Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS11005

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,385,878	+				+2.2
2,385,896	+				+0.6
2,385,896	+		HGI48_RS11000	0.35	+2.2
2,385,897	-		HGI48_RS11000	0.35	+0.9
2,385,897	-				+2.1
2,385,919	-		HGI48_RS11000	0.36	-1.9
2,385,931	+		HGI48_RS11000	0.37	+2.6
2,386,089	+		HGI48_RS11000	0.51	+0.6
2,386,090	-		HGI48_RS11000	0.51	-3.8
2,386,165	-		HGI48_RS11000	0.57	-1.9
2,386,165	-		HGI48_RS11000	0.57	+2.3
2,386,304	+		HGI48_RS11000	0.68	+1.9
2,386,304	+		HGI48_RS11000	0.68	+1.6
2,386,364	-		HGI48_RS11000	0.73	-1.2
2,386,389	+		HGI48_RS11000	0.75	-1.1
2,386,389	+				+0.1
2,386,512	+		HGI48_RS11000	0.86	+2.0
2,386,512	+		HGI48_RS11000	0.86	-2.4
2,386,513	-		HGI48_RS11000	0.86	+0.6
2,386,513	-		HGI48_RS11000	0.86	-0.6
2,386,566	+				-0.0
2,386,566	+				-0.9
2,386,636	-				-1.7
2,386,735	+				+0.4
2,386,736	-				-0.4
2,386,745	+				+0.3
2,386,772	+				+0.6
2,386,772	+				+2.1
2,386,773	-				+1.6
2,386,773	-				-0.7
2,386,809	+				-0.9
2,386,809	+				-0.4
2,386,810	-				+0.1
2,386,810	-				+1.9
2,386,820	-				+0.6
2,386,820	-				+0.2
2,386,820	-				+0.8
2,386,820	-				-1.9
2,386,820	-				+0.4
2,386,820	-				+0.1
2,386,824	+				+0.1
2,386,824	+				+1.6
2,386,825	-				+1.0
2,386,843	+				+0.2
2,386,843	+				-2.4
2,386,843	+				-1.9
2,386,843	+				-1.1
2,386,844	-				+0.3
2,386,844	-				-1.9
2,386,844	-				-0.4
2,386,854	-				+0.1
2,386,876	+				+2.2
2,386,876	+				+0.9
2,386,877	-				-0.4
2,386,912	+				+0.2
2,386,912	+				-0.5
2,386,913	-				-2.4
2,386,913	-				+1.6
2,386,913	-				-0.7
2,386,913	-				-1.7
2,386,919	+				+1.0
2,386,940	+				-1.7
2,386,940	+				-1.9
2,386,940	+				-1.2
2,386,941	-				-0.5
2,386,941	-				+0.4
2,386,941	-				-2.2
2,386,989	+				-2.4
2,386,990	-				+0.8
2,386,990	-				-0.9
2,386,990	-				-1.9
2,387,015	-				+0.2
2,387,028	+		HGI48_RS11005	0.10	-1.7
2,387,028	+		HGI48_RS11005	0.10	-2.3
2,387,029	-		HGI48_RS11005	0.10	+0.8
2,387,029	-		HGI48_RS11005	0.10	+0.5
2,387,029	-				-0.9
2,387,063	-		HGI48_RS11005	0.12	+0.9
2,387,063	-		HGI48_RS11005	0.12	-1.4
2,387,073	-		HGI48_RS11005	0.13	+0.3
2,387,171	+		HGI48_RS11005	0.19	+1.1
2,387,172	-		HGI48_RS11005	0.19	+2.5
2,387,175	+				-0.9
2,387,191	+		HGI48_RS11005	0.20	-1.4
2,387,193	+		HGI48_RS11005	0.20	+1.8
2,387,193	+		HGI48_RS11005	0.20	+0.5
2,387,193	+		HGI48_RS11005	0.20	-0.4
2,387,194	-		HGI48_RS11005	0.20	+1.1
2,387,194	-		HGI48_RS11005	0.20	+2.3
2,387,194	-		HGI48_RS11005	0.20	-0.8
2,387,197	+		HGI48_RS11005	0.20	-1.7
2,387,197	+		HGI48_RS11005	0.20	+1.6
2,387,198	-		HGI48_RS11005	0.20	-1.4
2,387,198	-		HGI48_RS11005	0.20	+1.9
2,387,215	+		HGI48_RS11005	0.21	-0.2
2,387,342	+		HGI48_RS11005	0.28	+1.1
2,387,410	+		HGI48_RS11005	0.32	+0.3
2,387,411	-		HGI48_RS11005	0.32	+0.2
2,387,457	+		HGI48_RS11005	0.35	-3.4
