Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04005 and HGI48_RS04010 are separated by 95 nucleotides HGI48_RS04010 and HGI48_RS04015 are separated by 191 nucleotides HGI48_RS04015 and HGI48_RS04020 are separated by 448 nucleotides
HGI48_RS04005: HGI48_RS04005 - FMN-dependent NADH-azoreductase, at 848,274 to 848,882
_RS04005
HGI48_RS04010: HGI48_RS04010 - helix-turn-helix transcriptional regulator, at 848,978 to 849,385
_RS04010
HGI48_RS04015: HGI48_RS04015 - relaxase/mobilization nuclease and DUF3363 domain-containing protein, at 849,577 to 851,571
_RS04015
HGI48_RS04020: HGI48_RS04020 - S26 family signal peptidase, at 852,020 to 852,607
_RS04020
Position (kb) 849
850
851
852 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 848.599 kb on + strand, within HGI48_RS04005 at 848.599 kb on + strand, within HGI48_RS04005 at 848.599 kb on + strand, within HGI48_RS04005 at 848.599 kb on + strand, within HGI48_RS04005 at 848.599 kb on + strand, within HGI48_RS04005 at 848.600 kb on - strand, within HGI48_RS04005 at 848.600 kb on - strand, within HGI48_RS04005 at 848.600 kb on - strand, within HGI48_RS04005 at 848.600 kb on - strand, within HGI48_RS04005 at 848.715 kb on + strand, within HGI48_RS04005 at 848.882 kb on + strand at 848.882 kb on + strand at 848.883 kb on - strand at 848.901 kb on - strand at 848.952 kb on - strand at 848.960 kb on + strand at 848.960 kb on + strand at 848.961 kb on - strand at 848.974 kb on + strand at 848.975 kb on - strand at 848.985 kb on + strand at 848.985 kb on + strand at 848.986 kb on - strand at 848.986 kb on - strand at 848.986 kb on - strand at 848.986 kb on - strand at 849.030 kb on + strand, within HGI48_RS04010 at 849.030 kb on + strand, within HGI48_RS04010 at 849.073 kb on + strand, within HGI48_RS04010 at 849.138 kb on + strand at 849.148 kb on + strand, within HGI48_RS04010 at 849.148 kb on + strand, within HGI48_RS04010 at 849.148 kb on + strand at 849.148 kb on + strand, within HGI48_RS04010 at 849.149 kb on - strand, within HGI48_RS04010 at 849.149 kb on - strand, within HGI48_RS04010 at 849.149 kb on - strand, within HGI48_RS04010 at 849.190 kb on + strand, within HGI48_RS04010 at 849.215 kb on - strand, within HGI48_RS04010 at 849.249 kb on + strand, within HGI48_RS04010 at 849.250 kb on - strand, within HGI48_RS04010 at 849.304 kb on + strand, within HGI48_RS04010 at 849.304 kb on + strand, within HGI48_RS04010 at 849.304 kb on + strand, within HGI48_RS04010 at 849.305 kb on - strand, within HGI48_RS04010 at 849.305 kb on - strand, within HGI48_RS04010 at 849.305 kb on - strand, within HGI48_RS04010 at 849.305 kb on - strand, within HGI48_RS04010 at 849.349 kb on + strand at 849.352 kb on + strand at 849.352 kb on + strand at 849.353 kb on - strand at 849.353 kb on - strand at 849.383 kb on + strand at 849.383 kb on + strand at 849.383 kb on + strand at 849.384 kb on - strand at 849.384 kb on - strand at 849.409 kb on + strand at 849.426 kb on + strand at 849.426 kb on + strand at 849.427 kb on - strand at 849.442 kb on + strand at 849.443 kb on - strand at 849.467 kb on + strand at 849.467 kb on + strand at 849.468 kb on - strand at 849.468 kb on - strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.515 kb on + strand at 849.516 kb on - strand at 849.516 kb on - strand at 849.516 kb on - strand at 849.559 kb on - strand at 849.572 kb on + strand at 849.572 kb on + strand at 849.573 kb on - strand at 849.607 kb on + strand at 849.607 kb on + strand at 849.608 kb on - strand at 849.608 kb on - strand at 849.865 kb on + strand, within HGI48_RS04015 at 849.922 kb on + strand, within HGI48_RS04015 at 849.922 kb on + strand, within