Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS19005

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,266,050	+		HGI48_RS19000	0.59	+1.4
4,266,050	+		HGI48_RS19000	0.59	+1.6
4,266,087	+		HGI48_RS19000	0.62	-2.3
4,266,123	-		HGI48_RS19000	0.64	-1.6
4,266,123	-		HGI48_RS19000	0.64	+0.6
4,266,160	+		HGI48_RS19000	0.67	+0.1
4,266,207	+		HGI48_RS19000	0.70	+1.3
4,266,211	+		HGI48_RS19000	0.70	-1.1
4,266,211	+		HGI48_RS19000	0.70	+0.7
4,266,212	-		HGI48_RS19000	0.70	-0.4
4,266,212	-		HGI48_RS19000	0.70	-1.6
4,266,214	+		HGI48_RS19000	0.70	-2.5
4,266,214	+		HGI48_RS19000	0.70	+0.4
4,266,215	-		HGI48_RS19000	0.70	+0.6
4,266,215	-				+0.2
4,266,215	-		HGI48_RS19000	0.70	-0.8
4,266,215	-		HGI48_RS19000	0.70	-0.2
4,266,217	-				-0.4
4,266,217	-		HGI48_RS19000	0.70	-0.5
4,266,217	-		HGI48_RS19000	0.70	+1.7
4,266,217	-		HGI48_RS19000	0.70	+1.5
4,266,224	-				+3.5
4,266,226	+		HGI48_RS19000	0.71	-0.8
4,266,227	-		HGI48_RS19000	0.71	-0.0
4,266,307	-		HGI48_RS19000	0.76	+1.4
4,266,317	+		HGI48_RS19000	0.77	+1.2
4,266,317	+		HGI48_RS19000	0.77	+1.1
4,266,317	+		HGI48_RS19000	0.77	-2.5
4,266,317	+		HGI48_RS19000	0.77	+0.7
4,266,317	+		HGI48_RS19000	0.77	+0.9
4,266,317	+				+1.2
4,266,317	+		HGI48_RS19000	0.77	+0.2
4,266,317	+		HGI48_RS19000	0.77	+0.0
4,266,317	+		HGI48_RS19000	0.77	-1.1
4,266,318	-		HGI48_RS19000	0.77	-1.4
4,266,318	-		HGI48_RS19000	0.77	-1.0
4,266,318	-		HGI48_RS19000	0.77	+0.9
4,266,318	-		HGI48_RS19000	0.77	-1.1
4,266,318	-		HGI48_RS19000	0.77	-2.1
4,266,318	-		HGI48_RS19000	0.77	+0.1
4,266,408	+		HGI48_RS19000	0.83	+1.1
4,266,409	-		HGI48_RS19000	0.83	-1.6
4,266,409	-				+1.6
4,266,423	+		HGI48_RS19000	0.84	+1.0
4,266,423	+		HGI48_RS19000	0.84	+1.0
4,266,423	+		HGI48_RS19000	0.84	+0.5
4,266,548	+				+1.6
4,266,548	+				+0.0
4,266,548	+				+1.5
4,266,548	+				-0.8
4,266,548	+				+1.8
4,266,549	-				-0.8
4,266,549	-				+0.9
4,266,549	-				-0.8
4,266,549	-				+2.4
4,266,549	-				-0.4
4,266,549	-				+0.5
4,266,549	-				-0.0
4,266,549	-				-1.4
4,266,549	-				+1.9
4,266,555	+				-0.6
4,266,555	+				-1.1
4,266,555	+				-0.8
4,266,555	+				-2.5
4,266,555	+				+1.2
4,266,555	+				-2.0
4,266,555	+				-1.6
4,266,556	-				+0.7
4,266,556	-				+0.3
4,266,556	-				+1.4
