Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS14850

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,347,352	+		HGI48_RS14845	0.46	+0.5
3,347,352	+		HGI48_RS14845	0.46	-2.9
3,347,352	+		HGI48_RS14845	0.46	-1.2
3,347,352	+		HGI48_RS14845	0.46	+1.1
3,347,352	+		HGI48_RS14845	0.46	-2.1
3,347,352	+				-0.1
3,347,352	+		HGI48_RS14845	0.46	-0.5
3,347,353	-		HGI48_RS14845	0.46	+1.9
3,347,353	-		HGI48_RS14845	0.46	-1.4
3,347,353	-		HGI48_RS14845	0.46	-2.3
3,347,353	-		HGI48_RS14845	0.46	-0.2
3,347,353	-		HGI48_RS14845	0.46	+1.1
3,347,353	-		HGI48_RS14845	0.46	-1.4
3,347,353	-		HGI48_RS14845	0.46	+2.3
3,347,353	-		HGI48_RS14845	0.46	-0.3
3,347,357	-				+1.3
3,347,372	+		HGI48_RS14845	0.47	+1.1
3,347,372	+		HGI48_RS14845	0.47	-2.3
3,347,373	-		HGI48_RS14845	0.47	-0.4
3,347,408	+		HGI48_RS14845	0.49	-1.4
3,347,408	+		HGI48_RS14845	0.49	+0.6
3,347,409	-		HGI48_RS14845	0.49	-2.1
3,347,409	-		HGI48_RS14845	0.49	-0.4
3,347,409	-		HGI48_RS14845	0.49	-1.4
3,347,413	+		HGI48_RS14845	0.49	+0.2
3,347,473	+		HGI48_RS14845	0.53	-0.7
3,347,480	-		HGI48_RS14845	0.53	-1.4
3,347,536	+		HGI48_RS14845	0.57	-1.4
3,347,537	-		HGI48_RS14845	0.57	+0.3
3,347,567	+		HGI48_RS14845	0.59	+0.3
3,347,568	-		HGI48_RS14845	0.59	-1.7
3,347,576	+		HGI48_RS14845	0.59	+0.7
3,347,576	+		HGI48_RS14845	0.59	-2.4
3,347,576	+		HGI48_RS14845	0.59	-1.0
3,347,580	+		HGI48_RS14845	0.59	+1.4
3,347,580	+		HGI48_RS14845	0.59	+0.9
3,347,581	-		HGI48_RS14845	0.59	+0.1
3,347,600	+		HGI48_RS14845	0.61	-2.8
3,347,600	+		HGI48_RS14845	0.61	+0.9
3,347,601	-		HGI48_RS14845	0.61	+1.5
3,347,639	+		HGI48_RS14845	0.63	-0.2
3,347,639	+				+1.3
3,347,639	+		HGI48_RS14845	0.63	-2.6
3,347,640	-		HGI48_RS14845	0.63	-0.4
3,347,668	+		HGI48_RS14845	0.65	-1.7
3,347,669	-		HGI48_RS14845	0.65	+0.1
3,347,669	-		HGI48_RS14845	0.65	+0.6
3,347,669	-		HGI48_RS14845	0.65	+2.7
3,347,681	+		HGI48_RS14845	0.65	-1.1
3,347,681	+		HGI48_RS14845	0.65	+1.5
3,347,682	-		HGI48_RS14845	0.66	+2.5
3,347,682	-		HGI48_RS14845	0.66	-1.1
3,347,748	-		HGI48_RS14845	0.70	+2.2
3,347,815	+				-0.7
3,347,815	+		HGI48_RS14845	0.74	-1.4
3,347,821	-		HGI48_RS14845	0.74	+0.9
3,347,866	+				-0.7
3,347,867	-		HGI48_RS14845	0.77	+0.3
3,347,867	-		HGI48_RS14845	0.77	+1.0
3,347,867	-		HGI48_RS14845	0.77	+0.5
3,347,876	-		HGI48_RS14845	0.77	+0.5
3,347,876	-		HGI48_RS14845	0.77	+0.9
3,347,876	-		HGI48_RS14845	0.77	+1.4
