Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04560 and HGI48_RS04565 overlap by 8 nucleotides HGI48_RS04565 and HGI48_RS04570 overlap by 11 nucleotides
HGI48_RS04560: HGI48_RS04560 - LacI family DNA-binding transcriptional regulator, at 956,273 to 957,259
_RS04560
HGI48_RS04565: HGI48_RS04565 - ribonuclease Z, at 957,252 to 958,019
_RS04565
HGI48_RS04570: HGI48_RS04570 - ABC transporter ATP-binding protein, at 958,009 to 959,133
_RS04570
Position (kb) 957
958
959 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 956.296 kb on + strand at 956.296 kb on + strand at 956.297 kb on - strand at 956.700 kb on + strand, within HGI48_RS04560 at 956.700 kb on + strand, within HGI48_RS04560 at 956.700 kb on + strand, within HGI48_RS04560 at 956.700 kb on + strand at 956.700 kb on + strand, within HGI48_RS04560 at 956.700 kb on + strand, within HGI48_RS04560 at 956.700 kb on + strand, within HGI48_RS04560 at 956.701 kb on - strand, within HGI48_RS04560 at 956.701 kb on - strand, within HGI48_RS04560 at 956.701 kb on - strand at 956.701 kb on - strand, within HGI48_RS04560 at 957.183 kb on + strand at 957.183 kb on + strand at 957.253 kb on + strand at 957.253 kb on + strand at 957.391 kb on + strand, within HGI48_RS04565 at 957.454 kb on + strand, within HGI48_RS04565 at 957.556 kb on + strand, within HGI48_RS04565 at 957.556 kb on + strand, within HGI48_RS04565 at 957.557 kb on - strand, within HGI48_RS04565 at 957.677 kb on + strand, within HGI48_RS04565 at 957.677 kb on + strand, within HGI48_RS04565 at 957.684 kb on - strand, within HGI48_RS04565 at 957.853 kb on + strand, within HGI48_RS04565 at 957.853 kb on + strand, within HGI48_RS04565 at 957.853 kb on + strand, within HGI48_RS04565 at 957.853 kb on + strand, within HGI48_RS04565 at 957.853 kb on + strand, within HGI48_RS04565 at 957.853 kb on + strand, within HGI48_RS04565 at 957.853 kb on + strand, within HGI48_RS04565 at 957.853 kb on + strand, within HGI48_RS04565 at 957.853 kb on + strand at 957.853 kb on + strand, within HGI48_RS04565 at 957.853 kb on + strand, within HGI48_RS04565 at 957.853 kb on + strand, within HGI48_RS04565 at 957.853 kb on + strand at 957.853 kb on + strand, within HGI48_RS04565 at 957.853 kb on + strand, within HGI48_RS04565 at 957.853 kb on + strand, within HGI48_RS04565 at 957.854 kb on - strand, within HGI48_RS04565 at 957.854 kb on - strand, within HGI48_RS04565 at 957.854 kb on - strand, within HGI48_RS04565 at 957.854 kb on - strand, within HGI48_RS04565 at 957.854 kb on - strand, within HGI48_RS04565 at 957.985 kb on + strand at 957.986 kb on - strand at 957.986 kb on - strand at 958.199 kb on + strand, within HGI48_RS04570 at 958.199 kb on + strand, within HGI48_RS04570 at 958.199 kb on + strand at 958.199 kb on + strand, within HGI48_RS04570 at 958.200 kb on - strand, within HGI48_RS04570 at 958.469 kb on + strand, within HGI48_RS04570 at 958.469 kb on + strand, within HGI48_RS04570 at 958.469 kb on + strand, within HGI48_RS04570 at 958.469 kb on + strand, within HGI48_RS04570 at 958.549 kb on + strand at 958.568 kb on + strand at 958.568 kb on + strand, within HGI48_RS04570 at 958.568 kb on + strand, within HGI48_RS04570 at 958.568 kb on + strand, within HGI48_RS04570 at 958.568 kb on + strand, within HGI48_RS04570 at 958.568 kb on + strand, within HGI48_RS04570 at 958.568 kb on + strand, within HGI48_RS04570 at 958.569 kb on - strand, within HGI48_RS04570 at 958.683 kb on + strand, within HGI48_RS04570 at 958.747 kb on - strand, within HGI48_RS04570 at 958.883 kb on + strand, within HGI48_RS04570 at 958.884 kb on - strand, within HGI48_RS04570 at 958.884 kb on - strand, within HGI48_RS04570
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 956,296 + +0.8 956,296 + +0.2 956,297 - +1.9 956,700 + HGI48_RS04560 0.43 -1.0 956,700 + HGI48_RS04560 0.43 -1.6 956,700 + HGI48_RS04560 0.43 -1.0 956,700 + +1.7 956,700 + HGI48_RS04560 0.43 +2.0 956,700 + HGI48_RS04560 0.43 -0.3 956,700 + HGI48_RS04560 0.43 -0.6 956,701 - HGI48_RS04560 0.43 +1.2 956,701 - HGI48_RS04560 0.43 -0.3 956,701 - +1.7 956,701 - HGI48_RS04560 0.43 -0.8 957,183 + +0.0 957,183 + -0.1 957,253 + -0.1 957,253 + +2.7 957,391 + HGI48_RS04565 0.18 +0.5 957,454 + HGI48_RS04565 0.26 -0.4 957,556 + HGI48_RS04565 0.40 +1.0 957,556 + HGI48_RS04565 0.40 -2.0 957,557 - HGI48_RS04565 0.40 -1.8 957,677 + HGI48_RS04565 0.55 -1.8 957,677 + HGI48_RS04565 0.55 -2.4 957,684 - HGI48_RS04565 0.56 +0.3 957,853 + HGI48_RS04565 0.78 -2.0 957,853 + HGI48_RS04565 0.78 -1.6 957,853 + HGI48_RS04565 0.78 +1.3 957,853 + HGI48_RS04565 0.78 -3.1 957,853 + HGI48_RS04565 0.78 +0.6 957,853 + HGI48_RS04565 0.78 -0.4 957,853 + HGI48_RS04565 0.78 -1.4 957,853 + HGI48_RS04565 0.78 -0.5 957,853 + +1.4 957,853 + HGI48_RS04565 0.78 -0.4 957,853 + HGI48_RS04565 0.78 -1.6 957,853 + HGI48_RS04565 0.78 -1.8 957,853 + -0.6 957,853 + HGI48_RS04565 0.78 +0.3 957,853 + HGI48_RS04565 0.78 +2.4 957,853 + HGI48_RS04565 0.78 -0.0 957,854 - HGI48_RS04565 0.78 -1.8 957,854 - HGI48_RS04565 0.78 -1.0 957,854 - HGI48_RS04565 0.78 -1.0 957,854 - HGI48_RS04565 0.78 -0.4 957,854 - HGI48_RS04565 0.78 +1.2 957,985 + -2.4 957,986 - +0.5 957,986 - -1.0 958,199 + HGI48_RS04570 0.17 -2.4 958,199 + HGI48_RS04570 0.17 +1.2 958,199 + +2.0 958,199 + HGI48_RS04570 0.17 -0.9 958,200 - HGI48_RS04570 0.17 +0.5 958,469 + HGI48_RS04570 0.41 -2.5 958,469 + HGI48_RS04570 0.41 +0.2 958,469 + HGI48_RS04570 0.41 +0.6 958,469 + HGI48_RS04570 0.41 -1.4 958,549 + +0.4 958,568 + +1.4 958,568 + HGI48_RS04570 0.50 -0.5 958,568 + HGI48_RS04570 0.50 -1.6 958,568 + HGI48_RS04570 0.50 -1.6 958,568 + HGI48_RS04570 0.50 -0.2 958,568 + HGI48_RS04570 0.50 -1.6 958,568 + HGI48_RS04570 0.50 +0.7 958,569 - HGI48_RS04570 0.50 +1.2 958,683 + HGI48_RS04570 0.60 -1.4 958,747 - HGI48_RS04570 0.66 -0.4 958,883 + HGI48_RS04570 0.78 -2.2 958,884 - HGI48_RS04570 0.78 +1.3 958,884 - HGI48_RS04570 0.78 -1.4
Or see this region's nucleotide sequence