4,266,556	-				-1.4
4,266,556	-				+1.2
4,266,589	+				+2.0
4,266,589	+				-1.6
4,266,600	+				+1.2
4,266,698	-				-1.4
4,266,867	+				+2.6
4,266,867	+				-1.4
4,266,867	+				-2.1
4,266,867	+				-0.8
4,266,867	+				-1.6
4,266,867	+				+2.9
4,266,868	-				-0.1
4,266,868	-				+0.0
4,266,926	-				+1.4
4,266,926	-				+3.2
4,266,979	-				-2.1
4,266,979	-				+1.0
4,266,979	-				-3.5
4,266,979	-				+1.2
4,266,979	-				+0.9
4,266,979	-				+1.7
4,267,032	+				+1.2
4,267,032	+				+1.2
4,267,035	+				+0.4
4,267,035	+				+0.4
4,267,036	-				+1.2
4,267,036	-				-1.1
4,267,295	+				-0.7
4,267,295	+				-1.8
4,267,296	-				-0.8
4,267,296	-				+0.9
4,267,317	+				+1.4
4,267,335	+				+0.9
4,267,335	+				-1.4
4,267,340	+				+1.2
4,267,340	+				+1.2
4,267,340	+				-0.8
4,267,340	+				+1.5
4,267,372	+				+0.3
4,267,372	+				+0.1
4,267,372	+				-2.3
4,267,372	+				+0.0
4,267,372	+				+2.2
4,267,372	+				+0.6
4,267,372	+				+0.9
4,267,372	+				-1.6
4,267,373	-				+2.4
4,267,373	-				+2.2
4,267,373	-				+0.9
4,267,373	-				-0.4
4,267,373	-				-2.5
4,267,373	-				-2.4
4,267,373	-				-1.8
4,267,373	-				+0.0
4,267,381	+				-2.1
4,267,407	+				+0.4
4,267,408	-				+0.2
4,267,479	-				+0.2
4,267,490	-		HGI48_RS19010	0.11	+0.6
4,267,497	+		HGI48_RS19010	0.12	+0.5
4,267,498	-		HGI48_RS19010	0.12	+0.5
4,267,498	-		HGI48_RS19010	0.12	-1.4
4,267,498	-		HGI48_RS19010	0.12	+0.2
4,267,531	-				+2.8
4,267,544	+		HGI48_RS19010	0.17	-1.5
4,267,544	+		HGI48_RS19010	0.17	+0.2
4,267,545	-		HGI48_RS19010	0.17	+2.7
4,267,545	-		HGI48_RS19010	0.17	-1.6
4,267,545	-		HGI48_RS19010	0.17	+1.5
4,267,550	+		HGI48_RS19010	0.18	-0.2
4,267,550	+		HGI48_RS19010	0.18	-1.8
4,267,550	+		HGI48_RS19010	0.18	-1.6
4,267,550	+		HGI48_RS19010	0.18	-1.4
4,267,550	+		HGI48_RS19010	0.18	+0.9
4,267,550	+		HGI48_RS19010	0.18	+0.5
4,267,551	-		HGI48_RS19010	0.18	+1.2
4,267,556	-		HGI48_RS19010	0.18	+1.2
4,267,632	-		HGI48_RS19010	0.27	+0.9
4,267,670	-		HGI48_RS19010	0.31	+2.1
4,267,682	-		HGI48_RS19010	0.32	-1.6
4,267,699	+		HGI48_RS19010	0.34	+0.2
4,267,699	+		HGI48_RS19010	0.34	+0.4
4,267,699	+		HGI48_RS19010	0.34	+0.9
4,267,700	-		HGI48_RS19010	0.34	+0.2
4,267,700	-		HGI48_RS19010	0.34	-1.6
4,267,700	-		HGI48_RS19010	0.34	+1.5
