Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS09665

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,083,508	-				-1.0
2,083,508	-		HGI48_RS09660	0.12	+0.6
2,083,552	+				+0.6
2,083,578	-		HGI48_RS09660	0.22	+1.6
2,083,578	-		HGI48_RS09660	0.22	+0.0
2,083,578	-		HGI48_RS09660	0.22	+0.3
2,083,654	+		HGI48_RS09660	0.32	-2.4
2,083,654	+		HGI48_RS09660	0.32	-1.4
2,083,655	-				-0.4
2,083,690	+		HGI48_RS09660	0.37	-0.7
2,083,709	+		HGI48_RS09660	0.40	-2.0
2,083,775	+		HGI48_RS09660	0.48	-1.0
2,083,853	+		HGI48_RS09660	0.59	-2.9
2,083,853	+		HGI48_RS09660	0.59	-2.4
2,083,853	+		HGI48_RS09660	0.59	-0.5
2,083,853	+				-0.4
2,083,853	+		HGI48_RS09660	0.59	-2.0
2,083,853	+		HGI48_RS09660	0.59	-1.6
2,083,853	+		HGI48_RS09660	0.59	+1.8
2,083,854	-		HGI48_RS09660	0.59	+1.1
2,083,854	-		HGI48_RS09660	0.59	-3.2
2,083,914	-		HGI48_RS09660	0.67	-0.1
2,083,969	+		HGI48_RS09660	0.75	-0.5
2,083,970	-		HGI48_RS09660	0.75	-0.3
2,083,970	-		HGI48_RS09660	0.75	-1.4
2,083,970	-		HGI48_RS09660	0.75	+0.9
2,084,004	-		HGI48_RS09660	0.79	-0.2
2,084,109	+				-1.0
2,084,110	-				-3.2
2,084,110	-				-0.1
2,084,147	+				-1.4
2,084,186	+				+0.9
2,084,187	-				+1.3
2,084,237	+				+0.4
2,084,238	-				-2.1
2,084,404	+				+0.4
2,084,406	+				-2.4
2,084,406	+				+0.1
2,084,406	+				+2.1
2,084,406	+				+2.0
2,084,407	-				+0.3
2,084,407	-				+0.2
2,084,407	-				+0.6
2,084,407	-				-1.4
2,084,410	+				-0.1
2,084,411	-				-1.1
2,084,411	-				+0.6
2,084,413	-				+1.1
2,084,441	-				+0.6
2,084,467	+				+1.2
2,084,467	+				-1.7
2,084,468	-				+0.6
2,084,468	-				+1.9
2,084,468	-				-1.4
2,084,471	+				-1.7
2,084,471	+				-0.8
2,084,471	+				+0.6
2,084,471	+				+0.6
2,084,491	-				+1.0
2,084,576	+				-2.0
2,084,675	+				+0.0
2,084,676	-				+0.2
2,084,706	+		HGI48_RS09665	0.10	-2.2
2,084,707	-		HGI48_RS09665	0.10	-2.9
2,084,746	-		HGI48_RS09665	0.12	-2.0
2,084,754	+		HGI48_RS09665	0.12	-0.7
2,084,754	+		HGI48_RS09665	0.12	-2.2
2,084,755	-		HGI48_RS09665	0.12	-1.4
2,084,757	-		HGI48_RS09665	0.13	-0.4
2,084,763	+		HGI48_RS09665	0.13	-1.4
2,084,763	+		HGI48_RS09665	0.13	-1.3
2,084,764	-		HGI48_RS09665	0.13	-0.5
2,084,793	+		HGI48_RS09665	0.14	+1.0
2,084,793	+				-1.0
2,084,794	-		HGI48_RS09665	0.14	+0.3
2,084,794	-		HGI48_RS09665	0.14	-0.5
2,084,915	+		HGI48_RS09665	0.19	-1.1
2,084,915	+				+1.6
2,084,915	+		HGI48_RS09665	0.19	+0.3
2,084,916	-		HGI48_RS09665	0.20	+0.3
2,084,917	+		HGI48_RS09665	0.20	-0.7
2,084,918	-		HGI48_RS09665	0.20	+0.6
2,084,918	-		HGI48_RS09665	0.20	+0.6
2,084,941	+		HGI48_RS09665	0.21	+1.7
2,084,941	+		HGI48_RS09665	0.21	-0.5
2,084,942	-		HGI48_RS09665	0.21	-1.4
2,084,969	+		HGI48_RS09665	0.22	+0.3
2,084,969	+		HGI48_RS09665	0.22	+0.4
2,084,969	+		HGI48_RS09665	0.22	-2.2
2,084,969	+		HGI48_RS09665	0.22	-1.7
2,084,970	-				-0.4
2,084,974	-		HGI48_RS09665	0.22	-1.0
2,085,007	+		HGI48_RS09665	0.24	+0.6