2,387,457	+		HGI48_RS11005	0.35	-1.7
2,387,457	+		HGI48_RS11005	0.35	+0.8
2,387,457	+		HGI48_RS11005	0.35	+0.4
2,387,458	-		HGI48_RS11005	0.35	+1.5
2,387,458	-		HGI48_RS11005	0.35	+1.7
2,387,458	-				+2.1
2,387,499	+		HGI48_RS11005	0.37	-0.1
2,387,499	+		HGI48_RS11005	0.37	+0.4
2,387,499	+		HGI48_RS11005	0.37	+0.4
2,387,499	+		HGI48_RS11005	0.37	+0.3
2,387,499	+		HGI48_RS11005	0.37	+2.4
2,387,500	-		HGI48_RS11005	0.37	-1.9
2,387,500	-				+2.2
2,387,500	-		HGI48_RS11005	0.37	-0.2
2,387,589	+		HGI48_RS11005	0.42	+1.2
2,387,589	+		HGI48_RS11005	0.42	-1.1
2,387,589	+				-0.4
2,387,590	-				+1.6
2,387,590	-		HGI48_RS11005	0.43	+2.5
2,387,590	-				+2.5
2,387,590	-		HGI48_RS11005	0.43	-0.4
2,387,590	-		HGI48_RS11005	0.43	-0.4
2,387,590	-				+2.8
2,387,590	-		HGI48_RS11005	0.43	+0.6
2,387,605	-				+0.6
2,387,612	+		HGI48_RS11005	0.44	-0.0
2,387,613	-		HGI48_RS11005	0.44	-0.0
2,387,613	-		HGI48_RS11005	0.44	+2.3
2,387,613	-		HGI48_RS11005	0.44	+0.8
2,387,653	-		HGI48_RS11005	0.46	+0.5
2,387,679	+		HGI48_RS11005	0.48	-0.1
2,387,679	+		HGI48_RS11005	0.48	-2.2
2,387,679	+		HGI48_RS11005	0.48	+1.5
2,387,679	+		HGI48_RS11005	0.48	-1.5
2,387,681	+		HGI48_RS11005	0.48	+0.6
2,387,681	+		HGI48_RS11005	0.48	+0.2
2,387,681	+		HGI48_RS11005	0.48	-2.5
2,387,681	+		HGI48_RS11005	0.48	+1.1
2,387,681	+		HGI48_RS11005	0.48	-0.5
2,387,682	-		HGI48_RS11005	0.48	-2.5
2,387,682	-		HGI48_RS11005	0.48	-2.4
2,387,853	+		HGI48_RS11005	0.58	-2.5
2,387,853	+		HGI48_RS11005	0.58	+0.9
2,387,854	-		HGI48_RS11005	0.58	-0.1
2,387,867	+		HGI48_RS11005	0.58	+2.2
2,387,867	+		HGI48_RS11005	0.58	-2.2
2,387,868	-		HGI48_RS11005	0.58	-2.2
2,387,899	+				+1.2
2,387,900	-		HGI48_RS11005	0.60	+0.5
2,387,900	-				+1.1
2,387,900	-		HGI48_RS11005	0.60	-0.1
2,387,900	-		HGI48_RS11005	0.60	+0.2
2,387,900	-		HGI48_RS11005	0.60	-0.8
2,387,904	+		HGI48_RS11005	0.61	+1.0
2,387,964	-		HGI48_RS11005	0.64	-0.0
2,387,964	-		HGI48_RS11005	0.64	-1.7
2,387,989	+		HGI48_RS11005	0.65	+0.3
2,387,990	-		HGI48_RS11005	0.65	-2.4
2,387,991	+				+1.9
2,387,992	-		HGI48_RS11005	0.66	+1.9
2,387,992	-		HGI48_RS11005	0.66	-1.4
2,387,995	+				+2.1
2,388,052	-		HGI48_RS11005	0.69	-0.1
2,388,052	-		HGI48_RS11005	0.69	-3.1
2,388,065	+		HGI48_RS11005	0.70	-1.7
2,388,065	+		HGI48_RS11005	0.70	-1.5
2,388,065	+		HGI48_RS11005	0.70	+0.4
2,388,066	-		HGI48_RS11005	0.70	-0.4
2,388,066	-		HGI48_RS11005	0.70	-0.7
2,388,066	-		HGI48_RS11005	0.70	-1.0
2,388,101	-		HGI48_RS11005	0.72	-1.5
2,388,119	+		HGI48_RS11005	0.73	-1.9
2,388,135	-		HGI48_RS11005	0.74	+1.6
2,388,143	-		HGI48_RS11005	0.74	-1.7
2,388,158	+		HGI48_RS11005	0.75	+0.2
2,388,158	+		HGI48_RS11005	0.75	-1.4
2,388,159	-				+1.1
2,388,174	+		HGI48_RS11005	0.76	-0.9
2,388,174	+		HGI48_RS11005	0.76	-1.4
2,388,174	+		HGI48_RS11005	0.76	-1.9
2,388,174	+				-0.9
2,388,174	+		HGI48_RS11005	0.76	+0.6
