Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS04995

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,045,877	+				-0.6
1,045,878	-				-1.0
1,045,878	-				+2.7
1,045,878	-				-0.5
1,045,886	+				-1.8
1,045,886	+				+1.0
1,045,887	-				-2.0
1,045,916	+		HGI48_RS04985	0.15	-2.5
1,045,917	-		HGI48_RS04985	0.15	-1.8
1,045,931	+		HGI48_RS04985	0.18	+1.2
1,045,931	+		HGI48_RS04985	0.18	+0.5
1,045,931	+				-0.0
1,045,931	+		HGI48_RS04985	0.18	-2.9
1,045,931	+		HGI48_RS04985	0.18	-1.9
1,046,179	+		HGI48_RS04985	0.74	-1.6
1,046,179	+		HGI48_RS04985	0.74	+0.0
1,046,180	-		HGI48_RS04985	0.74	+0.8
1,046,180	-		HGI48_RS04985	0.74	+1.0
1,046,180	-		HGI48_RS04985	0.74	+2.1
1,046,180	-		HGI48_RS04985	0.74	+0.9
1,046,180	-		HGI48_RS04985	0.74	-2.7
1,046,180	-		HGI48_RS04985	0.74	-0.2
1,046,180	-		HGI48_RS04985	0.74	+0.4
1,046,180	-		HGI48_RS04985	0.74	-2.2
1,046,383	-		HGI48_RS04990	0.30	+2.2
1,046,390	+				+1.7
1,046,401	-		HGI48_RS04990	0.35	+1.0
1,046,663	+				+0.8
1,046,664	-				-0.8
1,046,674	-				+1.1
1,046,683	+				+0.7
1,046,683	+				+2.8
1,046,683	+				-2.3
1,046,684	-				-2.7
1,046,684	-				+1.5
1,046,684	-				-2.0
1,046,719	+				+0.6
1,046,719	+				-1.3
1,046,719	+				-1.3
1,046,719	+				-1.0
1,046,720	-				-0.6
1,046,831	+				+0.7
1,046,831	+				+0.3
1,046,857	+				-2.8
1,046,868	+				-1.8
1,046,868	+				-1.8
1,046,868	+				+0.6
1,046,868	+				+0.4
1,046,869	-				-0.1
1,046,869	-				+2.4
1,046,869	-				+1.0
1,046,966	+				+0.4
1,047,198	+				+2.2
1,047,252	+		HGI48_RS04995	0.19	+0.4
1,047,252	+		HGI48_RS04995	0.19	-1.8
1,047,366	-		HGI48_RS04995	0.23	+0.7
1,047,374	+		HGI48_RS04995	0.23	+0.8
1,047,374	+		HGI48_RS04995	0.23	-2.0
1,047,374	+		HGI48_RS04995	0.23	+2.0
1,047,377	+		HGI48_RS04995	0.23	-1.7
1,047,378	-		HGI48_RS04995	0.23	-1.3
1,047,469	+				+1.0
1,047,470	-		HGI48_RS04995	0.26	+2.4
1,047,470	-		HGI48_RS04995	0.26	-1.3
1,047,487	-		HGI48_RS04995	0.27	+1.3
1,047,542	+		HGI48_RS04995	0.29	-1.3
1,047,542	+		HGI48_RS04995	0.29	+0.2
1,047,542	+		HGI48_RS04995	0.29	-2.3
1,047,542	+		HGI48_RS04995	0.29	+1.7
1,047,542	+		HGI48_RS04995	0.29	-0.7
1,047,542	+		HGI48_RS04995	0.29	-0.7
1,047,542	+				+1.4
1,047,542	+		HGI48_RS04995	0.29	-1.8
1,047,542	+		HGI48_RS04995	0.29	+1.3
1,047,543	-		HGI48_RS04995	0.29	-0.1
1,047,543	-		HGI48_RS04995	0.29	+1.1
1,047,543	-		HGI48_RS04995	0.29	-2.0
1,047,543	-				+2.0
1,047,543	-		HGI48_RS04995	0.29	-1.3
1,047,543	-		HGI48_RS04995	0.29	+2.2
1,047,629	+				-0.6
1,047,629	+		HGI48_RS04995	0.32	-2.0
1,047,629	+		HGI48_RS04995	0.32	-1.3
1,047,629	+		HGI48_RS04995	0.32	+0.1
