Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS07015

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,487,860	+		HGI48_RS07010	0.25	+1.0
1,487,860	+		HGI48_RS07010	0.25	-0.3
1,487,861	-		HGI48_RS07010	0.25	+0.4
1,487,861	-		HGI48_RS07010	0.25	+0.1
1,487,898	-		HGI48_RS07010	0.28	-1.7
1,487,898	-		HGI48_RS07010	0.28	+1.8
1,487,898	-		HGI48_RS07010	0.28	-2.0
1,487,928	+		HGI48_RS07010	0.31	+1.2
1,487,929	-		HGI48_RS07010	0.31	-0.7
1,487,983	-		HGI48_RS07010	0.36	-1.3
1,487,983	-		HGI48_RS07010	0.36	-0.6
1,487,983	-		HGI48_RS07010	0.36	-0.5
1,488,020	-		HGI48_RS07010	0.39	+1.1
1,488,063	+		HGI48_RS07010	0.43	+0.3
1,488,205	+		HGI48_RS07010	0.56	-1.2
1,488,206	-		HGI48_RS07010	0.56	-1.2
1,488,206	-		HGI48_RS07010	0.56	-2.6
1,488,250	-		HGI48_RS07010	0.60	-2.2
1,488,250	-				-0.7
1,488,260	+		HGI48_RS07010	0.61	-1.7
1,488,334	+				+1.3
1,488,338	-		HGI48_RS07010	0.68	+0.8
1,488,345	-		HGI48_RS07010	0.68	+0.0
1,488,345	-		HGI48_RS07010	0.68	-1.2
1,488,434	-		HGI48_RS07010	0.76	+1.8
1,488,434	-		HGI48_RS07010	0.76	-0.2
1,488,455	+		HGI48_RS07010	0.78	-0.4
1,488,456	-		HGI48_RS07010	0.78	+0.6
1,488,543	-		HGI48_RS07010	0.86	-1.4
1,488,557	+		HGI48_RS07010	0.87	-2.0
1,488,558	-				+0.8
1,488,558	-		HGI48_RS07010	0.87	+0.6
1,488,580	-		HGI48_RS07010	0.89	+0.1
1,488,580	-		HGI48_RS07010	0.89	+0.1
1,488,691	+				+0.8
1,488,691	+				-0.6
1,488,691	+				+0.8
1,488,691	+				-0.4
1,488,691	+				+0.8
1,488,692	-				+2.4
1,488,692	-				+1.3
1,488,692	-				+0.8
1,488,692	-				-0.7
1,488,693	+				+1.7
1,488,693	+				-1.5
1,488,693	+				+1.7
1,488,693	+				+0.8
1,488,693	+				+0.3
1,488,744	-				-1.5
1,488,900	+		HGI48_RS07015	0.19	+0.8
1,488,903	+		HGI48_RS07015	0.19	+0.3
1,489,069	+		HGI48_RS07015	0.34	-1.7
1,489,069	+		HGI48_RS07015	0.34	-2.0
1,489,069	+		HGI48_RS07015	0.34	-2.5
1,489,069	+		HGI48_RS07015	0.34	-1.5
1,489,069	+		HGI48_RS07015	0.34	-1.7
1,489,069	+		HGI48_RS07015	0.34	+0.1
1,489,070	-		HGI48_RS07015	0.34	-0.2
1,489,070	-		HGI48_RS07015	0.34	+1.4
1,489,070	-		HGI48_RS07015	0.34	+0.5
1,489,070	-		HGI48_RS07015	0.34	+0.1
1,489,070	-		HGI48_RS07015	0.34	-2.2
1,489,070	-		HGI48_RS07015	0.34	+1.9
1,489,070	-		HGI48_RS07015	0.34	+1.0
1,489,114	+				+2.4
1,489,114	+		HGI48_RS07015	0.38	-0.1
1,489,114	+		HGI48_RS07015	0.38	-1.5
1,489,114	+		HGI48_RS07015	0.38	+0.3
1,489,114	+		HGI48_RS07015	0.38	-1.7
1,489,114	+		HGI48_RS07015	0.38	-2.2
1,489,114	+		HGI48_RS07015	0.38	+0.7
1,489,115	-		HGI48_RS07015	0.38	+0.1
1,489,115	-		HGI48_RS07015	0.38	-1.2
1,489,115	-				-0.7
1,489,115	-		HGI48_RS07015	0.38	-2.0
1,489,115	-		HGI48_RS07015	0.38	-2.3
1,489,193	+		HGI48_RS07015	0.45	-0.2
1,489,213	-		HGI48_RS07015	0.47	+0.2
1,489,291	+		HGI48_RS07015	0.54	+0.4
1,489,291	+		HGI48_RS07015	0.54	+0.8
