Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS18995

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS18990 and HGI48_RS18995 are separated by 63 nucleotidesHGI48_RS18995 and HGI48_RS19000 are separated by 3 nucleotides HGI48_RS18990: HGI48_RS18990 - chlorinating enzyme, at 4,263,857 to 4,264,804 _RS18990 HGI48_RS18995: HGI48_RS18995 - hypothetical protein, at 4,264,868 to 4,265,134 _RS18995 HGI48_RS19000: HGI48_RS19000 - amino acid adenylation domain-containing protein, at 4,265,138 to 4,266,673 _RS19000 Position (kb) 4264 4265 4266Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4263.878 kb on + strandat 4263.878 kb on + strandat 4263.878 kb on + strandat 4263.878 kb on + strandat 4263.879 kb on - strandat 4263.879 kb on - strandat 4263.879 kb on - strandat 4263.879 kb on - strandat 4263.879 kb on - strandat 4263.889 kb on + strandat 4263.960 kb on + strand, within HGI48_RS18990at 4263.960 kb on + strand, within HGI48_RS18990at 4263.960 kb on + strand, within HGI48_RS18990at 4263.960 kb on + strand, within HGI48_RS18990at 4263.961 kb on - strandat 4263.961 kb on - strand, within HGI48_RS18990at 4263.961 kb on - strand, within HGI48_RS18990at 4263.961 kb on - strand, within HGI48_RS18990at 4263.961 kb on - strand, within HGI48_RS18990at 4263.961 kb on - strand, within HGI48_RS18990at 4263.961 kb on - strand, within HGI48_RS18990at 4263.961 kb on - strand, within HGI48_RS18990at 4263.964 kb on + strandat 4263.964 kb on + strand, within HGI48_RS18990at 4263.965 kb on - strand, within HGI48_RS18990at 4263.965 kb on - strand, within HGI48_RS18990at 4263.965 kb on - strand, within HGI48_RS18990at 4263.976 kb on + strand, within HGI48_RS18990at 4263.977 kb on - strand, within HGI48_RS18990at 4264.019 kb on - strand, within HGI48_RS18990at 4264.072 kb on + strandat 4264.190 kb on + strand, within HGI48_RS18990at 4264.190 kb on + strand, within HGI48_RS18990at 4264.191 kb on - strand, within HGI48_RS18990at 4264.191 kb on - strand, within HGI48_RS18990at 4264.249 kb on + strand, within HGI48_RS18990at 4264.249 kb on + strand, within HGI48_RS18990at 4264.250 kb on - strand, within HGI48_RS18990at 4264.254 kb on - strand, within HGI48_RS18990at 4264.254 kb on - strand, within HGI48_RS18990at 4264.254 kb on - strand, within HGI48_RS18990at 4264.266 kb on + strand, within HGI48_RS18990at 4264.267 kb on - strand, within HGI48_RS18990at 4264.290 kb on + strand, within HGI48_RS18990at 4264.290 kb on + strand, within HGI48_RS18990at 4264.290 kb on + strand, within HGI48_RS18990at 4264.291 kb on - strand, within HGI48_RS18990at 4264.319 kb on - strand, within HGI48_RS18990at 4264.415 kb on + strandat 4264.416 kb on - strand, within HGI48_RS18990at 4264.508 kb on - strand, within HGI48_RS18990at 4264.558 kb on + strand, within HGI48_RS18990at 4264.559 kb on - strand, within HGI48_RS18990at 4264.567 kb on + strand, within HGI48_RS18990at 4264.611 kb on + strand, within HGI48_RS18990at 4264.688 kb on + strand, within HGI48_RS18990at 4264.725 kb on + strandat 4264.746 