RS19010	0.43	-2.1
4,267,785	+				+0.2
4,267,785	+		HGI48_RS19010	0.44	+0.6
4,267,786	-		HGI48_RS19010	0.44	+0.4
4,267,786	-		HGI48_RS19010	0.44	+0.8
4,267,786	-		HGI48_RS19010	0.44	+1.1
4,267,786	-		HGI48_RS19010	0.44	-1.4
4,267,786	-		HGI48_RS19010	0.44	+2.1
4,267,792	+				+1.2
4,267,815	+		HGI48_RS19010	0.47	-2.0
4,267,815	+		HGI48_RS19010	0.47	-1.2
4,267,815	+		HGI48_RS19010	0.47	+0.5
4,267,816	-		HGI48_RS19010	0.47	-1.4
4,267,816	-		HGI48_RS19010	0.47	-2.0
4,267,816	-		HGI48_RS19010	0.47	-1.4
4,267,840	+		HGI48_RS19010	0.50	-0.6
4,267,840	+		HGI48_RS19010	0.50	+3.6
4,267,840	+		HGI48_RS19010	0.50	-1.5
4,267,904	-		HGI48_RS19010	0.57	-1.4
4,267,904	-		HGI48_RS19010	0.57	-1.1
4,267,905	+		HGI48_RS19010	0.57	-1.8
4,267,905	+		HGI48_RS19010	0.57	-0.4
4,267,906	-		HGI48_RS19010	0.57	+1.6
4,267,906	-		HGI48_RS19010	0.57	+1.9
4,267,906	-				+1.2
4,267,915	+		HGI48_RS19010	0.58	-2.6
4,267,923	-		HGI48_RS19010	0.59	+0.6
4,267,923	-		HGI48_RS19010	0.59	+1.2
4,267,976	+		HGI48_RS19010	0.65	-1.8
4,267,977	-		HGI48_RS19010	0.65	+1.2
4,268,016	-		HGI48_RS19010	0.69	-1.6
4,268,016	-		HGI48_RS19010	0.69	-0.7
4,268,019	-		HGI48_RS19010	0.70	-1.1
4,268,019	-		HGI48_RS19010	0.70	+2.4
4,268,032	+				-0.4
4,268,032	+		HGI48_RS19010	0.71	-1.1
4,268,097	+				+0.2
4,268,097	+		HGI48_RS19010	0.78	-1.4
4,268,097	+		HGI48_RS19010	0.78	+0.4
4,268,098	-		HGI48_RS19010	0.78	+0.6
4,268,100	+		HGI48_RS19010	0.79	+0.1
4,268,120	+		HGI48_RS19010	0.81	-0.1
4,268,120	+		HGI48_RS19010	0.81	+0.2
4,268,121	-		HGI48_RS19010	0.81	+1.6
4,268,150	+		HGI48_RS19010	0.84	-2.0
4,268,150	+		HGI48_RS19010	0.84	-1.6
4,268,150	+		HGI48_RS19010	0.84	+1.2
4,268,150	+		HGI48_RS19010	0.84	+1.9
4,268,151	-		HGI48_RS19010	0.84	-2.4
4,268,151	-		HGI48_RS19010	0.84	+1.5
4,268,216	+				-0.8
4,268,282	+				+0.4
4,268,282	+				+1.6
4,268,283	-				+0.6
4,268,283	-				+0.9
4,268,283	-				+0.5
4,268,288	-				-1.1
4,268,288	-				-0.2
4,268,296	+				+1.5
4,268,296	+				+0.9
4,268,296	+				-0.8
4,268,296	+				+2.2
4,268,371	+				+0.2
4,268,371	+				+1.4
4,268,371	+				+1.9
4,268,371	+				-1.6
4,268,372	-				+0.2
4,268,372	-				+0.2
4,268,372	-				-1.4
4,268,372	-				+0.8
4,268,414	+				-2.9
4,268,429	-				-2.3
4,268,429	-				+2.2
4,268,429	-				+1.9
4,268,441	+				-0.5
4,268,441	+				-1.4
4,268,441	+				-0.5
4,268,442	-				-1.4
4,268,442	-				+1.7
4,268,442	-				-0.1
4,268,464	-				-1.3
4,268,482	-				+0.5
4,268,528	+				+1.8
4,268,528	+		HGI48_RS19015	0.13	-0.1
4,268,529	-		HGI48_RS19015	0.13	-1.6
4,268,529	-				+2.4
4,268,529	-		HGI48_RS19015	0.13	-1.4
4,268,529	-		HGI48_RS19015	0.13	-0.7
4,268,529	-		HGI48_RS19015	0.13	-2.5
4,268,529	-		HGI48_RS19015	0.13	+0.7
4,268,536	-		HGI48_RS19015	0.14	-0.6
4,268,556	+				-0.4
4,268,574	-		HGI48_RS19015	0.19	+0.4