1,047,629	+		HGI48_RS04995	0.32	+1.4
1,047,629	+		HGI48_RS04995	0.32	-0.0
1,047,629	+		HGI48_RS04995	0.32	-1.0
1,047,629	+				-0.0
1,047,629	+		HGI48_RS04995	0.32	+0.4
1,047,629	+		HGI48_RS04995	0.32	-0.6
1,047,630	-		HGI48_RS04995	0.32	+2.2
1,047,630	-		HGI48_RS04995	0.32	+1.7
1,047,630	-		HGI48_RS04995	0.32	+0.1
1,047,630	-		HGI48_RS04995	0.32	-1.0
1,047,630	-		HGI48_RS04995	0.32	-1.3
1,047,630	-		HGI48_RS04995	0.32	-0.4
1,047,630	-		HGI48_RS04995	0.32	+2.1
1,047,630	-		HGI48_RS04995	0.32	-2.7
1,047,630	-		HGI48_RS04995	0.32	+1.9
1,047,639	-		HGI48_RS04995	0.32	+1.3
1,047,639	-		HGI48_RS04995	0.32	-1.7
1,047,824	+		HGI48_RS04995	0.39	-1.0
1,047,825	-		HGI48_RS04995	0.39	-1.0
1,047,863	+		HGI48_RS04995	0.40	+0.8
1,047,916	+		HGI48_RS04995	0.42	+0.6
1,047,917	-				+1.4
1,047,932	+		HGI48_RS04995	0.42	+1.3
1,047,932	+		HGI48_RS04995	0.42	-1.3
1,047,932	+		HGI48_RS04995	0.42	-2.6
1,047,932	+		HGI48_RS04995	0.42	+0.3
1,047,933	-		HGI48_RS04995	0.42	-2.3
1,047,933	-		HGI48_RS04995	0.42	+0.2
1,047,977	+		HGI48_RS04995	0.44	+0.3
1,047,977	+		HGI48_RS04995	0.44	-1.1
1,047,978	-		HGI48_RS04995	0.44	+0.5
1,047,978	-				+2.0
1,047,978	-		HGI48_RS04995	0.44	+1.3
1,048,078	-		HGI48_RS04995	0.47	+0.4
1,048,099	+		HGI48_RS04995	0.48	+1.3
1,048,109	+		HGI48_RS04995	0.48	+1.0
1,048,109	+				-0.6
1,048,110	-		HGI48_RS04995	0.48	-0.2
1,048,110	-		HGI48_RS04995	0.48	-0.1
1,048,110	-				-0.6
1,048,134	+		HGI48_RS04995	0.49	+0.3
1,048,135	-		HGI48_RS04995	0.49	-1.6
1,048,217	+		HGI48_RS04995	0.52	+3.3
1,048,217	+		HGI48_RS04995	0.52	-1.0
1,048,218	-				-0.6
1,048,218	-		HGI48_RS04995	0.52	-1.3
1,048,218	-		HGI48_RS04995	0.52	-1.6
1,048,219	+		HGI48_RS04995	0.52	+1.0
1,048,220	-		HGI48_RS04995	0.52	-1.3
1,048,220	-		HGI48_RS04995	0.52	-0.6
1,048,220	-		HGI48_RS04995	0.52	-1.6
1,048,285	+		HGI48_RS04995	0.55	+1.2
1,048,285	+		HGI48_RS04995	0.55	-2.5
1,048,285	+		HGI48_RS04995	0.55	-0.1
1,048,307	+		HGI48_RS04995	0.55	+1.0
1,048,307	+		HGI48_RS04995	0.55	+0.4
1,048,307	+		HGI48_RS04995	0.55	-0.6
1,048,308	-		HGI48_RS04995	0.55	-2.0
1,048,308	-		HGI48_RS04995	0.55	+1.3
1,048,308	-		HGI48_RS04995	0.55	+1.1
1,048,351	+		HGI48_RS04995	0.57	+1.3
1,048,351	+		HGI48_RS04995	0.57	-1.6
1,048,351	+		HGI48_RS04995	0.57	-2.0
1,048,351	+		HGI48_RS04995	0.57	+1.3
1,048,352	-				+1.0
1,048,352	-		HGI48_RS04995	0.57	+0.2
1,048,352	-		HGI48_RS04995	0.57	+1.4
1,048,352	-		HGI48_RS04995	0.57	-1.8
1,048,352	-		HGI48_RS04995	0.57	-1.6
1,048,352	-		HGI48_RS04995	0.57	-0.3
1,048,352	-		HGI48_RS04995	0.57	+0.8
1,048,352	-		HGI48_RS04995	0.57	+0.6
