Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS05050

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,058,012	+		HGI48_RS05045	0.64	+0.7
1,058,012	+		HGI48_RS05045	0.64	+0.2
1,058,012	+		HGI48_RS05045	0.64	-0.0
1,058,012	+		HGI48_RS05045	0.64	-1.6
1,058,146	+				-0.0
1,058,146	+		HGI48_RS05045	0.75	+0.7
1,058,147	-		HGI48_RS05045	0.75	+0.6
1,058,320	+				-0.6
1,058,320	+		HGI48_RS05045	0.89	+1.5
1,058,320	+				+2.0
1,058,321	-		HGI48_RS05045	0.89	-0.0
1,058,321	-		HGI48_RS05045	0.89	+0.3
1,058,323	+				-0.6
1,058,323	+		HGI48_RS05045	0.90	-1.6
1,058,323	+		HGI48_RS05045	0.90	+1.4
1,058,324	-		HGI48_RS05045	0.90	+0.3
1,058,503	+				+0.7
1,058,504	-				+1.3
1,058,539	+				-1.6
1,058,553	+				+0.5
1,058,553	+				+1.9
1,058,554	-				-1.3
1,058,554	-				+1.0
1,058,554	-				-1.0
1,058,558	+				-2.5
1,058,558	+				+0.7
1,058,558	+				-1.8
1,058,559	-				-1.3
1,058,559	-				-0.1
1,058,598	+				-0.0
1,058,600	-				+1.5
1,058,654	-				-0.6
1,058,654	-				+0.8
1,058,666	+				+0.5
1,058,666	+				-1.6
1,058,666	+				+2.0
1,058,666	+				-0.1
1,058,666	+				-2.3
1,058,666	+				-1.6
1,058,667	-				-0.0
1,058,667	-				+0.1
1,058,667	-				-0.6
1,058,672	+				+2.7
1,058,690	-				+0.2
1,058,721	+				-1.3
1,058,729	+				-2.0
1,058,729	+				-0.0
1,058,816	+				+0.7
1,058,816	+				-1.3
1,058,816	+				-0.6
1,058,816	+				+0.8
1,058,816	+				-1.6
1,058,816	+				+1.6
1,058,817	-				+1.0
1,058,817	-				-0.3
1,058,817	-				+0.6
1,058,817	-				-0.2
1,058,817	-				-2.0
1,058,818	+				-0.9
1,058,818	+				-0.0
1,058,818	+				+0.3
1,058,818	+				+2.3
1,058,819	-				-0.0
1,058,819	-				+0.3
1,058,819	-				-1.0
1,058,819	-				-0.9
1,058,819	-				+0.7
1,058,819	-				+1.0
1,058,819	-				-0.6
1,058,819	-				+0.6
1,058,819	-				+0.3
1,058,819	-				+0.4
1,058,819	-				-0.3
1,058,822	+				+0.4
1,058,822	+				-2.6
1,058,822	+				+1.2
1,058,822	+				+1.3
1,058,822	+				-1.6
1,058,822	+				+0.4
1,058,822	+				-2.0
1,058,822	+				+1.8
1,058,823	-				+0.2
1,058,852	+				+0.3
1,058,853	-				-1.0
1,058,853	-				-1.2
1,058,892	+				-2.7
1,059,137	+				-0.0
1,059,138	-		HGI48_RS05050	0.22	+0.1
1,059,188	-		HGI48_RS05050	0.28	-1.0
1,059,423	-				+1.7
1,059,493	-		HGI48_RS05050	0.60	-2.0
1,059,499	+		HGI48_RS05050	0.61	+0.6
1,059,499	+		HGI48_RS05050	0.61	+0.2
1,059,499	+		HGI48_RS05050	0.61	-1.0
1,059,499	+		HGI48_RS05050	0.61	+1.2
1,059,499	+				+3.3
1,059,499	+		HGI48_RS05050	0.61	+0.4
1,059,499	+				-0.0
1,059,499	+		HGI48_RS05050	0.61	+0.2
1,059,499	+		HGI48_RS05050	0.61	-1.8
1,059,499	+		HGI48_RS05050	0.61	+1.0
1,059,539	+		HGI48_RS05050	0.65	-1.3
1,059,540	-		HGI48_RS05050	0.65	-1.2