2,085,007	+		HGI48_RS09665	0.24	+1.9
2,085,007	+				-0.4
2,085,128	+		HGI48_RS09665	0.29	+1.0
2,085,129	-		HGI48_RS09665	0.29	+1.4
2,085,129	-		HGI48_RS09665	0.29	+0.0
2,085,186	+		HGI48_RS09665	0.31	-3.1
2,085,187	-		HGI48_RS09665	0.31	-2.9
2,085,189	+		HGI48_RS09665	0.31	-2.2
2,085,190	-		HGI48_RS09665	0.32	-0.1
2,085,190	-		HGI48_RS09665	0.32	-0.9
2,085,233	+		HGI48_RS09665	0.33	+0.2
2,085,233	+				-1.0
2,085,234	-		HGI48_RS09665	0.33	-2.2
2,085,239	+		HGI48_RS09665	0.34	-0.7
2,085,239	+		HGI48_RS09665	0.34	-1.9
2,085,239	+		HGI48_RS09665	0.34	+0.0
2,085,240	-		HGI48_RS09665	0.34	-0.1
2,085,240	-		HGI48_RS09665	0.34	+0.6
2,085,240	-		HGI48_RS09665	0.34	-0.5
2,085,240	-		HGI48_RS09665	0.34	+0.1
2,085,240	-		HGI48_RS09665	0.34	-3.3
2,085,240	-		HGI48_RS09665	0.34	-0.0
2,085,254	+		HGI48_RS09665	0.34	-1.4
2,085,254	+		HGI48_RS09665	0.34	+0.0
2,085,254	+		HGI48_RS09665	0.34	-0.4
2,085,254	+		HGI48_RS09665	0.34	+0.8
2,085,254	+				+1.6
2,085,255	-		HGI48_RS09665	0.34	-2.0
2,085,255	-				-1.0
2,085,281	+				-0.4
2,085,281	+		HGI48_RS09665	0.36	-0.8
2,085,281	+		HGI48_RS09665	0.36	+0.9
2,085,282	-		HGI48_RS09665	0.36	-2.7
2,085,282	-		HGI48_RS09665	0.36	-0.6
2,085,315	+				-1.0
2,085,315	+		HGI48_RS09665	0.37	+0.2
2,085,315	+		HGI48_RS09665	0.37	-2.0
2,085,316	-		HGI48_RS09665	0.37	-1.7
2,085,415	-		HGI48_RS09665	0.41	-3.1
2,085,419	+				+0.6
2,085,419	+		HGI48_RS09665	0.42	-1.4
2,085,419	+		HGI48_RS09665	0.42	-0.4
2,085,419	+		HGI48_RS09665	0.42	-1.4
2,085,420	-				+3.5
2,085,420	-				-1.0
2,085,420	-				+1.0
2,085,420	-		HGI48_RS09665	0.42	-2.2
2,085,472	-		HGI48_RS09665	0.44	-0.0
2,085,478	+		HGI48_RS09665	0.44	-2.7
2,085,478	+		HGI48_RS09665	0.44	+2.3
2,085,478	+		HGI48_RS09665	0.44	-2.0
2,085,478	+		HGI48_RS09665	0.44	-1.3
2,085,479	-		HGI48_RS09665	0.44	-0.2
2,085,479	-		HGI48_RS09665	0.44	-2.7
2,085,479	-		HGI48_RS09665	0.44	-0.7
2,085,491	-		HGI48_RS09665	0.45	-0.4
2,085,510	-		HGI48_RS09665	0.46	+0.4
2,085,555	-		HGI48_RS09665	0.48	-1.7
2,085,555	-		HGI48_RS09665	0.48	-1.2
2,085,555	-				-1.0
2,085,586	-		HGI48_RS09665	0.49	-3.1
2,085,663	+				+1.6
2,085,668	+		HGI48_RS09665	0.52	+0.7
2,085,668	+		HGI48_RS09665	0.52	+0.0
2,085,669	-		HGI48_RS09665	0.53	+1.3
2,085,757	-				+1.8
2,085,783	-				-0.4
2,085,810	+		HGI48_RS09665	0.59	-0.4
2,085,811	-		HGI48_RS09665	0.59	-1.4
2,085,811	-		HGI48_RS09665	0.59	+0.4
2,085,951	+		HGI48_RS09665	0.65	-2.4
2,085,951	+		HGI48_RS09665	0.65	-2.6
2,085,952	-		HGI48_RS09665	0.65	-1.7
2,085,974	+		HGI48_RS09665	0.66	+0.8
2,085,974	+		HGI48_RS09665	0.66	-3.6
2,085,974	+		HGI48_RS09665	0.66	-0.1
2,086,031	+				-0.4
2,086,190	+				-1.0
2,086,191	-		HGI48_RS09665	0.75	-1.7
2,086,191	-		HGI48_RS09665	0.75	-0.1
2,086,258	+		HGI48_RS09665	0.78	-0.4
2,086,258	+		HGI48_RS09665	0.78	+1.0
2,086,293	+		HGI48_RS09665	0.80	+0.5
2,086,294	-		HGI48_RS09665	0.80	-2.0
