Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS07890

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,686,672	+		HGI48_RS07885	0.46	+0.5
1,686,672	+		HGI48_RS07885	0.46	+0.8
1,686,672	+		HGI48_RS07885	0.46	-1.5
1,686,672	+				-0.2
1,686,673	-		HGI48_RS07885	0.46	-2.2
1,686,729	+		HGI48_RS07885	0.52	+0.6
1,686,730	-		HGI48_RS07885	0.53	-1.2
1,686,783	+		HGI48_RS07885	0.58	-0.0
1,686,952	-		HGI48_RS07885	0.77	+0.0
1,687,033	+		HGI48_RS07885	0.86	+0.4
1,687,039	+		HGI48_RS07885	0.86	+0.0
1,687,040	-		HGI48_RS07885	0.86	-0.2
1,687,177	-				+0.1
1,687,198	+				-1.5
1,687,199	-				+0.3
1,687,199	-				+1.3
1,687,228	+				+2.0
1,687,250	+				+0.1
1,687,251	-				+0.9
1,687,251	-				+0.4
1,687,251	-				-1.8
1,687,251	-				-0.0
1,687,251	-				-0.2
1,687,263	+				-1.2
1,687,263	+				+0.5
1,687,264	-				-0.2
1,687,264	-				-0.3
1,687,280	+				+1.8
1,687,293	+				+0.6
1,687,319	-				+0.4
1,687,338	+				-0.7
1,687,366	+				+0.8
1,687,366	+				+1.1
1,687,366	+				-0.8
1,687,366	+				+1.1
1,687,366	+				+0.5
1,687,366	+				+0.9
1,687,367	-				-1.2
1,687,367	-				-2.8
1,687,367	-				+0.2
1,687,367	-				-1.8
1,687,372	+				-0.4
1,687,462	+				+1.2
1,687,493	+				+0.2
1,687,493	+				-0.1
1,687,494	-				-0.2
1,687,494	-				+1.4
1,687,494	-				-1.2
1,687,540	+				-1.5
1,687,544	+				-0.8
1,687,544	+				+0.6
1,687,545	-				-1.8
1,687,640	-				+0.0
1,687,640	-				+0.4
1,687,640	-				+0.3
1,687,681	+				-0.8
1,687,681	+				+0.0
1,687,681	+				-2.2
1,687,681	+				+0.8
1,687,681	+				+1.8
1,687,681	+				+2.0
1,687,681	+				+0.2
1,687,681	+				-0.7
1,687,681	+				+4.9
1,687,682	-				-2.7
1,687,682	-				+0.8
1,687,894	+				+0.2
1,687,894	+				+3.0
1,687,894	+		HGI48_RS07890	0.22	-1.5
1,687,894	+		HGI48_RS07890	0.22	-2.2
1,687,895	-		HGI48_RS07890	0.22	-0.4
1,687,895	-		HGI48_RS07890	0.22	+0.2
1,688,072	-				-0.8
1,688,160	+		HGI48_RS07890	0.45	-2.4
1,688,161	-		HGI48_RS07890	0.46	+0.9
1,688,161	-		HGI48_RS07890	0.46	-2.4
1,688,176	+		HGI48_RS07890	0.47	+0.7
1,688,176	+		HGI48_RS07890	0.47	-0.8
1,688,176	+		HGI48_RS07890	0.47	+0.2
1,688,176	+		HGI48_RS07890	0.47	+0.5
1,688,177	-		HGI48_RS07890	0.47	-0.2
1,688,177	-				+1.5
1,688,215	+		HGI48_RS07890	0.50	-2.0
1,688,215	+				-0.8
1,688,224	+		HGI48_RS07890	0.51	+0.5
1,688,224	+		HGI48_RS07890	0.51	-0.3
1,688,224	+		HGI48_RS07890	0.51	-0.5
1,688,225	-		HGI48_RS07890	0.51	-2.5
1,688,225	-		HGI48_RS07890	0.51	+1.1
1,688,225	-				+2.0
1,688,225	-		HGI48_RS07890	0.51	+0.4
1,688,225	-		HGI48_RS07890	0.51	-1.2
1,688,675	-				-2.4
1,688,787	-				-0.2
1,688,789	+				-0.4
1,688,789	+				-2.7
1,688,789	+				-2.4
1,688,789	+				+0.3
