Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS04585

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS04575 and HGI48_RS04580 overlap by 4 nucleotidesHGI48_RS04580 and HGI48_RS04585 are separated by 58 nucleotidesHGI48_RS04585 and HGI48_RS04590 are separated by 139 nucleotides HGI48_RS04575: HGI48_RS04575 - carbohydrate ABC transporter permease, at 959,143 to 959,970 _RS04575 HGI48_RS04580: HGI48_RS04580 - ABC transporter permease subunit, at 959,967 to 960,839 _RS04580 HGI48_RS04585: HGI48_RS04585 - ABC transporter substrate-binding protein, at 960,898 to 962,193 _RS04585 HGI48_RS04590: HGI48_RS04590 - multidrug efflux MFS transporter, at 962,333 to 963,526 _RS04590 Position (kb) 960 961 962 963Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 959.941 kb on + strandat 959.941 kb on + strandat 959.942 kb on - strandat 959.942 kb on - strandat 959.957 kb on + strandat 959.958 kb on - strandat 960.005 kb on - strandat 960.005 kb on - strandat 960.005 kb on - strandat 960.094 kb on + strand, within HGI48_RS04580at 960.094 kb on + strand, within HGI48_RS04580at 960.094 kb on + strand, within HGI48_RS04580at 960.094 kb on + strand, within HGI48_RS04580at 960.094 kb on + strand, within HGI48_RS04580at 960.095 kb on - strand, within HGI48_RS04580at 960.095 kb on - strand, within HGI48_RS04580at 960.095 kb on - strand, within HGI48_RS04580at 960.095 kb on - strandat 960.095 kb on - strand, within HGI48_RS04580at 960.095 kb on - strand, within HGI48_RS04580at 960.095 kb on - strand, within HGI48_RS04580at 960.095 kb on - strand, within HGI48_RS04580at 960.095 kb on - strand, within HGI48_RS04580at 960.098 kb on + strand, within HGI48_RS04580at 960.098 kb on + strand, within HGI48_RS04580at 960.098 kb on + strandat 960.098 kb on + strand, within HGI48_RS04580at 960.098 kb on + strand, within HGI48_RS04580at 960.098 kb on + strand, within HGI48_RS04580at 960.098 kb on + strand, within HGI48_RS04580at 960.098 kb on + strand, within HGI48_RS04580at 960.098 kb on + strand, within HGI48_RS04580at 960.098 kb on + strandat 960.098 kb on + strandat 960.099 kb on - strand, within HGI48_RS04580at 960.099 kb on - strand, within HGI48_RS04580at 960.099 kb on - strand, within HGI48_RS04580at 960.099 kb on - strand, within HGI48_RS04580at 960.099 kb on - strand, within HGI48_RS04580at 960.099 kb on - strand, within HGI48_RS04580at 960.099 kb on - strand, within HGI48_RS04580at 960.100 kb on + strand, within HGI48_RS04580at 960.100 kb on + strandat 960.100 kb on + strand, within HGI48_RS04580at 960.100 kb on + strand, within HGI48_RS04580at 960.100 kb on + strand, within HGI48_RS04580at 960.100 kb on + strand, within HGI48_RS04580at 960.100 kb on + strand, within HGI48_RS04580at 960.101 kb on - strand, within HGI48_RS04580at 960.101 kb on - strand, within HGI48_RS04580at 960.101 kb on - strand, within HGI48_RS04580at 960.101 kb on - strand, within HGI48_RS04580at 960.101 kb on - strand, within HGI48_RS04580at 960.238 kb on + strand, within HGI48_RS04580at 960.238 kb on + strand, within HGI48_RS04580at 960.238 kb on + strand, within HGI48_RS04580at 960.239 kb on - strand, within HGI48_RS04580at 960.327 kb on - strand, within HGI48_RS04580at 960.327 kb on - strand, within HGI48_RS04580at 960.440 kb on + strand, within HGI48_RS04580at 960.440 kb on + strand, within HGI48_RS04580at 960.718 kb on + strand, within HGI48_RS04580at 960.739 kb on + strand, within HGI48_RS04580at 960.740 kb on - strand, within HGI48_RS04580at 960.899 kb on + strandat 960.900 kb on - strandat 