HGI48_RS04015 at 849.923 kb on - strand, within HGI48_RS04015 at 850.110 kb on - strand, within HGI48_RS04015 at 850.151 kb on - strand, within HGI48_RS04015 at 850.415 kb on + strand, within HGI48_RS04015 at 850.415 kb on + strand, within HGI48_RS04015 at 850.415 kb on + strand at 850.416 kb on - strand, within HGI48_RS04015 at 850.447 kb on + strand, within HGI48_RS04015 at 850.447 kb on + strand, within HGI48_RS04015 at 850.447 kb on + strand, within HGI48_RS04015 at 850.447 kb on + strand, within HGI48_RS04015 at 850.447 kb on + strand at 850.447 kb on + strand, within HGI48_RS04015 at 850.447 kb on + strand at 850.447 kb on + strand, within HGI48_RS04015 at 850.447 kb on + strand, within HGI48_RS04015 at 850.447 kb on + strand, within HGI48_RS04015 at 850.448 kb on - strand, within HGI48_RS04015 at 850.448 kb on - strand, within HGI48_RS04015 at 850.448 kb on - strand, within HGI48_RS04015 at 850.448 kb on - strand, within HGI48_RS04015 at 850.448 kb on - strand, within HGI48_RS04015 at 850.448 kb on - strand, within HGI48_RS04015 at 850.448 kb on - strand, within HGI48_RS04015 at 850.922 kb on + strand, within HGI48_RS04015 at 850.922 kb on + strand, within HGI48_RS04015 at 850.923 kb on - strand, within HGI48_RS04015 at 850.923 kb on - strand, within HGI48_RS04015 at 851.026 kb on + strand, within HGI48_RS04015 at 851.059 kb on + strand, within HGI48_RS04015 at 851.075 kb on + strand, within HGI48_RS04015 at 851.075 kb on + strand at 851.075 kb on + strand, within HGI48_RS04015 at 851.075 kb on + strand, within HGI48_RS04015 at 851.075 kb on + strand, within HGI48_RS04015 at 851.075 kb on + strand, within HGI48_RS04015 at 851.075 kb on + strand, within HGI48_RS04015 at 851.075 kb on + strand, within HGI48_RS04015 at 851.075 kb on + strand, within HGI48_RS04015 at 851.076 kb on - strand, within HGI48_RS04015 at 851.076 kb on - strand, within HGI48_RS04015 at 851.076 kb on - strand, within HGI48_RS04015 at 851.076 kb on - strand, within HGI48_RS04015 at 851.198 kb on + strand, within HGI48_RS04015 at 851.246 kb on + strand, within HGI48_RS04015 at 851.247 kb on - strand, within HGI48_RS04015 at 851.247 kb on - strand, within HGI48_RS04015 at 851.335 kb on + strand, within HGI48_RS04015 at 851.335 kb on + strand at 851.488 kb on + strand at 851.920 kb on - strand at 852.001 kb on + strand at 852.001 kb on + strand at 852.002 kb on - strand at 852.090 kb on + strand, within HGI48_RS04020 at 852.189 kb on - strand, within HGI48_RS04020 at 852.189 kb on - strand, within HGI48_RS04020 at 852.204 kb on - strand, within HGI48_RS04020 at 852.234 kb on + strand, within HGI48_RS04020 at 852.234 kb on + strand at 852.234 kb on + strand, within HGI48_RS04020 at 852.235 kb on - strand, within HGI48_RS04020 at 852.465 kb on + strand, within HGI48_RS04020 at 852.465 kb on + strand, within HGI48_RS04020 at 852.465 kb on + strand, within HGI48_RS04020 at 852.465 kb on + strand at 852.466 kb on - strand, within HGI48_RS04020 at 852.466 kb on - strand, within HGI48_RS04020 at 852.466 kb on - strand, within HGI48_RS04020 at 852.466 kb on - strand, within HGI48_RS04020
