Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS15460

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,477,973	+		HGI48_RS15455	0.34	+0.9
3,477,973	+		HGI48_RS15455	0.34	-1.4
3,477,973	+		HGI48_RS15455	0.34	+0.3
3,477,973	+		HGI48_RS15455	0.34	-0.6
3,477,974	-		HGI48_RS15455	0.34	+0.2
3,478,035	+		HGI48_RS15455	0.38	+1.3
3,478,035	+		HGI48_RS15455	0.38	-1.1
3,478,036	-		HGI48_RS15455	0.38	+2.7
3,478,082	+				+3.5
3,478,082	+		HGI48_RS15455	0.41	+1.1
3,478,083	-				+0.9
3,478,127	-		HGI48_RS15455	0.44	+0.9
3,478,150	+		HGI48_RS15455	0.46	+2.1
3,478,238	-		HGI48_RS15455	0.52	+2.0
3,478,253	+		HGI48_RS15455	0.53	+0.4
3,478,253	+		HGI48_RS15455	0.53	-1.0
3,478,254	-		HGI48_RS15455	0.53	-1.1
3,478,254	-		HGI48_RS15455	0.53	-0.5
3,478,254	-		HGI48_RS15455	0.53	-1.0
3,478,292	-		HGI48_RS15455	0.55	-0.5
3,478,292	-		HGI48_RS15455	0.55	-1.6
3,478,292	-		HGI48_RS15455	0.55	+0.1
3,478,301	-		HGI48_RS15455	0.56	-2.0
3,478,320	-		HGI48_RS15455	0.57	+0.2
3,478,351	+				-0.1
3,478,366	+		HGI48_RS15455	0.60	+1.6
3,478,464	+		HGI48_RS15455	0.67	-1.4
3,478,508	-		HGI48_RS15455	0.70	-0.2
3,478,554	+		HGI48_RS15455	0.73	-1.6
3,478,554	+				-0.1
3,478,554	+		HGI48_RS15455	0.73	+0.6
3,478,554	+		HGI48_RS15455	0.73	-1.1
3,478,554	+		HGI48_RS15455	0.73	-0.9
3,478,554	+		HGI48_RS15455	0.73	+0.9
3,478,554	+		HGI48_RS15455	0.73	+0.7
3,478,555	-		HGI48_RS15455	0.73	+1.5
3,478,555	-		HGI48_RS15455	0.73	-1.5
3,478,555	-		HGI48_RS15455	0.73	-0.3
3,478,677	+				+3.8
3,478,678	-		HGI48_RS15455	0.81	+0.9
3,478,678	-				+2.3
3,478,732	+		HGI48_RS15455	0.85	+1.5
3,478,805	+				+2.5
3,478,805	+				-0.1
3,478,805	+				-0.8
3,478,805	+				+0.8
3,478,806	-				-1.6
3,478,806	-				-2.5
3,478,806	-				-1.9
3,478,806	-				+1.9
3,478,806	-				+0.2
3,478,806	-				-2.8
3,478,896	+				-1.9
3,478,897	-				+0.1
3,478,903	+				+1.1
3,478,937	+				-1.9
3,478,937	+				-0.9
3,478,945	+				-2.4
3,478,945	+				+1.4
3,478,946	-				+0.2
3,478,950	-				+0.9
3,478,961	+				+1.8
3,479,038	+				-1.4
3,479,038	+				-0.4
3,479,039	-				+3.7
3,479,053	+				-1.4
3,479,053	+				+1.4
3,479,053	+				-0.5
3,479,054	-				-1.9
3,479,054	-				+0.4
3,479,054	-				-1.9
3,479,054	-				-0.4
3,479,054	-				-1.9
3,479,057	+				-1.9
3,479,057	+				-1.1
3,479,058	-				-1.1
3,479,058	-				-0.1
3,479,143	+		HGI48_RS15460	0.17	+0.7
3,479,144	-		HGI48_RS15460	0.17	-1.1
3,479,146	+		HGI48_RS15460	0.17	-2.5
3,479,146	+		HGI48_RS15460	0.17	-0.6
3,479,313	+		HGI48_RS15460	0.31	-1.1
3,479,329	+		HGI48_RS15460	0.32	+0.2
3,479,329	+		HGI48_RS15460	0.32	-3.1
3,479,329	+		HGI48_RS15460	0.32	-1.4
3,479,330	-		HGI48_RS15460	0.32	-1.4
3,479,330	-		HGI48_RS15460	0.32	-2.8
3,479,331	+		HGI48_RS15460	0.32	+0.5
3,479,331	+		HGI48_RS15460	0.32	+0.6
3,479,332	-		HGI48_RS15460	0.32	+0.7
3,479,452	-		HGI48_RS15460	0.42	-1.2
3,479,498	-		HGI48_RS15460	0.46	+1.3
