Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04320 and HGI48_RS04325 are separated by 83 nucleotides HGI48_RS04325 and HGI48_RS04330 are separated by 172 nucleotides
HGI48_RS04320: HGI48_RS04320 - DNA repair protein RecN, at 903,852 to 905,513
_RS04320
HGI48_RS04325: HGI48_RS04325 - NAD(+) kinase, at 905,597 to 906,475
_RS04325
HGI48_RS04330: HGI48_RS04330 - nucleotide exchange factor GrpE, at 906,648 to 907,235
_RS04330
Position (kb)
905
906
907 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 904.618 kb on + strand, within HGI48_RS04320 at 904.619 kb on - strand, within HGI48_RS04320 at 904.873 kb on + strand, within HGI48_RS04320 at 904.874 kb on - strand, within HGI48_RS04320 at 904.940 kb on - strand, within HGI48_RS04320 at 905.049 kb on + strand, within HGI48_RS04320 at 905.049 kb on + strand at 905.050 kb on - strand at 905.050 kb on - strand, within HGI48_RS04320 at 905.068 kb on + strand, within HGI48_RS04320 at 905.104 kb on - strand, within HGI48_RS04320 at 905.399 kb on + strand at 905.517 kb on - strand at 905.526 kb on + strand at 905.531 kb on - strand at 905.546 kb on + strand at 905.550 kb on + strand at 905.551 kb on - strand at 905.573 kb on - strand at 905.578 kb on - strand at 905.592 kb on + strand at 906.487 kb on - strand at 906.487 kb on - strand at 906.487 kb on - strand at 906.487 kb on - strand at 906.543 kb on + strand at 906.543 kb on + strand at 906.544 kb on - strand at 906.544 kb on - strand at 906.544 kb on - strand at 906.544 kb on - strand at 906.544 kb on - strand at 906.544 kb on - strand at 906.544 kb on - strand at 906.614 kb on + strand at 907.233 kb on + strand at 907.233 kb on + strand at 907.233 kb on + strand at 907.233 kb on + strand at 907.234 kb on - strand at 907.234 kb on - strand at 907.329 kb on + strand at 907.329 kb on + strand at 907.347 kb on + strand at 907.374 kb on + strand at 907.375 kb on - strand at 907.408 kb on + strand at 907.409 kb on - strand at 907.412 kb on + strand at 907.412 kb on + strand at 907.412 kb on + strand at 907.412 kb on + strand at 907.426 kb on + strand at 907.427 kb on - strand at 907.431 kb on - strand at 907.431 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 904,618 + HGI48_RS04320 0.46 +0.5 904,619 - HGI48_RS04320 0.46 -0.3 904,873 + HGI48_RS04320 0.61 -0.3 904,874 - HGI48_RS04320 0.61 -1.3 904,940 - HGI48_RS04320 0.65 -1.6 905,049 + HGI48_RS04320 0.72 +1.7 905,049 + -0.0 905,050 - +2.3 905,050 - HGI48_RS04320 0.72 -1.6 905,068 + HGI48_RS04320 0.73 -1.1 905,104 - HGI48_RS04320 0.75 -1.3 905,399 + -0.4 905,517 - -1.3 905,526 + +2.1 905,531 - +0.3 905,546 + +0.2 905,550 + +0.6 905,551 - -2.3 905,573 - +1.3 905,578 - -1.0 905,592 + -1.0 906,487 - -1.0 906,487 - -1.0 906,487 - -0.9 906,487 - -1.0 906,543 + +0.6 906,543 + -1.3 906,544 - +0.5 906,544 - +0.5 906,544 - +0.5 906,544 - +0.6 906,544 - -2.9 906,544 - -1.6 906,544 - +1.6 906,614 + -2.2 907,233 + +1.0 907,233 + +0.4 907,233 + -0.0 907,233 + -1.0 907,234 - +0.7 907,234 - +1.3 907,329 + +0.4 907,329 + +1.7 907,347 + +1.0 907,374 + +2.7 907,375 - +0.5 907,408 + -1.0 907,409 - +1.1 907,412 + +0.3 907,412 + -1.6 907,412 + -0.5 907,412 + -0.6 907,426 + +0.4 907,427 - -2.3 907,431 - +1.7 907,431 - -0.6
Or see this region's nucleotide sequence