Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04225 and HGI48_RS04230 are separated by 584 nucleotides HGI48_RS04230 and HGI48_RS04235 are separated by 878 nucleotides
HGI48_RS04225: HGI48_RS04225 - hypothetical protein, at 889,196 to 889,498
_RS04225
HGI48_RS04230: HGI48_RS04230 - dienelactone hydrolase family protein, at 890,083 to 891,261
_RS04230
HGI48_RS04235: HGI48_RS04235 - AlpA family transcriptional regulator, at 892,140 to 892,343
_RS04235
Position (kb) 890
891
892 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 889.183 kb on + strand at 889.246 kb on + strand, within HGI48_RS04225 at 889.253 kb on + strand, within HGI48_RS04225 at 889.254 kb on - strand at 889.254 kb on - strand, within HGI48_RS04225 at 889.254 kb on - strand, within HGI48_RS04225 at 889.254 kb on - strand, within HGI48_RS04225 at 889.322 kb on - strand at 889.418 kb on + strand at 889.419 kb on - strand, within HGI48_RS04225 at 889.448 kb on - strand, within HGI48_RS04225 at 889.468 kb on + strand at 889.503 kb on + strand at 889.504 kb on - strand at 889.533 kb on - strand at 889.535 kb on + strand at 889.614 kb on + strand at 889.622 kb on - strand at 889.770 kb on - strand at 889.873 kb on + strand at 889.979 kb on - strand at 889.999 kb on + strand at 889.999 kb on + strand at 889.999 kb on + strand at 890.004 kb on + strand at 890.004 kb on + strand at 890.004 kb on + strand at 890.005 kb on - strand at 890.007 kb on + strand at 890.010 kb on + strand at 890.010 kb on + strand at 890.011 kb on - strand at 890.011 kb on - strand at 890.011 kb on - strand at 890.013 kb on + strand at 890.014 kb on - strand at 890.050 kb on + strand at 890.055 kb on + strand at 890.055 kb on + strand at 890.114 kb on + strand at 890.114 kb on + strand at 890.114 kb on + strand at 890.114 kb on + strand at 890.115 kb on - strand at 890.123 kb on + strand at 890.350 kb on - strand, within HGI48_RS04230 at 890.350 kb on - strand, within HGI48_RS04230 at 890.391 kb on + strand, within HGI48_RS04230 at 890.392 kb on - strand, within HGI48_RS04230 at 890.392 kb on - strand, within HGI48_RS04230 at 890.519 kb on + strand, within HGI48_RS04230 at 890.519 kb on + strand, within HGI48_RS04230 at 890.519 kb on + strand, within HGI48_RS04230 at 890.519 kb on + strand, within HGI48_RS04230 at 890.519 kb on + strand, within HGI48_RS04230 at 890.519 kb on + strand at 890.519 kb on + strand, within HGI48_RS04230 at 890.520 kb on - strand, within HGI48_RS04230 at 890.520 kb on - strand, within HGI48_RS04230 at 890.520 kb on - strand, within HGI48_RS04230 at 890.523 kb on + strand, within HGI48_RS04230 at 890.529 kb on + strand, within HGI48_RS04230 at 890.529 kb on + strand, within HGI48_RS04230 at 890.530 kb on - strand, within HGI48_RS04230 at 890.628 kb on - strand at 890.628 kb on - strand, within HGI48_RS04230 at 890.657 kb on + strand, within HGI48_RS04230 at 890.657 kb on + strand, within HGI48_RS04230 at 890.657 kb on + strand, within HGI48_RS04230 at 890.670 kb on + strand, within HGI48_RS04230 at 890.671 kb on - strand, within HGI48_RS04230 at 890.730 kb on - strand, within HGI48_RS04230 at 890.766 kb on + strand, within HGI48_RS04230 at 890.766 kb on + strand, within HGI48_RS04230 at 890.767 kb on - strand, within HGI48_RS04230 at 890.772 kb on + strand, within HGI48_RS04230 at 890.772 kb on + strand, within HGI48_RS04230 at 890.785 kb on + strand, within HGI48_RS04230 at 890.785 kb on + strand, within HGI48_RS04230 at 890.786 kb on - strand, within HGI48_RS04230 at 890.786 kb on - strand, within HGI48_RS04230 at 890.843 kb on - strand, within HGI48_RS04230 at 890.843 kb on - strand, within HGI48_RS04230 at 890.872 kb on - strand, within HGI48_RS04230 at 890.911 kb on - strand at 890.912 kb on + strand at 890.912 kb on + strand, within HGI48_RS04230 at 890.913 kb on - strand at 891.048 kb on + strand, within HGI48_RS04230 at 891.049 kb on - strand, within HGI48_RS04230 at 891.061 kb on + strand, within HGI48_RS04230 at 891.061 kb on + strand, within HGI48_RS04230 at 891.061 kb on + strand, within HGI48_RS04230 at 891.062 kb on - strand, within HGI48_RS04230 at 891.064 kb on + strand, within HGI48_RS04230 at 891.065 kb on - strand, within HGI48_RS04230 at 891.113 kb on + strand, within HGI48_RS04230 at 891.130 kb on + strand, within HGI48_RS04230 at 891.130 kb on + strand, within HGI48_RS04230 at 891.130 kb on + strand, within HGI48_RS04230 at 891.130 kb on + strand, within HGI48_RS04230 at 891.130 kb on + strand, within HGI48_RS04230 at 891.131 kb on - strand, within HGI48_RS04230 at 891.144 kb on + strand at 891.144 kb on + strand at 891.145 kb on - strand at 891.171 kb on + strand at 891.214 kb on + strand at 891.215 kb on - strand at 891.215 kb on - strand at 891.656 kb on + strand at 891.657 kb on - strand at 891.657 kb on - strand at 891.657 kb on - strand at 891.657 kb on - strand at 891.668 kb on + strand at 891.685 kb on + strand at 891.686 kb on - strand at 891.686 kb on - strand at 891.729 kb on - strand at 891.756 kb on + strand at 891.858 kb on + strand at 891.859 kb on - strand at 891.888 kb on + strand at 891.902 kb on - strand at 891.911 kb on + strand at 891.939 kb on - strand at 892.108 kb on + strand at 892.108 kb on + strand at 892.108 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 889,183 + +2.2 889,246 + HGI48_RS04225 0.17 -1.3 889,253 + HGI48_RS04225 0.19 -1.6 889,254 - +2.7 889,254 - HGI48_RS04225 0.19 +1.2 889,254 - HGI48_RS04225 0.19 -0.3 889,254 - HGI48_RS04225 0.19 -1.2 889,322 - +2.2 889,418 + +1.0 889,419 - HGI48_RS04225 0.74 +0.4 889,448 - HGI48_RS04225 0.83 +1.7 889,468 + -0.3 889,503 + -1.3 