2,388,175	-		HGI48_RS11005	0.76	+1.4
2,388,175	-		HGI48_RS11005	0.76	+2.5
2,388,175	-		HGI48_RS11005	0.76	+0.2
2,388,175	-		HGI48_RS11005	0.76	+0.5
2,388,175	-		HGI48_RS11005	0.76	-0.2
2,388,220	+		HGI48_RS11005	0.79	+0.9
2,388,243	-		HGI48_RS11005	0.80	+1.8
2,388,254	-		HGI48_RS11005	0.81	-0.6
2,388,254	-		HGI48_RS11005	0.81	+1.3
2,388,254	-		HGI48_RS11005	0.81	-2.5
2,388,351	+		HGI48_RS11005	0.86	-1.4
2,388,392	+		HGI48_RS11005	0.88	+0.6
2,388,393	-		HGI48_RS11005	0.89	+1.8
2,388,393	-		HGI48_RS11005	0.89	+0.9
2,388,393	-		HGI48_RS11005	0.89	+0.8
2,388,420	-				-1.7
2,388,420	-				+1.9
2,388,509	+				-2.2
2,388,509	+				+1.5
2,388,510	-				+2.1
2,388,543	+				-0.2
2,388,577	+				-0.4
2,388,578	-				+0.2
2,388,646	-				+2.9
2,388,684	+				-0.4
2,388,685	-				-1.4
2,388,685	-				-0.6
2,388,717	+				+1.2
2,388,718	-				-0.5
2,388,740	+		HGI48_RS11010	0.10	+0.4
2,388,741	-		HGI48_RS11010	0.10	-0.1
2,388,741	-		HGI48_RS11010	0.10	-0.1
2,388,741	-				-0.9
2,388,761	-		HGI48_RS11010	0.13	-1.2
2,388,761	-		HGI48_RS11010	0.13	+1.5
2,388,763	+		HGI48_RS11010	0.13	+0.3
2,388,764	-		HGI48_RS11010	0.13	+1.2
2,388,764	-		HGI48_RS11010	0.13	+1.5
2,388,774	+		HGI48_RS11010	0.14	+1.6
2,388,774	+		HGI48_RS11010	0.14	-3.4
2,388,775	-		HGI48_RS11010	0.14	+1.1
2,388,807	+		HGI48_RS11010	0.18	-2.4
2,388,808	-		HGI48_RS11010	0.18	-1.7
2,388,919	-		HGI48_RS11010	0.30	-1.7
2,388,925	-		HGI48_RS11010	0.31	+0.7
2,388,925	-		HGI48_RS11010	0.31	+0.6
2,388,927	+		HGI48_RS11010	0.31	-2.9
2,388,969	+		HGI48_RS11010	0.36	-0.9
2,388,969	+				-0.9
2,388,970	-		HGI48_RS11010	0.36	+1.7
2,388,975	+		HGI48_RS11010	0.36	+0.2
2,388,975	+		HGI48_RS11010	0.36	+1.2
2,389,070	+		HGI48_RS11010	0.47	-2.5
2,389,070	+		HGI48_RS11010	0.47	+1.1
2,389,071	-		HGI48_RS11010	0.47	+1.6
2,389,103	+		HGI48_RS11010	0.51	-1.9
2,389,176	+		HGI48_RS11010	0.59	+0.1
2,389,177	-		HGI48_RS11010	0.59	-1.1
2,389,189	+		HGI48_RS11010	0.60	-0.4
2,389,189	+		HGI48_RS11010	0.60	+0.8
2,389,190	-		HGI48_RS11010	0.61	+1.6
2,389,213	-				-0.9
2,389,221	+		HGI48_RS11010	0.64	+0.9
2,389,236	+		HGI48_RS11010	0.66	+0.7
2,389,237	-		HGI48_RS11010	0.66	-0.9
2,389,247	+		HGI48_RS11010	0.67	-2.5
2,389,253	+		HGI48_RS11010	0.68	-1.7
2,389,253	+		HGI48_RS11010	0.68	+0.2
2,389,253	+		HGI48_RS11010	0.68	-1.9
2,389,254	-		HGI48_RS11010	0.68	-2.0
2,389,281	-				-0.4
2,389,314	+		HGI48_RS11010	0.74	+0.6
2,389,314	+		HGI48_RS11010	0.74	-0.1
2,389,322	+		HGI48_RS11010	0.75	+1.0
2,389,343	-		HGI48_RS11010	0.78	-1.6
2,389,343	-		HGI48_RS11010	0.78	+0.4
2,389,375	-		HGI48_RS11010	0.81	-2.5
2,389,375	-		HGI48_RS11010	0.81	-2.4
2,389,377	+				-0.4
2,389,378	-				+2.0
2,389,392	-		HGI48_RS11010	0.83	+0.3
2,389,450	+		HGI48_RS11010	0.90	-2.8
2,389,471	-				+1.3
2,389,494	+				-0.7
2,389,516	-				-0.7
2,389,543	-				+0.6
2,389,545	+				-1.5
2,389,546	-				+0.1