960.900 kb on - strandat 960.900 kb on - strandat 960.907 kb on + strandat 960.908 kb on - strandat 960.908 kb on - strandat 960.984 kb on - strandat 960.984 kb on - strandat 960.984 kb on - strandat 961.079 kb on + strand, within HGI48_RS04585at 961.080 kb on - strand, within HGI48_RS04585at 961.178 kb on + strand, within HGI48_RS04585at 961.178 kb on + strand, within HGI48_RS04585at 961.178 kb on + strandat 961.178 kb on + strand, within HGI48_RS04585at 961.178 kb on + strandat 961.299 kb on + strand, within HGI48_RS04585at 961.415 kb on + strand, within HGI48_RS04585at 961.415 kb on + strand, within HGI48_RS04585at 961.415 kb on + strand, within HGI48_RS04585at 961.415 kb on + strand, within HGI48_RS04585at 961.415 kb on + strand, within HGI48_RS04585at 961.416 kb on - strand, within HGI48_RS04585at 961.416 kb on - strand, within HGI48_RS04585at 961.416 kb on - strand, within HGI48_RS04585at 961.416 kb on - strandat 961.475 kb on - strand, within HGI48_RS04585at 961.475 kb on - strandat 961.700 kb on + strand, within HGI48_RS04585at 961.739 kb on + strand, within HGI48_RS04585at 961.740 kb on - strandat 961.928 kb on + strand, within HGI48_RS04585at 962.021 kb on + strand, within HGI48_RS04585at 962.021 kb on + strand, within HGI48_RS04585at 962.023 kb on + strand, within HGI48_RS04585at 962.023 kb on + strand, within HGI48_RS04585at 962.023 kb on + strand, within HGI48_RS04585at 962.023 kb on + strand, within HGI48_RS04585at 962.023 kb on + strand, within HGI48_RS04585at 962.023 kb on + strand, within HGI48_RS04585at 962.024 kb on - strand, within HGI48_RS04585at 962.024 kb on - strand, within HGI48_RS04585at 962.024 kb on - strand, within HGI48_RS04585at 962.024 kb on - strand, within HGI48_RS04585at 962.024 kb on - strand, within HGI48_RS04585at 962.024 kb on - strandat 962.193 kb on + strandat 962.193 kb on + strandat 962.193 kb on + strandat 962.193 kb on + strandat 962.193 kb on + strandat 962.194 kb on - strandat 962.220 kb on + strandat 962.221 kb on - strandat 962.221 kb on - strandat 962.221 kb on - strandat 962.497 kb on + strand, within HGI48_RS04590at 962.497 kb on + strand, within HGI48_RS04590at 962.497 kb on + strand, within HGI48_RS04590at 962.498 kb on - strand, within HGI48_RS04590at 962.509 kb on + strand, within HGI48_RS04590at 962.535 kb on + strand, within HGI48_RS04590at 962.535 kb on + strandat 962.536 kb on - strand, within HGI48_RS04590at 962.536 kb on - strand, within HGI48_RS04590at 962.777 kb on - strand, within HGI48_RS04590at 962.788 kb on + strandat 962.789 kb on - strand, within HGI48_RS04590at 962.789 kb on - strand, within HGI48_RS04590at 962.816 kb on - strand, within HGI48_RS04590at 962.986 kb on + strand, within HGI48_RS04590at 963.001 kb on + strand, within HGI48_RS04590at 963.002 kb on - strand, within HGI48_RS04590at 963.080 kb on + strand, within HGI48_RS04590at 963.183 kb on + strandat 963.183 kb on + strand, within HGI48_RS04590

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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959,941 + -2.6
959,941 + -0.8
959,942 - +2.2
959,942 - -1.0
959,957 + -0.8
959,958 - -1.3
960,005 - -1.4
960,005 - -0.2
960,005 - +0.6
960,094 + HGI48_RS04580 0.15 -1.3
960,094 + HGI48_RS04580 0.15 -2.7
960,094 + HGI48_RS04580 0.15 +1.8
960,094 + HGI48_RS04580 0.15 -0.7
960,094 + HGI48_RS04580 0.15 +0.8
960,095 - HGI48_RS04580 0.15 +1.2
960,095 - HGI48_RS04580 0.15 -2.0
960,095 - HGI48_RS04580 0.15 +2.4
960,095 - +0.4
960,095 - HGI48_RS04580 0.15 +1.5
960,095 - HGI48_RS04580 0.15 -1.6