3,347,876	-		HGI48_RS14845	0.77	-1.7
3,347,879	+		HGI48_RS14845	0.77	-1.9
3,347,932	+		HGI48_RS14845	0.81	+0.2
3,347,932	+		HGI48_RS14845	0.81	-1.3
3,347,932	+		HGI48_RS14845	0.81	-0.8
3,347,932	+		HGI48_RS14845	0.81	+0.1
3,347,932	+		HGI48_RS14845	0.81	+0.9
3,347,933	-		HGI48_RS14845	0.81	-0.3
3,347,933	-		HGI48_RS14845	0.81	-0.1
3,347,933	-				-0.7
3,347,933	-		HGI48_RS14845	0.81	-1.6
3,347,933	-		HGI48_RS14845	0.81	+1.2
3,347,999	+		HGI48_RS14845	0.85	-0.6
3,348,008	-				+4.1
3,348,017	+		HGI48_RS14845	0.86	-1.4
3,348,017	+		HGI48_RS14845	0.86	-0.6
3,348,018	-		HGI48_RS14845	0.86	+0.3
3,348,018	-				-0.1
3,348,018	-		HGI48_RS14845	0.86	-0.5
3,348,018	-		HGI48_RS14845	0.86	-2.3
3,348,067	+		HGI48_RS14845	0.89	-0.1
3,348,068	-		HGI48_RS14845	0.89	-0.3
3,348,120	+				+0.9
3,348,120	+				+0.4
3,348,131	+				-2.1
3,348,131	+				+0.0
3,348,131	+				-1.4
3,348,131	+				+1.1
3,348,131	+				+1.4
3,348,131	+				-0.1
3,348,131	+				+0.3
3,348,131	+				+2.8
3,348,131	+				+1.4
3,348,131	+				+0.5
3,348,132	-				+1.3
3,348,132	-				-0.5
3,348,132	-				+0.6
3,348,132	-				+0.7
3,348,132	-				-1.4
3,348,132	-				-0.1
3,348,132	-				-0.1
3,348,132	-				+2.5
3,348,132	-				-2.1
3,348,132	-				+1.7
3,348,132	-				+0.8
3,348,132	-				-3.3
3,348,132	-				+2.9
3,348,134	-				+1.1
3,348,134	-				-1.7
3,348,134	-				-2.3
3,348,181	-				+0.6
3,348,181	-				-1.7
3,348,181	-				+1.9
3,348,218	+				-0.7
3,348,218	+				+0.2
3,348,218	+				+0.6
3,348,219	-				+0.1
3,348,219	-				+1.1
3,348,280	+				-0.4
3,348,281	-				-2.3
3,348,318	+				-0.6
3,348,375	+				-1.4
3,348,375	+				-0.7
3,348,375	+				+0.1
3,348,408	+				-0.1
3,348,447	+				-0.1
3,348,447	+		HGI48_RS14850	0.14	+1.1
3,348,559	+		HGI48_RS14850	0.24	-0.1
3,348,568	+		HGI48_RS14850	0.24	-1.7
3,348,579	+		HGI48_RS14850	0.25	-1.4
3,348,585	+				-0.7
3,348,585	+		HGI48_RS14850	0.26	-1.2
3,348,585	+		HGI48_RS14850	0.26	-1.4
3,348,620	+		HGI48_RS14850	0.29	+0.6
3,348,681	+		HGI48_RS14850	0.34	-2.3
3,348,730	+		HGI48_RS14850	0.38	+0.6
3,348,764	+		HGI48_RS14850	0.41	-0.7
3,348,837	+		HGI48_RS14850	0.47	-0.4
3,348,837	+				-0.7
3,348,837	+				+0.3
3,348,852	+		HGI48_RS14850	0.48	+0.5
3,348,852	+		HGI48_RS14850	0.48	-1.9
3,348,910	+		HGI48_RS14850	0.53	-0.6
3,348,955	+		HGI48_RS14850	0.56	-1.4
3,348,955	+		HGI48_RS14850	0.56	-1.7
3,348,959	+				-0.7
3,348,959	+		HGI48_RS14850	0.57	+0.3
3,348,959	+		HGI48_RS14850	0.57	-1.2