1,688,789	+				-0.8
1,688,789	+				+0.2
1,688,789	+				-1.5
1,688,790	-				+0.9
1,688,790	-				-1.2
1,688,790	-				-0.5
1,688,790	-				+0.8
1,688,790	-				-1.5
1,688,790	-				-0.8
1,688,790	-				-0.9
1,688,790	-				+0.8
1,688,790	-				+0.8
1,688,790	-				+0.4
1,688,790	-				+1.6
1,688,790	-				+1.7
1,688,790	-				+1.8
1,688,861	+				-0.6
1,688,861	+				+0.5
1,688,861	+				+1.5
1,688,862	-				-1.1
1,688,862	-				+0.1
1,688,862	-				+0.8
1,688,863	+				+0.8
1,688,863	+				-0.5
1,688,864	-				-1.5
1,688,864	-				+0.9
1,688,891	+				+1.5
1,688,892	-				-2.0
1,688,892	-				-1.2
1,688,911	-				-0.3
1,688,970	+				-1.5
1,688,978	+				+1.9
1,688,978	+				+0.1
1,688,979	-				+0.3
1,689,047	+				-2.2
1,689,245	+		HGI48_RS07895	0.53	-0.0
1,689,245	+		HGI48_RS07895	0.53	-1.5
1,689,245	+		HGI48_RS07895	0.53	-1.1
1,689,245	+		HGI48_RS07895	0.53	-0.5
1,689,245	+		HGI48_RS07895	0.53	-2.5
1,689,246	-		HGI48_RS07895	0.53	+0.1
1,689,246	-		HGI48_RS07895	0.53	+0.4
1,689,246	-		HGI48_RS07895	0.53	-2.2
1,689,246	-		HGI48_RS07895	0.53	-1.8
1,689,322	-		HGI48_RS07895	0.78	+0.8
1,689,322	-		HGI48_RS07895	0.78	+0.5
1,689,327	+		HGI48_RS07895	0.80	-0.7
1,689,327	+		HGI48_RS07895	0.80	-0.8
1,689,327	+		HGI48_RS07895	0.80	-1.8
1,689,327	+		HGI48_RS07895	0.80	+1.4
1,689,328	-		HGI48_RS07895	0.80	+1.8
1,689,328	-		HGI48_RS07895	0.80	-1.8
1,689,328	-		HGI48_RS07895	0.80	-1.2
1,689,328	-		HGI48_RS07895	0.80	-0.1
1,689,328	-		HGI48_RS07895	0.80	-1.2
1,689,328	-				+1.4
1,689,329	+		HGI48_RS07895	0.80	-1.2
1,689,329	+		HGI48_RS07895	0.80	+1.9
1,689,329	+		HGI48_RS07895	0.80	+0.3
1,689,330	-		HGI48_RS07895	0.81	-2.2
1,689,502	+		HGI48_RS07900	0.28	-1.5
1,689,502	+		HGI48_RS07900	0.28	-0.4
1,689,502	+		HGI48_RS07900	0.28	-2.9
1,689,502	+		HGI48_RS07900	0.28	-1.8
1,689,503	-				+2.1
1,689,579	+				+2.8
1,689,579	+		HGI48_RS07900	0.46	+0.3
1,689,579	+		HGI48_RS07900	0.46	-0.6
1,689,579	+		HGI48_RS07900	0.46	+0.8
1,689,579	+		HGI48_RS07900	0.46	-2.2
1,689,579	+		HGI48_RS07900	0.46	+0.4
1,689,579	+		HGI48_RS07900	0.46	-2.4
1,689,579	+		HGI48_RS07900	0.46	-1.5
1,689,579	+		HGI48_RS07900	0.46	-2.5
1,689,580	-		HGI48_RS07900	0.46	-1.2
1,689,580	-		HGI48_RS07900	0.46	+0.7
1,689,580	-		HGI48_RS07900	0.46	-0.5
1,689,580	-		HGI48_RS07900	0.46	+0.5
1,689,580	-		HGI48_RS07900	0.46	-2.0
1,689,580	-		HGI48_RS07900	0.46	-2.8
1,689,580	-				-0.8
1,689,580	-		HGI48_RS07900	0.46	+1.4
1,689,580	-		HGI48_RS07900	0.46	+0.8
1,689,580	-		HGI48_RS07900	0.46	-3.5
1,689,603	+		HGI48_RS07900	0.52	-0.3
1,689,739	-		HGI48_RS07900	0.84	-1.2
1,689,739	-		HGI48_RS07900	0.84	+0.1
1,689,768	-				-1.5
1,689,780	+				-2.4
1,689,781	-				+0.8