Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS14470

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,246,884	+		HGI48_RS14460	0.56	+1.6
3,246,884	+		HGI48_RS14460	0.56	+0.8
3,246,939	+		HGI48_RS14460	0.62	-0.1
3,246,939	+		HGI48_RS14460	0.62	+0.8
3,246,939	+		HGI48_RS14460	0.62	+0.7
3,246,940	-		HGI48_RS14460	0.62	+0.4
3,246,940	-		HGI48_RS14460	0.62	-1.2
3,246,940	-		HGI48_RS14460	0.62	-0.0
3,246,940	-		HGI48_RS14460	0.62	-2.0
3,246,940	-		HGI48_RS14460	0.62	+1.3
3,246,940	-		HGI48_RS14460	0.62	-1.0
3,247,041	+		HGI48_RS14460	0.72	-0.5
3,247,073	+		HGI48_RS14460	0.75	-2.3
3,247,136	+		HGI48_RS14460	0.82	+0.6
3,247,136	+		HGI48_RS14460	0.82	-1.5
3,247,136	+		HGI48_RS14460	0.82	-0.6
3,247,136	+		HGI48_RS14460	0.82	+1.7
3,247,136	+		HGI48_RS14460	0.82	+0.1
3,247,136	+				+0.8
3,247,136	+		HGI48_RS14460	0.82	+1.6
3,247,137	-				+3.4
3,247,137	-				-0.7
3,247,137	-		HGI48_RS14460	0.82	+1.0
3,247,137	-		HGI48_RS14460	0.82	-2.2
3,247,250	+				-1.7
3,247,250	+				+0.5
3,247,250	+				+1.1
3,247,250	+				-1.2
3,247,251	-				-0.8
3,247,251	-				-1.2
3,247,251	-				-0.2
3,247,251	-				-2.0
3,247,251	-				+1.3
3,247,306	+				-1.5
3,247,306	+				+1.6
3,247,307	-				+1.2
3,247,307	-				-2.2
3,247,408	+		HGI48_RS14465	0.19	+0.8
3,247,409	-		HGI48_RS14465	0.19	-1.5
3,247,409	-		HGI48_RS14465	0.19	+0.2
3,247,409	-		HGI48_RS14465	0.19	-0.6
3,247,415	-				-0.2
3,247,415	-		HGI48_RS14465	0.21	+2.2
3,247,542	-		HGI48_RS14465	0.50	-0.2
3,247,571	-		HGI48_RS14465	0.57	-1.7
3,247,635	+		HGI48_RS14465	0.72	-1.7
3,247,635	+		HGI48_RS14465	0.72	-1.5
3,247,635	+		HGI48_RS14465	0.72	+0.6
3,247,635	+		HGI48_RS14465	0.72	-0.6
3,247,635	+		HGI48_RS14465	0.72	+0.8
3,247,636	-				+0.8
3,247,636	-				+0.8
3,247,636	-		HGI48_RS14465	0.72	+1.4
3,247,636	-		HGI48_RS14465	0.72	+1.6
3,247,764	+				-0.7
3,247,765	-				-1.1
3,247,777	-				-0.7
3,248,216	-		HGI48_RS14470	0.29	+0.4
3,248,348	-		HGI48_RS14470	0.38	-2.2
3,248,481	+				-0.7
3,248,495	+		HGI48_RS14470	0.48	-0.1
3,248,516	+		HGI48_RS14470	0.49	-2.2
3,248,516	+		HGI48_RS14470	0.49	-0.2
3,248,516	+		HGI48_RS14470	0.49	+0.8
3,248,516	+		HGI48_RS14470	0.49	-2.3
3,248,516	+		HGI48_RS14470	0.49	-0.2
3,248,516	+		HGI48_RS14470	0.49	+0.8
3,248,516	+		HGI48_RS14470	0.49	+0.5
3,248,516	+		HGI48_RS14470	0.49	-2.9
3,248,517	-		HGI48_RS14470	0.49	-1.3
3,248,517	-		HGI48_RS14470	0.49	+0.3
3,248,517	-		HGI48_RS14470	0.49	+1.0
3,248,517	-		HGI48_RS14470	0.49	-1.6
3,248,517	-		HGI48_RS14470	0.49	+0.4
3,248,722	-		HGI48_RS14470	0.63	+0.1
3,248,791	+		HGI48_RS14470	0.67	+0.4