3,479,498	-		HGI48_RS15460	0.46	+0.6
3,479,660	-				-0.1
3,479,660	-		HGI48_RS15460	0.59	+0.6
3,479,662	+		HGI48_RS15460	0.60	-1.6
3,479,662	+		HGI48_RS15460	0.60	-0.4
3,479,662	+		HGI48_RS15460	0.60	-1.6
3,479,663	-		HGI48_RS15460	0.60	-0.7
3,479,663	-		HGI48_RS15460	0.60	+0.5
3,479,754	+		HGI48_RS15460	0.67	+1.9
3,479,754	+		HGI48_RS15460	0.67	-1.1
3,479,754	+		HGI48_RS15460	0.67	+1.4
3,479,756	+		HGI48_RS15460	0.67	+0.0
3,479,776	+		HGI48_RS15460	0.69	-1.9
3,479,831	+		HGI48_RS15460	0.74	+1.4
3,479,912	+		HGI48_RS15460	0.80	-1.1
3,479,945	+		HGI48_RS15460	0.83	-0.4
3,479,946	-		HGI48_RS15460	0.83	+0.8
3,479,946	-		HGI48_RS15460	0.83	-1.1
3,479,994	+		HGI48_RS15460	0.87	+1.9
3,479,995	-		HGI48_RS15460	0.87	+1.7
3,480,024	-		HGI48_RS15460	0.90	+0.4
3,480,037	-				-0.9
3,480,113	-				-1.3
3,480,122	+				-1.6
3,480,125	+				-2.1
3,480,125	+				-0.1
3,480,208	+				+0.9
3,480,242	-		HGI48_RS15465	0.17	-0.7
3,480,265	-		HGI48_RS15465	0.23	+1.3
3,480,274	+		HGI48_RS15465	0.25	+0.8
3,480,274	+		HGI48_RS15465	0.25	+1.8
3,480,299	-		HGI48_RS15465	0.31	+1.0
3,480,299	-				-0.6
3,480,353	+		HGI48_RS15465	0.44	+0.5
3,480,353	+		HGI48_RS15465	0.44	+0.4
3,480,354	-		HGI48_RS15465	0.44	-1.4
3,480,354	-		HGI48_RS15465	0.44	-0.3
3,480,354	-		HGI48_RS15465	0.44	-1.1
3,480,354	-		HGI48_RS15465	0.44	-1.2
3,480,368	-		HGI48_RS15465	0.47	-2.6
3,480,446	+		HGI48_RS15465	0.66	-1.0
3,480,447	-		HGI48_RS15465	0.66	+2.6
3,480,485	+		HGI48_RS15465	0.75	-1.4
3,480,486	-				+0.9
3,480,492	-				+0.9
3,480,492	-		HGI48_RS15465	0.77	-2.5
3,480,497	-		HGI48_RS15465	0.78	+0.7
3,480,511	+		HGI48_RS15465	0.81	-1.4
3,480,523	+		HGI48_RS15465	0.84	+0.2
3,480,523	+		HGI48_RS15465	0.84	-1.2
3,480,524	-		HGI48_RS15465	0.84	-2.1
3,480,527	+		HGI48_RS15465	0.85	-1.9
3,480,527	+		HGI48_RS15465	0.85	+0.2
3,480,528	-		HGI48_RS15465	0.85	+1.4
3,480,620	+				-0.9
3,480,621	-				+0.9
3,480,629	+				+0.2
3,480,632	+				-0.6
3,480,633	-				+2.8
3,480,650	-				+1.4
3,480,664	+		HGI48_RS15470	0.12	-1.1
3,480,664	+		HGI48_RS15470	0.12	+0.5
3,480,680	+		HGI48_RS15470	0.16	+0.5
3,480,680	+		HGI48_RS15470	0.16	+0.2
3,480,886	-		HGI48_RS15470	0.72	+0.1
3,480,934	+		HGI48_RS15470	0.85	+0.2
3,480,935	-		HGI48_RS15470	0.85	-1.6
3,480,939	-		HGI48_RS15470	0.86	-0.6
3,480,974	+				-0.1
3,480,975	-				-0.4
3,480,978	-				-2.2
3,480,978	-				+0.3
3,481,009	+				-0.4
3,481,009	+				+0.6
3,481,009	+				+0.8
3,481,010	-				-3.1
3,481,010	-				+0.1
3,481,010	-				-1.1
3,481,072	+		HGI48_RS15475	0.16	+0.6
3,481,072	+		HGI48_RS15475	0.16	-0.3
3,481,073	-		HGI48_RS15475	0.16	-1.4
3,481,073	-		HGI48_RS15475	0.16	-1.4
3,481,073	-		HGI48_RS15475	0.16	-1.0
3,481,074	+		HGI48_RS15475	0.16	-0.5
3,481,126	+		HGI48_RS15475	0.26	+0.1
3,481,126	+		HGI48_RS15475	0.26	-1.8
3,481,126	+		HGI48_RS15475	0.26	-1.3
3,481,127	-		HGI48_RS15475	0.26	-0.0