960,095 - HGI48_RS04580 0.15 +1.6
960,095 - HGI48_RS04580 0.15 -2.6
960,095 - HGI48_RS04580 0.15 -2.9
960,098 + HGI48_RS04580 0.15 +0.1
960,098 + HGI48_RS04580 0.15 -0.2
960,098 + +1.0
960,098 + HGI48_RS04580 0.15 +3.1
960,098 + HGI48_RS04580 0.15 -1.4
960,098 + HGI48_RS04580 0.15 -0.7
960,098 + HGI48_RS04580 0.15 +0.8
960,098 + HGI48_RS04580 0.15 +1.4
960,098 + HGI48_RS04580 0.15 +0.4
960,098 + +1.6
960,098 + -0.6
960,099 - HGI48_RS04580 0.15 -0.0
960,099 - HGI48_RS04580 0.15 -0.0
960,099 - HGI48_RS04580 0.15 +0.6
960,099 - HGI48_RS04580 0.15 +0.7
960,099 - HGI48_RS04580 0.15 -1.0
960,099 - HGI48_RS04580 0.15 -1.0
960,099 - HGI48_RS04580 0.15 +1.0
960,100 + HGI48_RS04580 0.15 -1.6
960,100 + +1.0
960,100 + HGI48_RS04580 0.15 -1.0
960,100 + HGI48_RS04580 0.15 +1.6
960,100 + HGI48_RS04580 0.15 -1.6
960,100 + HGI48_RS04580 0.15 +0.2
960,100 + HGI48_RS04580 0.15 +1.4
960,101 - HGI48_RS04580 0.15 -0.7
960,101 - HGI48_RS04580 0.15 -1.6
960,101 - HGI48_RS04580 0.15 -0.5
960,101 - HGI48_RS04580 0.15 -1.0
960,101 - HGI48_RS04580 0.15 +1.0
960,238 + HGI48_RS04580 0.31 -1.6
960,238 + HGI48_RS04580 0.31 +0.5
960,238 + HGI48_RS04580 0.31 -0.2
960,239 - HGI48_RS04580 0.31 -1.4
960,327 - HGI48_RS04580 0.41 -3.5
960,327 - HGI48_RS04580 0.41 -3.1
960,440 + HGI48_RS04580 0.54 -3.0
960,440 + HGI48_RS04580 0.54 -2.0
960,718 + HGI48_RS04580 0.86 +0.3
960,739 + HGI48_RS04580 0.88 +0.6
960,740 - HGI48_RS04580 0.89 -1.6
960,899 + -1.4
960,900 - -0.8
960,900 - +1.2
960,900 - -0.0
960,907 + -1.0
960,908 - -1.2
960,908 - -2.6
960,984 - -2.3
960,984 - +1.8
960,984 - +2.0
961,079 + HGI48_RS04585 0.14 -1.8
961,080 - HGI48_RS04585 0.14 -1.4
961,178 + HGI48_RS04585 0.22 +0.6
961,178 + HGI48_RS04585 0.22 -0.4
961,178 + +3.0
961,178 + HGI48_RS04585 0.22 -2.2
961,178 + +2.0
961,299 + HGI48_RS04585 0.31 -1.0
961,415 + HGI48_RS04585 0.40 +1.0
961,415 + HGI48_RS04585 0.40 +0.2
961,415 + HGI48_RS04585 0.40 +0.7
961,415 + HGI48_RS04585 0.40 +0.7
961,415 + HGI48_RS04585 0.40 +0.4
961,416 - HGI48_RS04585 0.40 -2.2
961,416 - HGI48_RS04585 0.40 +0.2
961,416 - HGI48_RS04585 0.40 -0.4
961,416 - -0.6
961,475 - HGI48_RS04585 0.45 -1.6
961,475 - -0.0
961,700 + HGI48_RS04585 0.62 +0.3
961,739 + HGI48_RS04585 0.65 -1.5
961,740 - -0.6
961,928 + HGI48_RS04585 0.79 -1.0
962,021 + HGI48_RS04585 0.87 -1.4
962,021 + HGI48_RS04585 0.87 +0.1
962,023 + HGI48_RS04585 0.87 -0.0
962,023 + HGI48_RS04585 0.87 +1.9
962,023 + HGI48_RS04585 0.87 -1.8
962,023 + HGI48_RS04585 0.87 -3.2
962,023 + HGI48_RS04585 0.87 -1.5
962,023 + HGI48_RS04585 0.87 +0.3
962,024 - HGI48_RS04585 0.87 +0.6
962,024 - HGI48_RS04585 0.87 +0.2
962,024 - HGI48_RS04585 0.87 +0.1
962,024 - HGI48_RS04585 0.87 +2.7
962,024 - HGI48_RS04585 0.87 +0.5
962,024 - +1.4
962,193 + -0.0
962,193 + -1.0
962,193 + -0.4
962,193 + -0.6
962,193 + +0.5
962,194 - +0.7
962,220 + -1.4
962,221 - +1.6
962,221 - +0.6
962,221 - +2.6
962,497 + HGI48_RS04590 0.14 -1.0
962,497 + HGI48_RS04590 0.14 -1.6
962,497 + HGI48_RS04590 0.14 -1.3
962,498 - HGI48_RS04590 0.14 -1.4
962,509 + HGI48_RS04590 0.15 +1.3
962,535 + HGI48_RS04590 0.17 -1.6
962,535 + -0.6
962,536 - HGI48_RS04590 0.17 +1.4
962,536 - HGI48_RS04590 0.17 +0.4
962,777 - HGI48_RS04590 0.37 -0.9
962,788 + +0.4
962,789 - HGI48_RS04590 0.38 -1.8
962,789 - HGI48_RS04590 0.38 -0.7
962,816 - HGI48_RS04590 0.40 +0.7
962,986 + HGI48_RS04590 0.55 +0.3
963,001 + HGI48_RS04590 0.56 -3.2
963,002 - HGI48_RS04590 0.56 -1.0
963,080 + HGI48_RS04590 0.63 -2.0
963,183 + -0.6
963,183 + HGI48_RS04590 0.71 -1.8

Or see this region's nucleotide sequence