889,504 - -0.6 889,533 - +0.6 889,535 + -2.3 889,614 + +0.3 889,622 - -0.6 889,770 - +2.2 889,873 + -1.0 889,979 - +0.4 889,999 + +0.0 889,999 + -0.6 889,999 + +1.4 890,004 + +1.8 890,004 + +2.6 890,004 + -2.3 890,005 - -1.0 890,007 + -1.3 890,010 + -0.1 890,010 + -2.3 890,011 - +2.3 890,011 - -1.6 890,011 - -0.6 890,013 + +1.6 890,014 - +1.2 890,050 + +0.4 890,055 + +0.2 890,055 + +0.2 890,114 + +1.0 890,114 + -1.3 890,114 + +0.1 890,114 + -1.6 890,115 - -2.0 890,123 + -1.6 890,350 - HGI48_RS04230 0.23 +0.8 890,350 - HGI48_RS04230 0.23 -1.8 890,391 + HGI48_RS04230 0.26 +1.3 890,392 - HGI48_RS04230 0.26 -1.6 890,392 - HGI48_RS04230 0.26 -0.8 890,519 + HGI48_RS04230 0.37 +0.3 890,519 + HGI48_RS04230 0.37 +2.3 890,519 + HGI48_RS04230 0.37 -1.2 890,519 + HGI48_RS04230 0.37 -0.1 890,519 + HGI48_RS04230 0.37 +0.3 890,519 + -0.6 890,519 + HGI48_RS04230 0.37 +3.0 890,520 - HGI48_RS04230 0.37 -1.8 890,520 - HGI48_RS04230 0.37 -1.3 890,520 - HGI48_RS04230 0.37 -0.6 890,523 + HGI48_RS04230 0.37 +1.1 890,529 + HGI48_RS04230 0.38 +1.7 890,529 + HGI48_RS04230 0.38 -1.3 890,530 - HGI48_RS04230 0.38 -1.0 890,628 - +3.3 890,628 - HGI48_RS04230 0.46 +1.0 890,657 + HGI48_RS04230 0.49 -0.8 890,657 + HGI48_RS04230 0.49 +1.5 890,657 + HGI48_RS04230 0.49 -2.8 890,670 + HGI48_RS04230 0.50 +0.3 890,671 - HGI48_RS04230 0.50 -0.0 890,730 - HGI48_RS04230 0.55 -0.2 890,766 + HGI48_RS04230 0.58 +2.0 890,766 + HGI48_RS04230 0.58 +0.2 890,767 - HGI48_RS04230 0.58 +1.3 890,772 + HGI48_RS04230 0.58 +1.2 890,772 + HGI48_RS04230 0.58 -1.8 890,785 + HGI48_RS04230 0.60 +0.1 890,785 + HGI48_RS04230 0.60 +0.2 890,786 - HGI48_RS04230 0.60 -2.7 890,786 - HGI48_RS04230 0.60 +0.7 890,843 - HGI48_RS04230 0.64 -0.4 890,843 - HGI48_RS04230 0.64 -2.0 890,872 - HGI48_RS04230 0.67 -1.0 890,911 - +1.6 890,912 + -0.6 890,912 + HGI48_RS04230 0.70 -0.0 890,913 - +1.0 891,048 + HGI48_RS04230 0.82 -1.0 891,049 - HGI48_RS04230 0.82 -1.6 891,061 + HGI48_RS04230 0.83 -2.6 891,061 + HGI48_RS04230 0.83 -1.8 891,061 + HGI48_RS04230 0.83 -2.0 891,062 - HGI48_RS04230 0.83 +0.3 891,064 + HGI48_RS04230 0.83 +0.9 891,065 - HGI48_RS04230 0.83 -1.8 891,113 + HGI48_RS04230 0.87 +0.6 891,130 + HGI48_RS04230 0.89 +1.0 891,130 + HGI48_RS04230 0.89 -0.7 891,130 + HGI48_RS04230 0.89 +0.1 891,130 + HGI48_RS04230 0.89 -1.3 891,130 + HGI48_RS04230 0.89 -0.6 891,131 - HGI48_RS04230 0.89 +0.2 891,144 + -0.2 891,144 + +1.8 891,145 - -3.0 891,171 + -2.6 891,214 + +0.8 891,215 - +0.5 891,215 - -1.6 891,656 + -0.2 891,657 - +0.3 891,657 - -1.6 891,657 - +0.7 891,657 - -0.0 891,668 + +1.0 891,685 + -1.8 891,686 - -1.3 891,686 - +1.8 891,729 - -0.6 891,756 + -1.0 891,858 + -0.0 891,859 - -1.8 891,888 + -0.6 891,902 - -1.0 891,911 + +1.2 891,939 - -0.7 892,108 + +1.0 892,108 + -0.0 892,108 + +1.5
Or see this region's nucleotide sequence