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 848,599 + HGI48_RS04005 0.53 -1.6 848,599 + HGI48_RS04005 0.53 +1.0 848,599 + HGI48_RS04005 0.53 +2.0 848,599 + HGI48_RS04005 0.53 -0.4 848,599 + HGI48_RS04005 0.53 -1.0 848,600 - HGI48_RS04005 0.54 -3.2 848,600 - HGI48_RS04005 0.54 -0.3 848,600 - HGI48_RS04005 0.54 +0.6 848,600 - HGI48_RS04005 0.54 -1.0 848,715 + HGI48_RS04005 0.72 +0.2 848,882 + -0.6 848,882 + +1.2 848,883 - -0.4 848,901 - -2.3 848,952 - +0.0 848,960 + -0.3 848,960 + -1.0 848,961 - +0.3 848,974 + -0.4 848,975 - -1.0 848,985 + +0.0 848,985 + -0.3 848,986 - +0.6 848,986 - -1.0 848,986 - -0.2 848,986 - -0.8 849,030 + HGI48_RS04010 0.13 +0.0 849,030 + HGI48_RS04010 0.13 -0.6 849,073 + HGI48_RS04010 0.23 +1.4 849,138 + +2.6 849,148 + HGI48_RS04010 0.42 +0.2 849,148 + HGI48_RS04010 0.42 -0.3 849,148 + -0.6 849,148 + HGI48_RS04010 0.42 +1.3 849,149 - HGI48_RS04010 0.42 -0.3 849,149 - HGI48_RS04010 0.42 +0.1 849,149 - HGI48_RS04010 0.42 -1.6 849,190 + HGI48_RS04010 0.52 -1.3 849,215 - HGI48_RS04010 0.58 -1.0 849,249 + HGI48_RS04010 0.66 -1.8 849,250 - HGI48_RS04010 0.67 +0.7 849,304 + HGI48_RS04010 0.80 -1.0 849,304 + HGI48_RS04010 0.80 +1.0 849,304 + HGI48_RS04010 0.80 +1.3 849,305 - HGI48_RS04010 0.80 -1.0 849,305 - HGI48_RS04010 0.80 -0.6 849,305 - HGI48_RS04010 0.80 -2.0 849,305 - HGI48_RS04010 0.80 -1.3 849,349 + +1.2 849,352 + +1.6 849,352 + -1.6 849,353 - +0.0 849,353 - -1.8 849,383 + +2.6 849,383 + +1.8 849,383 + +0.7 849,384 - +1.0 849,384 - +0.1 849,409 + +0.6 849,426 + +0.8 849,426 + -1.8 849,427 - -2.3 849,442 + +1.0 849,443 - -0.6 849,467 + -0.6 849,467 + -2.7 849,468 - +0.1 849,468 - -0.6 849,485 + -1.3 849,485 + -1.3 849,485 + +0.6 849,486 - -0.5 849,486 - -1.1 849,515 + -0.3 849,516 - -1.0 849,516 - +1.5 849,516 - -1.4 849,559 - -0.2 849,572 + +2.2 849,572 + -0.2 849,573 - -0.1 849,607 + +1.0 849,607 + +0.1 849,608 - +0.4 849,608 - +1.3 849,865 + HGI48_RS04015 0.14 +0.4 849,922 + HGI48_RS04015 0.17 +2.0 849,922 + HGI48_RS04015 0.17 -1.0 849,923 - HGI48_RS04015 0.17 +0.8 850,110 - HGI48_RS04015 0.27 +1.2 850,151 - HGI48_RS04015 0.29 -2.1 850,415 + HGI48_RS04015 0.42 +1.0 850,415 + HGI48_RS04015 0.42 -2.6 850,415 + +0.0 850,416 - HGI48_RS04015 0.42 +0.2 850,447 + HGI48_RS04015 0.44 -0.4 850,447 + HGI48_RS04015 0.44 -0.3 850,447 + HGI48_RS04015 0.44 -1.6 850,447 + HGI48_RS04015 0.44 -2.0 850,447 + +0.4 850,447 + HGI48_RS04015 0.44 -0.1 850,447 + -0.6 850,447 + HGI48_RS04015 0.44 +0.7 850,447 + HGI48_RS04015 0.44 -0.3 850,447 + HGI48_RS04015 0.44 -1.6 850,448 - HGI48_RS04015 0.44 +0.2 850,448 - HGI48_RS04015 0.44 +1.3 850,448 - HGI48_RS04015 0.44 -1.6 850,448 - HGI48_RS04015 0.44 -1.0 850,448 - HGI48_RS04015 0.44 +0.0 850,448 - HGI48_RS04015 0.44 -0.8 850,448 - HGI48_RS04015 0.44 +2.0 850,922 + HGI48_RS04015 0.67 +0.0 850,922 + HGI48_RS04015 0.67 +2.6 850,923 - HGI48_RS04015 0.67 +0.0 850,923 - HGI48_RS04015 0.67 -0.6 851,026 + HGI48_RS04015 0.73 +3.7 851,059 + HGI48_RS04015 0.74 +1.9 851,075 + HGI48_RS04015 0.75 +1.0 851,075 + +2.2 851,075 + HGI48_RS04015 0.75 +1.1 851,075 + HGI48_RS04015 0.75 -0.7 851,075 + HGI48_RS04015 0.75 +3.1 851,075 + HGI48_RS04015 0.75 -1.0 851,075 + HGI48_RS04015 0.75 -1.3 851,075 + HGI48_RS04015 0.75 -2.4 851,075 + HGI48_RS04015 0.75 +0.5 851,076 - HGI48_RS04015 0.75 +0.2 851,076 - HGI48_RS04015 0.75 -2.3 851,076 - HGI48_RS04015 0.75 +0.7 851,076 - HGI48_RS04015 0.75 -1.6 851,198 + HGI48_RS04015 0.81 -0.6 851,246 + HGI48_RS04015 0.84 +1.8 851,247 - HGI48_RS04015 0.84 -0.1 851,247 - HGI48_RS04015 0.84 -0.1 851,335 + HGI48_RS04015 0.88 +0.3 851,335 + -0.6 851,488 + +0.0 851,920 - -1.8 852,001 + -1.0 852,001 + -2.3 852,002 - +1.0 852,090 + HGI48_RS04020 0.12 +1.3 852,189 - HGI48_RS04020 0.29 +0.3 852,189 - HGI48_RS04020 0.29 +1.2 852,204 - HGI48_RS04020 0.31 +1.0 852,234 + HGI48_RS04020 0.36 -0.4 852,234 + -0.6 852,234 + HGI48_RS04020 0.36 -3.3 852,235 - HGI48_RS04020 0.37 -2.1 852,465 + HGI48_RS04020 0.76 +0.5 852,465 + HGI48_RS04020 0.76 -2.4 852,465 + HGI48_RS04020 0.76 +0.6 852,465 + -0.6 852,466 - HGI48_RS04020 0.76 -3.6 852,466 - HGI48_RS04020 0.76 -1.3 852,466 - HGI48_RS04020 0.76 -1.3 852,466 - HGI48_RS04020 0.76 +2.4
Or see this region's nucleotide sequence