4,268,583	+		HGI48_RS19015	0.20	-0.0
4,268,584	-		HGI48_RS19015	0.20	-1.1
4,268,586	+		HGI48_RS19015	0.21	+1.6
4,268,586	+		HGI48_RS19015	0.21	+1.0
4,268,586	+		HGI48_RS19015	0.21	-0.1
4,268,587	-		HGI48_RS19015	0.21	-0.2
4,268,587	-		HGI48_RS19015	0.21	-0.4
4,268,587	-		HGI48_RS19015	0.21	+0.6
4,268,587	-				+2.4
4,268,594	+				+2.8
4,268,698	-		HGI48_RS19015	0.36	+0.5
4,268,698	-		HGI48_RS19015	0.36	+0.8
4,268,698	-		HGI48_RS19015	0.36	+1.4
4,268,698	-		HGI48_RS19015	0.36	-0.1
4,268,699	+		HGI48_RS19015	0.36	+0.2
4,268,707	+		HGI48_RS19015	0.37	-0.8
4,268,707	+				+1.9
4,268,707	+		HGI48_RS19015	0.37	-0.4
4,268,707	+		HGI48_RS19015	0.37	-0.8
4,268,707	+		HGI48_RS19015	0.37	-1.4
4,268,707	+		HGI48_RS19015	0.37	-2.0
4,268,707	+		HGI48_RS19015	0.37	+0.7
4,268,707	+		HGI48_RS19015	0.37	+0.1
4,268,707	+		HGI48_RS19015	0.37	+1.2
4,268,708	-		HGI48_RS19015	0.37	-0.3
4,268,708	-		HGI48_RS19015	0.37	-1.4
4,268,708	-		HGI48_RS19015	0.37	-0.8
4,268,708	-		HGI48_RS19015	0.37	-1.4
4,268,708	-		HGI48_RS19015	0.37	-0.4
4,268,708	-		HGI48_RS19015	0.37	-2.0
4,268,708	-				-0.4
4,268,708	-		HGI48_RS19015	0.37	+0.7
4,268,708	-		HGI48_RS19015	0.37	-0.8
4,268,708	-				+2.5
4,268,708	-		HGI48_RS19015	0.37	-0.1
4,268,708	-		HGI48_RS19015	0.37	-2.0
4,268,708	-		HGI48_RS19015	0.37	+1.3
4,268,709	+		HGI48_RS19015	0.37	+0.2
4,268,709	+		HGI48_RS19015	0.37	+0.1
4,268,710	-		HGI48_RS19015	0.37	-1.8
4,268,724	-				+1.6
4,268,749	-		HGI48_RS19015	0.43	+0.3
4,268,749	-		HGI48_RS19015	0.43	-0.0
4,268,752	+		HGI48_RS19015	0.43	-1.8
4,268,752	+		HGI48_RS19015	0.43	-2.8
4,268,752	+		HGI48_RS19015	0.43	+1.0
4,268,758	-		HGI48_RS19015	0.44	+1.0
4,268,776	+		HGI48_RS19015	0.46	-1.3
4,268,776	+		HGI48_RS19015	0.46	-1.6
4,268,776	+		HGI48_RS19015	0.46	+1.8
4,268,776	+		HGI48_RS19015	0.46	-2.3
4,268,777	-		HGI48_RS19015	0.46	-0.8
4,268,777	-		HGI48_RS19015	0.46	+1.2
4,268,777	-		HGI48_RS19015	0.46	-1.6
4,268,777	-		HGI48_RS19015	0.46	+0.5
4,268,835	+		HGI48_RS19015	0.54	-0.1
4,268,835	+		HGI48_RS19015	0.54	+0.5
4,268,835	+		HGI48_RS19015	0.54	-1.1
4,268,835	+		HGI48_RS19015	0.54	+0.7
4,268,835	+		HGI48_RS19015	0.54	-0.8
4,268,835	+		HGI48_RS19015	0.54	+1.1
4,268,836	-		HGI48_RS19015	0.54	-0.5
4,268,836	-		HGI48_RS19015	0.54	-0.8
4,268,836	-		HGI48_RS19015	0.54	+1.3
4,268,836	-				+1.6
4,268,836	-		HGI48_RS19015	0.54	+1.4
4,268,844	-		HGI48_RS19015	0.55	+0.9
4,268,878	+				+0.2
4,268,933	+		HGI48_RS19015	0.67	+0.8
4,268,933	+		HGI48_RS19015	0.67	+0.8
4,268,933	+		HGI48_RS19015	0.67	+2.5
4,268,933	+		HGI48_RS19015	0.67	+1.0
4,268,933	+		HGI48_RS19015	0.67	-2.0
4,269,020	-				+2.4
4,269,043	-		HGI48_RS19015	0.82	-0.8
4,269,075	+		HGI48_RS19015	0.86	-1.6
4,269,101	+		HGI48_RS19015	0.90	-0.8
4,269,106	+				-2.4
