Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS08025

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,723,454	+		HGI48_RS08020	0.33	+0.3
1,723,454	+		HGI48_RS08020	0.33	-1.5
1,723,455	-		HGI48_RS08020	0.33	-1.2
1,723,455	-		HGI48_RS08020	0.33	-1.8
1,723,487	+		HGI48_RS08020	0.35	+0.6
1,723,530	+		HGI48_RS08020	0.38	-1.5
1,723,569	-		HGI48_RS08020	0.41	-2.0
1,723,637	+		HGI48_RS08020	0.46	+1.4
1,723,637	+		HGI48_RS08020	0.46	-1.5
1,723,637	+		HGI48_RS08020	0.46	+1.1
1,723,638	-		HGI48_RS08020	0.46	-0.5
1,723,638	-		HGI48_RS08020	0.46	-1.5
1,723,638	-		HGI48_RS08020	0.46	-0.7
1,723,677	+		HGI48_RS08020	0.49	+1.6
1,723,677	+		HGI48_RS08020	0.49	+0.1
1,723,916	+		HGI48_RS08020	0.66	+0.8
1,723,917	-		HGI48_RS08020	0.67	+1.5
1,723,924	-		HGI48_RS08020	0.67	+1.4
1,723,943	+		HGI48_RS08020	0.68	-2.0
1,723,944	-		HGI48_RS08020	0.68	+0.8
1,723,944	-		HGI48_RS08020	0.68	+0.3
1,724,060	+				+2.9
1,724,102	+		HGI48_RS08020	0.80	-2.0
1,724,103	-		HGI48_RS08020	0.80	+0.6
1,724,163	-		HGI48_RS08020	0.85	-1.5
1,724,163	-				+2.2
1,724,167	+		HGI48_RS08020	0.85	-0.2
1,724,168	-		HGI48_RS08020	0.85	+0.6
1,724,223	-		HGI48_RS08020	0.89	-0.9
1,724,231	+		HGI48_RS08020	0.89	-0.2
1,724,396	+				+0.6
1,724,397	-				+0.5
1,724,412	+				-1.5
1,724,413	-				+0.1
1,724,413	-				-1.5
1,724,413	-				+2.5
1,724,499	+		HGI48_RS08025	0.11	+1.1
1,724,610	+		HGI48_RS08025	0.23	-0.0
1,724,610	+		HGI48_RS08025	0.23	+0.4
1,724,610	+		HGI48_RS08025	0.23	+1.4
1,724,610	+		HGI48_RS08025	0.23	+0.5
1,724,610	+		HGI48_RS08025	0.23	+1.3
1,724,613	+		HGI48_RS08025	0.23	-1.5
1,724,614	-		HGI48_RS08025	0.23	-1.2
1,724,614	-		HGI48_RS08025	0.23	+0.4
1,724,703	+		HGI48_RS08025	0.33	+0.8
1,724,880	+		HGI48_RS08025	0.52	+0.0
1,724,880	+		HGI48_RS08025	0.52	+0.9
1,724,881	-		HGI48_RS08025	0.52	-1.4
1,724,883	+		HGI48_RS08025	0.52	+0.4
1,724,883	+				+2.0
1,724,883	+		HGI48_RS08025	0.52	-1.8
1,724,883	+		HGI48_RS08025	0.52	-0.5
1,724,883	+		HGI48_RS08025	0.52	+0.8
1,724,884	-		HGI48_RS08025	0.52	+1.9
1,725,066	+		HGI48_RS08025	0.72	-0.2
1,725,066	+		HGI48_RS08025	0.72	-2.8
1,725,067	-		HGI48_RS08025	0.72	+0.6
1,725,067	-		HGI48_RS08025	0.72	+2.2
1,725,069	-		HGI48_RS08025	0.72	-1.2
1,725,391	+				+0.8
1,725,391	+				+0.3
1,725,392	-				-1.5
1,725,392	-				+2.7
1,725,397	-				-2.0
1,725,404	+				+1.4
1,725,412	-				-0.1
1,725,502	+				+0.5
1,725,503	-				+2.0
1,725,511	+				-1.5
1,725,512	-				-2.8
1,725,522	+				+1.2
1,725,523	-				+1.5
1,725,523	-				+3.6
1,725,544	-				-1.8
1,725,544	-				+0.5
1,725,571	+				-0.2
1,725,571	+				-0.2
1,725,571	+				+0.1
1,725,572	-				+1.2