kb on + strandat 4264.746 kb on + strandat 4264.770 kb on - strandat 4264.909 kb on - strand, within HGI48_RS18995at 4264.910 kb on + strand, within HGI48_RS18995at 4265.230 kb on + strandat 4265.230 kb on + strandat 4265.230 kb on + strandat 4265.230 kb on + strandat 4265.231 kb on - strandat 4265.231 kb on - strandat 4265.231 kb on - strandat 4265.233 kb on - strandat 4265.233 kb on - strandat 4265.233 kb on - strandat 4265.233 kb on - strandat 4265.235 kb on - strandat 4265.336 kb on + strand, within HGI48_RS19000at 4265.336 kb on + strand, within HGI48_RS19000at 4265.336 kb on + strand, within HGI48_RS19000at 4265.336 kb on + strand, within HGI48_RS19000at 4265.336 kb on + strand, within HGI48_RS19000at 4265.337 kb on - strand, within HGI48_RS19000at 4265.337 kb on - strand, within HGI48_RS19000at 4265.337 kb on - strand, within HGI48_RS19000at 4265.337 kb on - strand, within HGI48_RS19000at 4265.337 kb on - strand, within HGI48_RS19000at 4265.337 kb on - strand, within HGI48_RS19000at 4265.337 kb on - strandat 4265.337 kb on - strand, within HGI48_RS19000at 4265.337 kb on - strand, within HGI48_RS19000at 4265.467 kb on + strand, within HGI48_RS19000at 4265.467 kb on + strand, within HGI48_RS19000at 4265.467 kb on + strand, within HGI48_RS19000at 4265.467 kb on + strand, within HGI48_RS19000at 4265.468 kb on - strand, within HGI48_RS19000at 4265.495 kb on + strand, within HGI48_RS19000at 4265.496 kb on - strand, within HGI48_RS19000at 4265.511 kb on + strand, within HGI48_RS19000at 4265.514 kb on + strandat 4265.514 kb on + strand, within HGI48_RS19000at 4265.514 kb on + strand, within HGI48_RS19000at 4265.515 kb on - strand, within HGI48_RS19000at 4265.525 kb on + strand, within HGI48_RS19000at 4265.580 kb on - strand, within HGI48_RS19000at 4265.734 kb on + strand, within HGI48_RS19000at 4265.768 kb on - strandat 4265.772 kb on + strand, within HGI48_RS19000at 4265.772 kb on + strand, within HGI48_RS19000at 4265.777 kb on - strand, within HGI48_RS19000at 4265.780 kb on - strand, within HGI48_RS19000at 4265.788 kb on + strand, within HGI48_RS19000at 4265.929 kb on + strand, within HGI48_RS19000at 4266.050 kb on + strand, within HGI48_RS19000at 4266.050 kb on + strand, within HGI48_RS19000at 4266.087 kb on + strand, within HGI48_RS19000at 4266.123 kb on - strand, within HGI48_RS19000at 4266.123 kb on - strand, within HGI48_RS19000

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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4,263,878 + +0.9
4,263,878 + -0.4
4,263,878 + -1.8
4,263,878 + +0.1
4,263,879 - +1.4
4,263,879 - -0.4
4,263,879 - +1.6
4,263,879 - +1.5
4,263,879 - -1.9
4,263,889 + -0.4
4,263,960 + HGI48_RS18990 0.11 -1.4
4,263,960 + HGI48_RS18990 0.11 -0.8
4,263,960 + HGI48_RS18990 0.11 +0.5
4,263,960 + HGI48_RS18990 0.11 +2.8
4,263,961 - +2.5
4,263,961 - HGI48_RS18990 0.11 -0.6
4,263,961 - HGI48_RS18990 0.11 -0.1
4,263,961 - HGI48_RS18990 0.11 +0.1
4,263,961 - HGI48_RS18990 0.11 -0.3
4,263,961 - HGI48_RS18990 0.11 -0.4
4,263,961 - HGI48_RS18990 0.11 -0.3