1,048,352	-		HGI48_RS04995	0.57	-0.7
1,048,374	+		HGI48_RS04995	0.58	-1.6
1,048,421	+		HGI48_RS04995	0.59	-0.2
1,048,455	-		HGI48_RS04995	0.60	+1.5
1,048,571	+		HGI48_RS04995	0.64	-1.8
1,048,572	-		HGI48_RS04995	0.64	+1.8
1,048,572	-		HGI48_RS04995	0.64	+1.0
1,048,661	+		HGI48_RS04995	0.67	-2.7
1,048,684	+				-0.6
1,048,706	+		HGI48_RS04995	0.69	-0.3
1,048,706	+		HGI48_RS04995	0.69	+2.6
1,048,706	+		HGI48_RS04995	0.69	+0.8
1,048,706	+		HGI48_RS04995	0.69	-2.8
1,048,706	+				-0.6
1,048,707	-		HGI48_RS04995	0.69	-2.6
1,048,707	-				-0.0
1,048,708	+		HGI48_RS04995	0.69	+0.1
1,048,708	+		HGI48_RS04995	0.69	-2.0
1,048,708	+		HGI48_RS04995	0.69	-0.2
1,048,708	+		HGI48_RS04995	0.69	-0.1
1,048,708	+				+1.4
1,048,708	+		HGI48_RS04995	0.69	-0.6
1,048,709	-		HGI48_RS04995	0.69	+2.3
1,048,709	-		HGI48_RS04995	0.69	+0.7
1,048,709	-		HGI48_RS04995	0.69	-0.8
1,048,709	-				-0.6
1,048,709	-		HGI48_RS04995	0.69	-0.5
1,048,709	-		HGI48_RS04995	0.69	+0.1
1,048,709	-		HGI48_RS04995	0.69	-1.0
1,048,709	-				+2.0
1,048,747	+				+1.0
1,048,747	+		HGI48_RS04995	0.70	-0.2
1,048,748	-				-0.6
1,048,748	-		HGI48_RS04995	0.70	-0.4
1,048,748	-		HGI48_RS04995	0.70	+0.1
1,048,748	-		HGI48_RS04995	0.70	+0.7
1,048,748	-		HGI48_RS04995	0.70	+0.3
1,048,748	-		HGI48_RS04995	0.70	-0.0
1,048,985	+		HGI48_RS04995	0.79	-1.3
1,048,985	+		HGI48_RS04995	0.79	-1.8
1,048,985	+				+2.3
1,048,986	-				+1.0
1,048,986	-		HGI48_RS04995	0.79	-2.8
1,048,986	-		HGI48_RS04995	0.79	-0.1
1,048,986	-		HGI48_RS04995	0.79	+2.2
1,048,986	-		HGI48_RS04995	0.79	+2.2
1,048,986	-		HGI48_RS04995	0.79	+1.7
1,048,986	-		HGI48_RS04995	0.79	-1.8
1,048,987	+		HGI48_RS04995	0.79	-0.1
1,049,000	+		HGI48_RS04995	0.79	+0.3
1,049,024	+		HGI48_RS04995	0.80	+0.3
1,049,025	-		HGI48_RS04995	0.80	-2.5
1,049,025	-		HGI48_RS04995	0.80	+1.0
1,049,030	-		HGI48_RS04995	0.80	+1.2
1,049,030	-		HGI48_RS04995	0.80	-1.3
1,049,046	+		HGI48_RS04995	0.81	+0.8
1,049,046	+		HGI48_RS04995	0.81	+1.2
1,049,046	+		HGI48_RS04995	0.81	+0.3
1,049,046	+				-0.6
1,049,046	+				-0.6
1,049,047	-		HGI48_RS04995	0.81	+0.3
1,049,180	+		HGI48_RS04995	0.85	-0.4
1,049,180	+		HGI48_RS04995	0.85	-1.6
1,049,181	-		HGI48_RS04995	0.85	-0.1
1,049,181	-		HGI48_RS04995	0.85	-2.7
1,049,187	-		HGI48_RS04995	0.86	-1.3
1,049,187	-		HGI48_RS04995	0.86	+2.8
1,049,263	+		HGI48_RS04995	0.88	-1.6
1,049,263	+		HGI48_RS04995	0.88	-1.3
1,049,263	+		HGI48_RS04995	0.88	-0.0
1,049,264	-		HGI48_RS04995	0.88	-1.8
1,049,264	-		HGI48_RS04995	0.88	+1.6
1,049,398	+				-1.3
1,049,398	+				+2.4
1,049,439	+				-0.6
1,049,439	+				+1.3
1,049,440	-				+2.3
1,049,440	-				-0.0