1,725,572	-				-0.1
1,725,572	-				+2.2
1,725,572	-				+0.1
1,725,572	-				-1.2
1,725,572	-				-1.2
1,725,572	-				+0.4
1,725,573	+				-0.0
1,725,573	+				-1.5
1,725,574	-				+1.5
1,725,574	-				-0.8
1,725,583	-				+1.0
1,725,588	+				+2.8
1,725,588	+				+1.3
1,725,589	-				-1.4
1,725,589	-				+2.4
1,725,589	-				+1.8
1,725,637	-				+0.4
1,725,651	+				-0.5
1,725,652	-				-1.2
1,725,724	+				+1.0
1,725,724	+				-0.0
1,725,798	+		HGI48_RS08030	0.14	-1.5
1,725,798	+		HGI48_RS08030	0.14	+0.8
1,725,798	+		HGI48_RS08030	0.14	-0.8
1,725,799	-				+1.2
1,725,799	-				-0.2
1,725,799	-		HGI48_RS08030	0.14	-0.2
1,725,931	+		HGI48_RS08030	0.23	-0.5
1,725,931	+		HGI48_RS08030	0.23	+0.8
1,725,985	+		HGI48_RS08030	0.26	+0.8
1,725,985	+		HGI48_RS08030	0.26	-0.7
1,725,985	+		HGI48_RS08030	0.26	-3.7
1,725,985	+		HGI48_RS08030	0.26	-1.5
1,725,986	-		HGI48_RS08030	0.26	-1.6
1,725,986	-		HGI48_RS08030	0.26	+0.4
1,725,987	+		HGI48_RS08030	0.26	+0.1
1,725,991	+		HGI48_RS08030	0.27	-0.4
1,725,991	+		HGI48_RS08030	0.27	-2.2
1,725,991	+		HGI48_RS08030	0.27	+1.0
1,725,992	-				-0.8
1,725,992	-				+0.2
1,725,992	-		HGI48_RS08030	0.27	-1.2
1,725,993	+		HGI48_RS08030	0.27	-1.2
1,725,993	+		HGI48_RS08030	0.27	-1.2
1,725,994	-		HGI48_RS08030	0.27	+1.4
1,725,994	-				-0.8
1,725,994	-		HGI48_RS08030	0.27	-2.0
1,725,994	-		HGI48_RS08030	0.27	+0.9
1,725,994	-		HGI48_RS08030	0.27	-3.0
1,726,012	+		HGI48_RS08030	0.28	-1.4
1,726,035	+				-0.8
1,726,036	-				-0.8
1,726,036	-		HGI48_RS08030	0.30	+0.2
1,726,038	+		HGI48_RS08030	0.30	-0.2
1,726,039	-		HGI48_RS08030	0.30	-0.8
1,726,049	+		HGI48_RS08030	0.30	+1.2
1,726,050	-		HGI48_RS08030	0.31	-1.0
1,726,050	-		HGI48_RS08030	0.31	-0.4
1,726,093	-		HGI48_RS08030	0.33	-2.4
1,726,167	+		HGI48_RS08030	0.38	-0.2
1,726,168	-		HGI48_RS08030	0.38	-1.8
1,726,168	-		HGI48_RS08030	0.38	-1.2
1,726,168	-		HGI48_RS08030	0.38	+2.0
1,726,171	+		HGI48_RS08030	0.38	+1.9
1,726,172	-		HGI48_RS08030	0.38	+1.5
1,726,172	-		HGI48_RS08030	0.38	+0.6
1,726,172	-		HGI48_RS08030	0.38	+0.2
1,726,179	+		HGI48_RS08030	0.39	+0.8
1,726,192	+		HGI48_RS08030	0.40	-1.2
1,726,207	+		HGI48_RS08030	0.41	-1.8
1,726,207	+				+3.0
1,726,276	+		HGI48_RS08030	0.45	-0.2
1,726,277	-		HGI48_RS08030	0.45	+0.5
1,726,278	+		HGI48_RS08030	0.45	-2.0
1,726,278	+		HGI48_RS08030	0.45	-0.8
1,726,278	+		HGI48_RS08030	0.45	+0.8
1,726,278	+		HGI48_RS08030	0.45	+1.7
1,726,278	+		HGI48_RS08030	0.45	-0.3
1,726,279	-		HGI48_RS08030	0.45	+1.2
1,726,279	-				+0.2
1,726,279	-		HGI48_RS08030	0.45	-1.2
1,726,282	-		HGI48_RS08030	0.45	+1.4
1,726,284	+		HGI48_RS08030	0.46	-2.0
1,726,285	-		HGI48_RS08030	0.46	+1.4