4,263,961 - HGI48_RS18990 0.11 -0.1
4,263,964 + -0.4
4,263,964 + HGI48_RS18990 0.11 +0.2
4,263,965 - HGI48_RS18990 0.11 -1.4
4,263,965 - HGI48_RS18990 0.11 -0.4
4,263,965 - HGI48_RS18990 0.11 -2.1
4,263,976 + HGI48_RS18990 0.13 -0.8
4,263,977 - HGI48_RS18990 0.13 -1.4
4,264,019 - HGI48_RS18990 0.17 -1.4
4,264,072 + +2.6
4,264,190 + HGI48_RS18990 0.35 -1.1
4,264,190 + HGI48_RS18990 0.35 +1.5
4,264,191 - HGI48_RS18990 0.35 +0.5
4,264,191 - HGI48_RS18990 0.35 -2.5
4,264,249 + HGI48_RS18990 0.41 +1.4
4,264,249 + HGI48_RS18990 0.41 -1.8
4,264,250 - HGI48_RS18990 0.41 +0.0
4,264,254 - HGI48_RS18990 0.42 -1.6
4,264,254 - HGI48_RS18990 0.42 -0.0
4,264,254 - HGI48_RS18990 0.42 +0.7
4,264,266 + HGI48_RS18990 0.43 -1.6
4,264,267 - HGI48_RS18990 0.43 +1.8
4,264,290 + HGI48_RS18990 0.46 +2.5
4,264,290 + HGI48_RS18990 0.46 +1.2
4,264,290 + HGI48_RS18990 0.46 +0.1
4,264,291 - HGI48_RS18990 0.46 +1.1
4,264,319 - HGI48_RS18990 0.49 -0.8
4,264,415 + +0.2
4,264,416 - HGI48_RS18990 0.59 -2.4
4,264,508 - HGI48_RS18990 0.69 +1.3
4,264,558 + HGI48_RS18990 0.74 +1.2
4,264,559 - HGI48_RS18990 0.74 -1.6
4,264,567 + HGI48_RS18990 0.75 +0.6
4,264,611 + HGI48_RS18990 0.80 +1.2
4,264,688 + HGI48_RS18990 0.88 -2.5
4,264,725 + -0.2
4,264,746 + +0.5
4,264,746 + +0.2
4,264,770 - +0.5
4,264,909 - HGI48_RS18995 0.15 +0.9
4,264,910 + HGI48_RS18995 0.16 -0.6
4,265,230 + -1.4
4,265,230 + -1.8
4,265,230 + +0.7
4,265,230 + -0.8
4,265,231 - +0.6
4,265,231 - -0.5
4,265,231 - +1.2
4,265,233 - -1.1
4,265,233 - -0.0
4,265,233 - -1.5
4,265,233 - +0.1
4,265,235 - +1.7
4,265,336 + HGI48_RS19000 0.13 +0.5
4,265,336 + HGI48_RS19000 0.13 -1.6
4,265,336 + HGI48_RS19000 0.13 +0.5
4,265,336 + HGI48_RS19000 0.13 -2.4
4,265,336 + HGI48_RS19000 0.13 -2.1
4,265,337 - HGI48_RS19000 0.13 -0.5
4,265,337 - HGI48_RS19000 0.13 -0.8
4,265,337 - HGI48_RS19000 0.13 -0.7
4,265,337 - HGI48_RS19000 0.13 +0.5
4,265,337 - HGI48_RS19000 0.13 -2.0
4,265,337 - HGI48_RS19000 0.13 -0.1
4,265,337 - +0.6
4,265,337 - HGI48_RS19000 0.13 -1.1
4,265,337 - HGI48_RS19000 0.13 +0.4
4,265,467 + HGI48_RS19000 0.21 +2.6
4,265,467 + HGI48_RS19000 0.21 +1.9
4,265,467 + HGI48_RS19000 0.21 -1.1
4,265,467 + HGI48_RS19000 0.21 +0.7
4,265,468 - HGI48_RS19000 0.21 -1.3
4,265,495 + HGI48_RS19000 0.23 +0.4
4,265,496 - HGI48_RS19000 0.23 +0.5
4,265,511 + HGI48_RS19000 0.24 +0.1
4,265,514 + +3.3
4,265,514 + HGI48_RS19000 0.24 -2.6
4,265,514 + HGI48_RS19000 0.24 -2.3
4,265,515 - HGI48_RS19000 0.25 -1.4
4,265,525 + HGI48_RS19000 0.25 +0.7
4,265,580 - HGI48_RS19000 0.29 +0.2
4,265,734 + HGI48_RS19000 0.39 +1.2
4,265,768 - -0.4
4,265,772 + HGI48_RS19000 0.41 -1.6
4,265,772 + HGI48_RS19000 0.41 -2.4
4,265,777 - HGI48_RS19000 0.42 +0.5
4,265,780 - HGI48_RS19000 0.42 +2.2
4,265,788 + HGI48_RS19000 0.42 +0.7
4,265,929 + HGI48_RS19000 0.51 +0.2
4,266,050 + HGI48_RS19000 0.59 +1.4
4,266,050 + HGI48_RS19000 0.59 +1.6
4,266,087 + HGI48_RS19000 0.62 -2.3
4,266,123 - HGI48_RS19000 0.64 -1.6
4,266,123 - HGI48_RS19000 0.64 +0.6

Or see this region's nucleotide sequence