4,267,700	-		HGI48_RS19010	0.34	+0.9
4,267,712	+		HGI48_RS19010	0.36	-1.8
4,267,721	-		HGI48_RS19010	0.37	-0.4
4,267,721	-		HGI48_RS19010	0.37	-2.6
4,267,722	+		HGI48_RS19010	0.37	+0.4
4,267,722	+				+1.9
4,267,722	+		HGI48_RS19010	0.37	-1.1
4,267,723	-				+0.6
4,267,723	-		HGI48_RS19010	0.37	+0.6
4,267,723	-		HGI48_RS19010	0.37	+0.9
4,267,781	+		HGI48_RS19010	0.43	-2.5
4,267,781	+		HGI48_RS19010	0.43	+0.9
4,267,782	-		HGI48_RS19010	0.43	+0.2
4,267,782	-		HGI48_RS19010	0.43	-2.1
4,267,785	+				+0.2
4,267,785	+		HGI48_RS19010	0.44	+0.6
4,267,786	-		HGI48_RS19010	0.44	+0.4
4,267,786	-		HGI48_RS19010	0.44	+0.8
4,267,786	-		HGI48_RS19010	0.44	+1.1
4,267,786	-		HGI48_RS19010	0.44	-1.4
4,267,786	-		HGI48_RS19010	0.44	+2.1
4,267,792	+				+1.2
4,267,815	+		HGI48_RS19010	0.47	-2.0
4,267,815	+		HGI48_RS19010	0.47	-1.2
4,267,815	+		HGI48_RS19010	0.47	+0.5
4,267,816	-		HGI48_RS19010	0.47	-1.4
4,267,816	-		HGI48_RS19010	0.47	-2.0
4,267,816	-		HGI48_RS19010	0.47	-1.4
4,267,840	+		HGI48_RS19010	0.50	-0.6
4,267,840	+		HGI48_RS19010	0.50	+3.6
4,267,840	+		HGI48_RS19010	0.50	-1.5
4,267,904	-		HGI48_RS19010	0.57	-1.4
4,267,904	-		HGI48_RS19010	0.57	-1.1
4,267,905	+		HGI48_RS19010	0.57	-1.8
4,267,905	+		HGI48_RS19010	0.57	-0.4
4,267,906	-		HGI48_RS19010	0.57	+1.6
4,267,906	-		HGI48_RS19010	0.57	+1.9
4,267,906	-				+1.2
4,267,915	+		HGI48_RS19010	0.58	-2.6
4,267,923	-		HGI48_RS19010	0.59	+0.6
4,267,923	-		HGI48_RS19010	0.59	+1.2
4,267,976	+		HGI48_RS19010	0.65	-1.8
4,267,977	-		HGI48_RS19010	0.65	+1.2
4,268,016	-		HGI48_RS19010	0.69	-1.6
4,268,016	-		HGI48_RS19010	0.69	-0.7
4,268,019	-		HGI48_RS19010	0.70	-1.1
4,268,019	-		HGI48_RS19010	0.70	+2.4
4,268,032	+				-0.4
4,268,032	+		HGI48_RS19010	0.71	-1.1
4,268,097	+				+0.2
4,268,097	+		HGI48_RS19010	0.78	-1.4
4,268,097	+		HGI48_RS19010	0.78	+0.4
4,268,098	-		HGI48_RS19010	0.78	+0.6
4,268,100	+		HGI48_RS19010	0.79	+0.1
4,268,120	+		HGI48_RS19010	0.81	-0.1
4,268,120	+		HGI48_RS19010	0.81	+0.2
4,268,121	-		HGI48_RS19010	0.81	+1.6
4,268,150	+		HGI48_RS19010	0.84	-2.0
4,268,150	+		HGI48_RS19010	0.84	-1.6
4,268,150	+		HGI48_RS19010	0.84	+1.2
4,268,150	+		HGI48_RS19010	0.84	+1.9
4,268,151	-		HGI48_RS19010	0.84	-2.4
4,268,151	-		HGI48_RS19010	0.84	+1.5
4,268,216	+				-0.8