3,248,791	+		HGI48_RS14470	0.67	-1.6
3,248,792	-		HGI48_RS14470	0.67	-2.3
3,248,792	-				+2.8
3,248,796	+		HGI48_RS14470	0.68	-1.2
3,248,796	+		HGI48_RS14470	0.68	+1.6
3,248,796	+		HGI48_RS14470	0.68	-1.0
3,248,796	+				-0.7
3,248,797	-		HGI48_RS14470	0.68	-1.2
3,248,797	-		HGI48_RS14470	0.68	+1.6
3,248,797	-		HGI48_RS14470	0.68	-1.2
3,248,799	+		HGI48_RS14470	0.68	-2.2
3,248,799	+		HGI48_RS14470	0.68	-2.2
3,248,885	+		HGI48_RS14470	0.74	+0.6
3,248,885	+		HGI48_RS14470	0.74	+0.3
3,248,922	+		HGI48_RS14470	0.76	-3.0
3,248,923	-		HGI48_RS14470	0.76	+0.2
3,248,923	-		HGI48_RS14470	0.76	+1.5
3,249,003	+				-0.7
3,249,003	+		HGI48_RS14470	0.81	+1.3
3,249,003	+		HGI48_RS14470	0.81	-0.1
3,249,003	+		HGI48_RS14470	0.81	-0.6
3,249,004	-		HGI48_RS14470	0.81	+0.3
3,249,004	-		HGI48_RS14470	0.81	+0.5
3,249,004	-		HGI48_RS14470	0.81	+1.0
3,249,191	+				-1.0
3,249,191	+				+0.3
3,249,191	+				+1.4
3,249,191	+				-0.2
3,249,191	+				-1.5
3,249,192	-				-2.3
3,249,192	-				+0.0
3,249,318	-				+0.4
3,249,336	+				-0.4
3,249,337	-				+1.1
3,249,337	-				-1.2
3,249,457	-				-2.3
3,249,491	-				+0.6
3,249,491	-				-2.7
3,249,505	+				+0.5
3,249,505	+				+0.0
3,249,505	+				-1.5
3,249,506	-				+1.0
3,249,506	-				+0.8
3,249,506	-				+1.8
3,249,506	-				-2.2
3,249,516	+				+0.5
3,249,516	+				-1.7
3,249,516	+				-1.2
3,249,516	+				-1.7
3,249,516	+				-1.6
3,249,517	-				+2.5
3,249,520	+				-3.1
3,249,520	+				-0.7
3,249,520	+				-0.2
3,249,520	+				-0.0
3,249,520	+				+0.6
3,249,520	+				+1.0
3,249,520	+				-2.2
3,249,520	+				+0.5
3,249,520	+				-1.2
3,249,520	+				-2.7
3,249,520	+				-1.2
3,249,520	+				-1.0
3,249,521	-				-0.9
3,249,521	-				+0.0
3,249,521	-				-0.5
3,249,521	-				-2.0
3,249,521	-				+1.6
3,249,521	-				-0.5
3,249,521	-				+0.5
3,249,521	-				-1.7
3,249,521	-				+1.3
3,249,521	-				-0.6
3,249,521	-				-1.3
3,249,521	-				+0.6
3,249,521	-				-1.7
3,249,521	-				-1.7
3,249,521	-				+0.7
3,249,521	-				+2.3
3,249,521	-				-2.0
3,249,551	+				+0.8
3,249,601	+				-2.9
3,249,646	+				-1.2
3,249,647	-				+0.8
3,249,647	-				-0.2
3,249,774	+				+3.3
3,249,775	-		HGI48_RS14475	0.15	-1.2
3,249,784	-		HGI48_RS14475	0.16	-1.2
3,249,784	-		HGI48_RS14475	0.16	+1.7
3,249,976	+		HGI48_RS14475	0.31	-0.0
3,249,977	-		HGI48_RS14475	0.31	-0.0
3,250,000	+		HGI48_RS14475	0.33	-0.2
3,250,001	-		HGI48_RS14475	0.33	+0.4
3,250,062	+		HGI48_RS14475	0.38	+0.7
3,250,123	+		HGI48_RS14475	0.43	-1.9
3,250,124	-		HGI48_RS14475	0.43	+2.3
3,250,124	-		HGI48_RS14475	0.43	-2.0
3,250,124	-		HGI48_RS14475	0.43	+0.8
3,250,186	+		HGI48_RS14475	0.48	+2.8