1,489,292	-		HGI48_RS07015	0.54	-0.6
1,489,292	-		HGI48_RS07015	0.54	+2.7
1,489,348	+		HGI48_RS07015	0.59	+0.3
1,489,348	+		HGI48_RS07015	0.59	+1.5
1,489,349	-		HGI48_RS07015	0.59	-1.2
1,489,349	-		HGI48_RS07015	0.59	-2.2
1,489,349	-		HGI48_RS07015	0.59	+0.4
1,489,349	-				+0.8
1,489,350	+		HGI48_RS07015	0.60	+0.1
1,489,350	+		HGI48_RS07015	0.60	-0.1
1,489,350	+				+0.8
1,489,350	+		HGI48_RS07015	0.60	+1.4
1,489,350	+		HGI48_RS07015	0.60	-0.2
1,489,350	+		HGI48_RS07015	0.60	+0.6
1,489,351	-		HGI48_RS07015	0.60	-1.5
1,489,351	-		HGI48_RS07015	0.60	+0.0
1,489,351	-		HGI48_RS07015	0.60	+2.7
1,489,351	-		HGI48_RS07015	0.60	+1.1
1,489,351	-		HGI48_RS07015	0.60	-2.0
1,489,351	-		HGI48_RS07015	0.60	-2.2
1,489,351	-		HGI48_RS07015	0.60	-0.2
1,489,351	-		HGI48_RS07015	0.60	-0.1
1,489,351	-		HGI48_RS07015	0.60	-1.5
1,489,351	-		HGI48_RS07015	0.60	-1.2
1,489,351	-		HGI48_RS07015	0.60	+2.2
1,489,400	-		HGI48_RS07015	0.64	+0.2
1,489,401	+		HGI48_RS07015	0.64	+0.3
1,489,443	-		HGI48_RS07015	0.68	-0.1
1,489,561	+		HGI48_RS07015	0.79	-2.2
1,489,588	+		HGI48_RS07015	0.81	+0.2
1,489,588	+		HGI48_RS07015	0.81	+1.7
1,489,588	+		HGI48_RS07015	0.81	-1.0
1,489,589	-				-0.7
1,489,589	-		HGI48_RS07015	0.81	-1.7
1,489,688	+				+0.4
1,489,688	+				-1.7
1,489,712	-				-1.5
1,489,712	-				-2.3
1,489,742	+				+0.8
1,489,743	-				-1.2
1,489,763	+				-2.3
1,489,763	+				+0.8
1,489,792	+				-1.7
1,489,793	-				+0.8
1,489,793	-				+0.6
1,489,825	+				-2.0
1,489,825	+				-1.5
1,489,825	+				-0.2
1,489,825	+				+0.8
1,489,826	-				-1.5
1,489,826	-				-1.7
1,489,826	-				+0.3
1,489,911	+		HGI48_RS07020	0.12	+1.3
1,489,912	-		HGI48_RS07020	0.13	+1.8
1,489,931	+		HGI48_RS07020	0.14	-0.7
1,489,932	-		HGI48_RS07020	0.15	+1.1
1,489,932	-		HGI48_RS07020	0.15	+0.4
1,489,934	+		HGI48_RS07020	0.15	-1.5
1,489,934	+		HGI48_RS07020	0.15	-1.7
1,489,935	-		HGI48_RS07020	0.15	+1.6
1,489,935	-		HGI48_RS07020	0.15	+0.5
1,489,935	-		HGI48_RS07020	0.15	-0.2
1,489,935	-		HGI48_RS07020	0.15	-0.9
1,489,982	+		HGI48_RS07020	0.19	-0.2
1,489,983	-		HGI48_RS07020	0.20	+0.4
1,490,014	-		HGI48_RS07020	0.23	+0.5
1,490,050	+				-0.7
1,490,050	+		HGI48_RS07020	0.26	-1.5
1,490,061	+		HGI48_RS07020	0.27	+0.2
1,490,062	-		HGI48_RS07020	0.27	-1.5
1,490,153	-		HGI48_RS07020	0.36	-0.0
1,490,257	+		HGI48_RS07020	0.46	+0.4
1,490,272	+		HGI48_RS07020	0.48	-2.3
1,490,465	-		HGI48_RS07020	0.67	+0.2
1,490,475	-		HGI48_RS07020	0.68	-0.3
1,490,475	-		HGI48_RS07020	0.68	+0.4
1,490,477	+		HGI48_RS07020	0.68	+0.6
1,490,624	+		HGI48_RS07020	0.82	+0.2
1,490,649	-		HGI48_RS07020	0.85	+0.8
1,490,661	-		HGI48_RS07020	0.86	+0.1
1,490,672	+				-0.7
1,490,673	-		HGI48_RS07020	0.87	-1.0
1,490,673	-		HGI48_RS07020	0.87	+0.0
1,490,732	-				+2.3
1,490,768	+				-0.8