1,049,440	-				-0.0
1,049,501	+				+0.7
1,049,528	+				-2.0
1,049,528	+				-1.1
1,049,528	+				+0.2
1,049,528	+				-1.0
1,049,529	-				+0.7
1,049,529	-				-2.2
1,049,529	-				+1.0
1,049,529	-				-0.4
1,049,529	-				+1.0
1,049,600	+				+2.1
1,049,601	-				+1.0
1,049,601	-				-2.0
1,049,675	-				+1.7
1,049,675	-				+0.4
1,049,675	-				+0.3
1,049,675	-				-0.0
1,049,717	+				-2.0
1,049,717	+				-2.0
1,049,718	-				+1.5
1,049,718	-				+0.6
1,049,718	-				+2.4
1,049,725	+				-1.6
1,049,739	+				-1.6
1,049,739	+				-1.3
1,049,740	-				-2.0
1,049,767	+				-0.6
1,049,767	+				+0.7
1,049,767	+				-1.3
1,049,767	+				-1.6
1,049,767	+				+0.6
1,049,768	-				-2.0
1,049,768	-				-2.8
1,049,768	-				+0.6
1,049,768	-				-1.3
1,049,781	+				-1.6
1,049,781	+				-2.6
1,049,781	+				+2.4
1,049,782	-				-1.3
1,049,782	-				-2.7
1,049,782	-				+2.6
1,049,782	-				+1.5
1,049,782	-				-0.6
1,049,782	-				+0.1
1,049,782	-				+0.9
1,049,782	-				-0.4
1,049,795	+				+0.4
1,049,795	+				-0.6
1,049,795	+				-2.2
1,049,795	+				+0.7
1,049,795	+				+0.2
1,049,831	+				+0.5
1,049,832	-				+0.7
1,049,832	-				-1.0
1,049,832	-				-1.0
1,049,837	+				-3.4
1,049,837	+				+1.0
1,049,837	+				-2.0
1,049,837	+				+0.7
1,049,838	-				-1.8
1,049,838	-				-2.0
1,049,838	-				-1.0
1,049,838	-				+0.8
1,049,970	+		HGI48_RS05000	0.13	-1.3
1,050,121	+		HGI48_RS05000	0.24	+2.7
1,050,121	+				-0.0
1,050,122	-		HGI48_RS05000	0.24	-2.6
1,050,253	+		HGI48_RS05000	0.34	+0.3
1,050,253	+				-0.0
1,050,253	+				-0.6
1,050,254	-		HGI48_RS05000	0.34	+1.9
1,050,254	-		HGI48_RS05000	0.34	-1.5
1,050,254	-		HGI48_RS05000	0.34	-1.7
1,050,254	-		HGI48_RS05000	0.34	-1.3
1,050,254	-		HGI48_RS05000	0.34	+2.0
1,050,254	-				+1.0
1,050,254	-		HGI48_RS05000	0.34	+3.2
1,050,254	-		HGI48_RS05000	0.34	+1.1
1,050,314	+		HGI48_RS05000	0.39	-1.3
1,050,315	-		HGI48_RS05000	0.39	+0.2
1,050,338	-		HGI48_RS05000	0.40	+1.2
1,050,393	+		HGI48_RS05000	0.45	+0.2
1,050,393	+		HGI48_RS05000	0.45	+2.0
1,050,394	-		HGI48_RS05000	0.45	+0.2
1,050,394	-		HGI48_RS05000	0.45	+0.3
1,050,394	-		HGI48_RS05000	0.45	-0.8
1,050,394	-		HGI48_RS05000	0.45	-2.2
1,050,395	+		HGI48_RS05000	0.45	+1.0
1,050,395	+		HGI48_RS05000	0.45	+0.4
1,050,395	+		HGI48_RS05000	0.45	+0.7
1,050,395	+				-0.0
1,050,396	-				-0.6
1,050,396	-		HGI48_RS05000	0.45	+1.9
1,050,462	+		HGI48_RS05000	0.50	-0.0
1,050,462	+		HGI48_RS05000	0.50	+1.3
1,050,462	+				+2.0
1,050,463	-		HGI48_RS05000	0.50	-0.1
1,050,463	-		HGI48_RS05000	0.50	-2.6
1,050,567	+				+1.0
1,050,568	-		HGI48_RS05000	0.58	+1.0
1,050,568	-		HGI48_RS05000	0.58	-2.0