Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS10765

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,327,520	+				-1.0
2,327,610	+		HGI48_RS10760	0.52	-2.7
2,327,611	-		HGI48_RS10760	0.53	+0.9
2,327,672	-		HGI48_RS10760	0.57	+1.0
2,327,691	+		HGI48_RS10760	0.58	-0.1
2,327,692	-		HGI48_RS10760	0.58	-2.0
2,327,743	+		HGI48_RS10760	0.62	+1.0
2,327,743	+				+3.5
2,327,744	-				-0.4
2,327,754	+		HGI48_RS10760	0.62	-1.4
2,327,754	+		HGI48_RS10760	0.62	+0.4
2,327,794	-		HGI48_RS10760	0.65	+0.8
2,327,794	-		HGI48_RS10760	0.65	-2.4
2,327,794	-		HGI48_RS10760	0.65	-0.5
2,327,794	-		HGI48_RS10760	0.65	+0.1
2,327,794	-		HGI48_RS10760	0.65	+0.6
2,327,794	-		HGI48_RS10760	0.65	+1.3
2,327,845	-		HGI48_RS10760	0.69	-2.0
2,327,845	-		HGI48_RS10760	0.69	+1.6
2,327,887	+		HGI48_RS10760	0.72	-0.3
2,327,887	+		HGI48_RS10760	0.72	-0.2
2,327,888	-				-1.0
2,327,888	-		HGI48_RS10760	0.72	-1.0
2,327,888	-		HGI48_RS10760	0.72	+1.1
2,327,888	-		HGI48_RS10760	0.72	+0.6
2,327,889	+		HGI48_RS10760	0.72	+0.5
2,327,889	+		HGI48_RS10760	0.72	-2.4
2,327,890	-		HGI48_RS10760	0.72	-1.8
2,327,890	-		HGI48_RS10760	0.72	-1.4
2,327,890	-		HGI48_RS10760	0.72	+1.2
2,328,043	+		HGI48_RS10760	0.82	-2.4
2,328,044	-		HGI48_RS10760	0.83	-0.6
2,328,063	+		HGI48_RS10760	0.84	-1.4
2,328,087	+				-1.0
2,328,088	-				+2.6
2,328,089	+		HGI48_RS10760	0.86	-0.9
2,328,089	+		HGI48_RS10760	0.86	-0.6
2,328,089	+		HGI48_RS10760	0.86	+1.6
2,328,090	-		HGI48_RS10760	0.86	+0.4
2,328,090	-		HGI48_RS10760	0.86	-0.1
2,328,090	-		HGI48_RS10760	0.86	-0.2
2,328,152	-				+2.6
2,328,173	+				+0.0
2,328,174	-				+1.2
2,328,174	-				+0.2
2,328,179	+				+2.4
2,328,180	-				+0.1
2,328,180	-				+0.9
2,328,201	+				-0.1
2,328,216	+				+1.7
2,328,216	+				-0.4
2,328,216	+				+3.6
2,328,217	-				+2.5
2,328,217	-				+0.3
2,328,238	-				-3.2
2,328,266	-				+1.6
2,328,266	-				-1.4
2,328,269	+				+0.4
2,328,270	-				-2.7
2,328,275	+				-1.0
2,328,295	+				+0.4
2,328,296	-				-0.4
2,328,299	-				+0.0
2,328,299	-				+1.2
2,328,321	+				-2.4
2,328,321	+				-1.8
2,328,321	+				-2.2
2,328,321	+				+0.8
2,328,321	+				+0.7
2,328,321	+				+1.0
2,328,321	+				+0.9
2,328,322	-				+0.3
2,328,322	-				+2.8
2,328,322	-				+1.3
2,328,322	-				-1.7
2,328,322	-				-3.0
2,328,384	+				-1.1
2,328,464	+				-0.9
2,328,475	-				-0.4
2,328,570	+				-1.7
2,328,599	+				-1.7
2,328,665	+		HGI48_RS10765	0.13	-1.7
2,328,665	+		HGI48_RS10765	0.13	-2.2
2,328,665	+		HGI48_RS10765	0.13	+0.6
2,328,665	+		HGI48_RS10765	0.13	-1.0
2,328,666	-		HGI48_RS10765	0.13	-2.0
2,328,666	-		HGI48_RS10765	0.13	+1.4
2,328,702	+		HGI48_RS10765	0.16	-1.4
2,328,703	-		HGI48_RS10765	0.16	+1.4
2,328,703	-		HGI48_RS10765	0.16	-0.4