2,086,294	-				-0.4
2,086,295	+				-1.0
2,086,295	+		HGI48_RS09665	0.80	+0.1
2,086,295	+		HGI48_RS09665	0.80	-1.1
2,086,306	+		HGI48_RS09665	0.80	-3.2
2,086,306	+		HGI48_RS09665	0.80	-0.5
2,086,307	-		HGI48_RS09665	0.80	-1.1
2,086,307	-				-1.0
2,086,307	-		HGI48_RS09665	0.80	-0.1
2,086,326	+		HGI48_RS09665	0.81	-2.2
2,086,326	+		HGI48_RS09665	0.81	+1.4
2,086,383	+				+1.3
2,086,384	-		HGI48_RS09665	0.84	-2.0
2,086,485	+		HGI48_RS09665	0.88	-2.6
2,086,486	-		HGI48_RS09665	0.88	-1.0
2,086,487	+		HGI48_RS09665	0.88	-2.2
2,086,487	+		HGI48_RS09665	0.88	-1.1
2,086,506	+		HGI48_RS09665	0.89	-3.1
2,086,506	+				-1.0
2,086,506	+		HGI48_RS09665	0.89	-1.1
2,086,507	-		HGI48_RS09665	0.89	+0.1
2,086,519	+		HGI48_RS09665	0.90	-1.4
2,086,519	+		HGI48_RS09665	0.90	-0.6
2,086,519	+		HGI48_RS09665	0.90	+0.2
2,086,519	+		HGI48_RS09665	0.90	-0.2
2,086,519	+		HGI48_RS09665	0.90	-1.4
2,086,519	+		HGI48_RS09665	0.90	+0.5
2,086,520	-		HGI48_RS09665	0.90	-2.0
2,086,520	-				-1.0
2,086,520	-		HGI48_RS09665	0.90	-3.3
2,086,520	-		HGI48_RS09665	0.90	-0.2
2,086,578	+				-1.4
2,086,652	+				-3.2
2,086,652	+				-1.4
2,086,752	+				-2.2
2,086,752	+				-0.1
2,086,752	+				-3.0
2,086,752	+				-1.4
2,086,752	+				-0.8
2,086,755	+				-1.7
2,086,755	+				-2.2
2,086,755	+				-0.4
2,086,755	+				-1.0
2,086,755	+				-2.4
2,086,755	+				+0.6
2,086,756	-				-1.0
2,086,756	-				+2.2
2,086,756	-				+0.2
2,086,756	-				+0.4
2,086,756	-				+0.8
2,086,756	-				-1.2
2,086,756	-				-1.4
2,086,756	-				-1.2
2,086,756	-				-2.2
2,086,756	-				+1.4
2,086,761	+				-3.8
2,086,761	+				-0.7
2,086,761	+				+0.3
2,086,761	+				-1.4
2,086,762	-				-1.0
2,086,772	+				-1.1
2,086,810	+				-0.5
2,086,834	+				-2.0
2,086,835	-				-1.4
2,086,835	-				-1.4
2,086,838	+				-2.7
2,086,847	-				-2.0
2,086,916	+		HGI48_RS09670	0.12	+0.2
2,086,932	+		HGI48_RS09670	0.14	+0.9
2,087,109	-		HGI48_RS09670	0.35	-1.7
2,087,119	+		HGI48_RS09670	0.36	-1.8
2,087,119	+		HGI48_RS09670	0.36	+1.4
2,087,119	+		HGI48_RS09670	0.36	-0.7
2,087,119	+		HGI48_RS09670	0.36	+1.6
2,087,120	-		HGI48_RS09670	0.36	-0.2
2,087,220	+		HGI48_RS09670	0.48	-0.8
2,087,221	-		HGI48_RS09670	0.48	-1.4
2,087,221	-				-1.0
2,087,314	+		HGI48_RS09670	0.59	+0.4
2,087,315	-		HGI48_RS09670	0.59	-0.4
2,087,381	+		HGI48_RS09670	0.67	+1.1
2,087,381	+		HGI48_RS09670	0.67	-2.0
2,087,381	+				+0.6
2,087,382	-		HGI48_RS09670	0.67	-2.0
2,087,396	+		HGI48_RS09670	0.68	-1.4
2,087,396	+		HGI48_RS09670	0.68	+0.3
2,087,397	-		HGI48_RS09670	0.69	+0.6
2,087,472	-		HGI48_RS09670	0.77	+0.3
2,087,512	+		HGI48_RS09670	0.82	+0.4
2,087,513	-		HGI48_RS09670	0.82	-1.4
2,087,513	-		HGI48_RS09670	0.82	+0.2
2,087,591	+				-2.2
2,087,592	-				-1.4
2,087,593	+				-2.2
2,087,593	+				+1.8
2,087,594	-				+0.0
2,087,638	-				+2.0
2,087,638	-				-1.2
2,087,670	-				+0.0
2,087,691	+				-0.9
2,087,702	-				-1.4