3,348,959	+		HGI48_RS14850	0.57	+2.0
3,348,959	+		HGI48_RS14850	0.57	+0.5
3,348,959	+		HGI48_RS14850	0.57	-1.7
3,348,959	+		HGI48_RS14850	0.57	-2.4
3,348,959	+		HGI48_RS14850	0.57	+0.7
3,349,308	+				+4.1
3,349,353	+		HGI48_RS14850	0.89	+0.3
3,349,369	+				+0.9
3,349,369	+				-2.8
3,349,408	+				-1.9
3,349,408	+				-1.7
3,349,409	-				-1.7
3,349,409	-				-1.3
3,349,409	-				-2.4
3,349,462	+				-2.3
3,349,462	+				+0.4
3,349,463	-				+1.3
3,349,463	-				+0.5
3,349,467	+				+0.5
3,349,467	+				-0.6
3,349,467	+				-0.4
3,349,467	+				+0.4
3,349,468	-				-1.4
3,349,519	+				+1.5
3,349,558	+				+0.4
3,349,558	+				+0.4
3,349,558	+				+0.9
3,349,558	+				-0.1
3,349,558	+				-0.7
3,349,559	-				+0.7
3,349,559	-				-0.7
3,349,559	-				+0.6
3,349,559	-				-2.4
3,349,559	-				-1.7
3,349,587	-				+0.9
3,349,648	+				-3.2
3,349,649	-				+1.2
3,349,687	-				-1.7
3,349,710	+				-1.9
3,349,711	-				+0.9
3,349,730	+				+0.3
3,349,730	+				-2.4
3,349,730	+				-0.7
3,349,764	+				+1.5
3,349,764	+				-1.7
3,349,765	-				+0.4
3,349,787	+				+2.1
3,349,787	+				-1.7
3,349,787	+				-0.1
3,349,787	+				-1.7
3,349,836	+				-1.1
3,349,837	-				-1.1
3,349,858	+				-0.1
3,349,862	+				-0.0
3,349,862	+				-1.1
3,349,863	-				-0.7
3,349,863	-				+2.1
3,349,863	-				+0.6
3,349,869	-				+1.9
3,349,947	+		HGI48_RS14855	0.15	+0.6
3,350,014	-		HGI48_RS14855	0.31	-1.0
3,350,038	-		HGI48_RS14855	0.37	+0.3
3,350,038	-		HGI48_RS14855	0.37	-0.1
3,350,045	-		HGI48_RS14855	0.38	+1.0
3,350,117	+		HGI48_RS14855	0.55	-0.0
3,350,117	+		HGI48_RS14855	0.55	-1.1
3,350,136	-		HGI48_RS14855	0.60	+0.5
3,350,136	-		HGI48_RS14855	0.60	+0.5
3,350,163	+		HGI48_RS14855	0.66	-1.7
3,350,171	+		HGI48_RS14855	0.68	-0.4
3,350,171	+		HGI48_RS14855	0.68	-1.4
3,350,172	-		HGI48_RS14855	0.68	+0.6
3,350,182	+		HGI48_RS14855	0.70	-0.1
3,350,185	-		HGI48_RS14855	0.71	+0.5
3,350,185	-		HGI48_RS14855	0.71	+0.1
3,350,185	-		HGI48_RS14855	0.71	-0.1
3,350,285	-				-0.7
3,350,303	+				-0.7
3,350,304	-				-0.3
3,350,304	-				+0.4
3,350,306	-				+1.0
3,350,306	-				+0.5
3,350,306	-				-0.5
3,350,443	-				-1.4
3,350,443	-				+0.6
3,350,446	+				+0.3
3,350,446	+				+0.9
3,350,446	+				-0.7
3,350,447	-				+0.9
3,350,447	-				+2.1
3,350,447	-				-1.4
3,350,447	-				+3.5
3,350,447	-				+0.9
3,350,447	-				-1.7
3,350,448	+				-1.4
3,350,449	-				-0.7
3,350,449	-				-0.7
3,350,452	-				-0.1