2,328,823	+		HGI48_RS10765	0.24	-2.2
2,328,824	-		HGI48_RS10765	0.24	+1.9
2,328,878	+		HGI48_RS10765	0.28	+0.2
2,328,968	+				-1.0
2,328,968	+		HGI48_RS10765	0.34	+0.6
2,328,968	+		HGI48_RS10765	0.34	-2.7
2,328,968	+		HGI48_RS10765	0.34	-1.7
2,328,969	-		HGI48_RS10765	0.35	+0.6
2,328,980	+		HGI48_RS10765	0.35	+0.4
2,328,980	+		HGI48_RS10765	0.35	+0.6
2,328,981	-		HGI48_RS10765	0.35	+2.2
2,328,986	+		HGI48_RS10765	0.36	+0.1
2,328,986	+		HGI48_RS10765	0.36	-2.2
2,328,986	+		HGI48_RS10765	0.36	+0.1
2,328,987	-				+3.5
2,329,005	+				-1.0
2,329,056	+				-1.0
2,329,080	-		HGI48_RS10765	0.42	-0.7
2,329,080	-		HGI48_RS10765	0.42	+0.8
2,329,266	+		HGI48_RS10765	0.56	-2.0
2,329,266	+		HGI48_RS10765	0.56	+1.8
2,329,267	-		HGI48_RS10765	0.56	-2.0
2,329,267	-		HGI48_RS10765	0.56	+0.0
2,329,304	+		HGI48_RS10765	0.58	-0.1
2,329,357	+		HGI48_RS10765	0.62	+1.6
2,329,458	-		HGI48_RS10765	0.69	-1.7
2,329,458	-		HGI48_RS10765	0.69	-0.1
2,329,553	+				+2.6
2,329,554	-		HGI48_RS10765	0.76	-2.2
2,329,592	+				+2.6
2,329,592	+		HGI48_RS10765	0.79	-1.6
2,329,592	+		HGI48_RS10765	0.79	+0.5
2,329,593	-		HGI48_RS10765	0.79	-0.4
2,329,593	-		HGI48_RS10765	0.79	-1.4
2,329,593	-		HGI48_RS10765	0.79	+1.6
2,329,593	-				-1.0
2,329,593	-		HGI48_RS10765	0.79	+1.3
2,329,593	-		HGI48_RS10765	0.79	-1.4
2,329,602	-		HGI48_RS10765	0.80	+0.9
2,329,602	-		HGI48_RS10765	0.80	-1.4
2,329,602	-		HGI48_RS10765	0.80	-1.4
2,329,602	-		HGI48_RS10765	0.80	+0.9
2,329,602	-		HGI48_RS10765	0.80	+2.0
2,329,661	+		HGI48_RS10765	0.84	-0.8
2,329,662	-		HGI48_RS10765	0.84	-0.3
2,329,673	+		HGI48_RS10765	0.85	-2.0
2,329,674	-		HGI48_RS10765	0.85	-1.4
2,329,674	-		HGI48_RS10765	0.85	-0.1
2,329,679	+		HGI48_RS10765	0.85	-0.6
2,329,679	+		HGI48_RS10765	0.85	-0.0
2,329,680	-		HGI48_RS10765	0.85	-2.7
2,329,680	-		HGI48_RS10765	0.85	+0.3
2,329,680	-		HGI48_RS10765	0.85	-2.4
2,329,867	+				-0.4
2,329,868	-				+0.9
2,329,868	-				+0.9
2,329,870	+				-0.3
2,329,901	+				-0.1
2,329,953	-				-3.4
2,330,069	+		HGI48_RS10770	0.13	+0.6
2,330,069	+		HGI48_RS10770	0.13	+0.6
2,330,072	+		HGI48_RS10770	0.13	-1.7
2,330,072	+		HGI48_RS10770	0.13	-1.5
2,330,224	-				-1.0
2,330,450	+				+0.6
2,330,594	+		HGI48_RS10770	0.52	-3.0
2,330,594	+		HGI48_RS10770	0.52	+0.1
2,330,594	+		HGI48_RS10770	0.52	-1.7
2,330,594	+		HGI48_RS10770	0.52	+0.6
2,330,594	+		HGI48_RS10770	0.52	-0.4
2,330,595	-		HGI48_RS10770	0.52	-2.2
2,330,595	-		HGI48_RS10770	0.52	-2.7
2,330,595	-		HGI48_RS10770	0.52	-1.6
2,330,595	-		HGI48_RS10770	0.52	+0.9
2,330,595	-		HGI48_RS10770	0.52	-1.4
2,330,595	-		HGI48_RS10770	0.52	+1.0
2,330,595	-		HGI48_RS10770	0.52	-3.0
2,330,595	-				+2.2
2,330,595	-				-1.0
2,330,595	-		HGI48_RS10770	0.52	-0.2