4,269,106	+				+1.2
4,269,107	-				-1.8
4,269,107	-				+0.2
4,269,107	-				-1.8
4,269,175	+				+0.1
4,269,176	-				+1.5
4,269,188	+				-0.8
4,269,195	+				+2.8
4,269,263	-				+1.4
4,269,263	-				+1.4
4,269,263	-				+1.9
4,269,283	+				+1.7
4,269,294	+				-0.4
4,269,294	+				+0.5
4,269,294	+				+0.2
4,269,294	+				-0.4
4,269,294	+				-0.1
4,269,294	+				+0.5
4,269,294	+				-0.6
4,269,294	+				-2.0
4,269,295	-				+0.3
4,269,295	-				-1.8
4,269,295	-				-2.3
4,269,295	-				+0.9
4,269,363	+		HGI48_RS19020	0.16	+0.3
4,269,363	+				+1.2
4,269,364	-		HGI48_RS19020	0.16	+0.9
4,269,364	-		HGI48_RS19020	0.16	-1.6
4,269,364	-		HGI48_RS19020	0.16	-1.6
4,269,364	-		HGI48_RS19020	0.16	-0.9
4,269,369	+		HGI48_RS19020	0.17	+0.7
4,269,370	-		HGI48_RS19020	0.17	+1.2
4,269,370	-		HGI48_RS19020	0.17	-3.2
4,269,428	-		HGI48_RS19020	0.25	+1.2
4,269,460	+				-0.4
4,269,521	+				-0.4
4,269,521	+		HGI48_RS19020	0.39	-0.8
4,269,522	-		HGI48_RS19020	0.39	+0.3
4,269,522	-		HGI48_RS19020	0.39	-2.0
4,269,537	+		HGI48_RS19020	0.41	+1.2
4,269,537	+				-0.4
4,269,537	+		HGI48_RS19020	0.41	+1.3
4,269,537	+		HGI48_RS19020	0.41	+1.0
4,269,540	+		HGI48_RS19020	0.42	-1.1
4,269,540	+		HGI48_RS19020	0.42	-0.0
4,269,541	-		HGI48_RS19020	0.42	-1.1
4,269,574	+		HGI48_RS19020	0.47	+1.3
4,269,574	+		HGI48_RS19020	0.47	-0.4
4,269,574	+		HGI48_RS19020	0.47	-1.8
4,269,574	+		HGI48_RS19020	0.47	-2.0
4,269,574	+		HGI48_RS19020	0.47	-0.8
4,269,607	-		HGI48_RS19020	0.52	-2.5
4,269,670	+		HGI48_RS19020	0.61	+0.2
4,269,670	+		HGI48_RS19020	0.61	-0.3
4,269,670	+		HGI48_RS19020	0.61	-2.1
4,269,670	+		HGI48_RS19020	0.61	+0.2
4,269,670	+		HGI48_RS19020	0.61	-1.5
4,269,671	-		HGI48_RS19020	0.61	+2.2
4,269,671	-				-0.4
4,269,690	+		HGI48_RS19020	0.64	+0.8
4,269,719	-		HGI48_RS19020	0.68	-0.0
4,269,721	+		HGI48_RS19020	0.69	+1.1
4,269,722	-		HGI48_RS19020	0.69	+0.7
4,269,737	+		HGI48_RS19020	0.71	-1.1
4,269,737	+		HGI48_RS19020	0.71	-1.8
4,269,738	-		HGI48_RS19020	0.71	+1.8
4,269,781	-		HGI48_RS19020	0.78	-1.1
4,269,852	+				+0.2
4,269,852	+		HGI48_RS19020	0.88	+2.2
4,269,864	+				+0.4
4,269,864	+				-1.1
4,269,875	+				+0.6
4,269,875	+				+0.2
4,269,876	-				+0.7
4,269,939	-				-1.1
4,269,939	-				+1.2
4,269,939	-				-0.4
4,269,957	+				-2.1
4,269,957	+				+3.0
4,269,957	+				-2.3
4,269,957	+				+0.9
4,269,957	+				-0.6
4,269,957	+				-0.8
4,269,958	-				-1.1
4,269,958	-				+0.9
4,269,961	+				+0.5
4,269,961	+				-0.8
4,269,963	+				-1.4
4,269,963	+				-1.4
4,269,963	+				+1.5
4,269,963	+				-0.4
4,269,964	-				-0.8
4,270,033	+				+0.0
4,270,050	+				+1.0
4,270,053	+				+0.2
4,270,054	-				-1.8
4,270,067	+				+1.2
4,270,068	-				-0.5
4,270,072	+				-1.8
4,270,128	+				+1.4
4,270,128	+				-2.1
4,270,129	-				-1.6
4,270,163	-				-0.7