1,059,568	+		HGI48_RS05050	0.69	+0.8
1,059,569	-		HGI48_RS05050	0.69	-1.8
1,059,774	+				-1.0
1,059,774	+				-1.3
1,059,874	+				+1.4
1,059,941	+				-0.6
1,059,942	-				+2.3
1,059,990	+				+0.4
1,059,990	+				-1.5
1,059,990	+				+0.5
1,059,990	+				-1.6
1,059,990	+				-2.0
1,059,990	+				-2.3
1,059,990	+				-1.9
1,059,990	+				+1.4
1,059,990	+				+0.4
1,059,990	+				+1.8
1,059,990	+				-1.0
1,059,990	+				+1.0
1,059,991	-				-0.6
1,059,991	-				-0.1
1,059,991	-				-0.2
1,059,991	-				+1.6
1,059,991	-				-1.8
1,059,991	-				+0.3
1,059,991	-				-0.0
1,059,999	+				+1.8
1,059,999	+				-2.3
1,060,056	+		HGI48_RS05055	0.12	-0.8
1,060,056	+				-0.6
1,060,056	+		HGI48_RS05055	0.12	-0.2
1,060,056	+		HGI48_RS05055	0.12	-1.0
1,060,056	+		HGI48_RS05055	0.12	+2.2
1,060,057	-		HGI48_RS05055	0.12	-1.7
1,060,057	-		HGI48_RS05055	0.12	-1.6
1,060,057	-		HGI48_RS05055	0.12	-1.0
1,060,057	-		HGI48_RS05055	0.12	-1.6
1,060,058	+				+2.0
1,060,058	+		HGI48_RS05055	0.12	+0.1
1,060,058	+		HGI48_RS05055	0.12	-0.8
1,060,058	+		HGI48_RS05055	0.12	+0.6
1,060,058	+				-0.6
1,060,059	-		HGI48_RS05055	0.13	-2.0
1,060,059	-		HGI48_RS05055	0.13	+0.3
1,060,059	-		HGI48_RS05055	0.13	-1.6
1,060,059	-		HGI48_RS05055	0.13	+1.8
1,060,059	-		HGI48_RS05055	0.13	-1.6
1,060,059	-		HGI48_RS05055	0.13	-2.6
1,060,059	-		HGI48_RS05055	0.13	-0.1
1,060,059	-		HGI48_RS05055	0.13	+1.4
1,060,059	-		HGI48_RS05055	0.13	-1.1
1,060,059	-				+1.0
1,060,097	-		HGI48_RS05055	0.22	+1.7
1,060,132	+		HGI48_RS05055	0.32	-1.3
1,060,146	-		HGI48_RS05055	0.35	-1.3
1,060,217	+		HGI48_RS05055	0.53	+1.0
1,060,218	-		HGI48_RS05055	0.54	-0.5
1,060,246	+		HGI48_RS05055	0.61	+2.8
1,060,271	+		HGI48_RS05055	0.67	+0.3
1,060,299	+		HGI48_RS05055	0.75	+2.0
1,060,299	+		HGI48_RS05055	0.75	+1.3
1,060,299	+		HGI48_RS05055	0.75	-1.6
1,060,300	-		HGI48_RS05055	0.75	-0.1
1,060,305	+		HGI48_RS05055	0.76	+1.8
1,060,305	+		HGI48_RS05055	0.76	+0.5
1,060,306	-		HGI48_RS05055	0.76	+0.7
1,060,306	-		HGI48_RS05055	0.76	-1.0
1,060,306	-		HGI48_RS05055	0.76	+0.2
1,060,360	-				+0.7
1,060,372	-				-0.0
1,060,372	-				-1.3
1,060,394	+				-1.8
1,060,394	+				+1.9
1,060,394	+				-1.8
1,060,394	+				+1.5
1,060,394	+				-2.3
1,060,403	+				+0.4
1,060,403	+				+2.4
1,060,403	+				-1.3
1,060,403	+				-0.3
1,060,457	+				-0.6
1,060,476	+				+2.3
1,060,476	+				+1.4
1,060,477	-				+0.6
1,060,477	-				-1.6
1,060,478	+				-2.2
1,060,479	-				-0.7
1,060,518	+		HGI48_RS05060	0.11	-3.8
1,060,536	+		HGI48_RS05060	0.13	+1.0
1,060,536	+		HGI48_RS05060	0.13	+2.3
1,060,537	-		HGI48_RS05060	0.13	-1.8
1,060,537	-		HGI48_RS05060	0.13	+1.7
1,060,854	-		HGI48_RS05060	0.41	+0.7