Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03170 and HGI48_RS03175 are separated by 266 nucleotides HGI48_RS03175 and HGI48_RS03180 are separated by 103 nucleotides
HGI48_RS03170: HGI48_RS03170 - DMT family transporter, at 669,913 to 670,857
_RS03170
HGI48_RS03175: HGI48_RS03175 - Obg family GTPase CgtA, at 671,124 to 672,299
_RS03175
HGI48_RS03180: HGI48_RS03180 - serine-type D-Ala-D-Ala carboxypeptidase, at 672,403 to 673,836
_RS03180
Position (kb) 671
672
673 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 670.179 kb on + strand at 670.179 kb on + strand, within HGI48_RS03170 at 670.180 kb on - strand at 670.180 kb on - strand, within HGI48_RS03170 at 670.298 kb on + strand, within HGI48_RS03170 at 670.298 kb on + strand, within HGI48_RS03170 at 670.299 kb on - strand, within HGI48_RS03170 at 670.299 kb on - strand, within HGI48_RS03170 at 670.347 kb on + strand, within HGI48_RS03170 at 670.348 kb on - strand, within HGI48_RS03170 at 670.381 kb on + strand, within HGI48_RS03170 at 670.432 kb on + strand, within HGI48_RS03170 at 670.495 kb on + strand, within HGI48_RS03170 at 670.495 kb on + strand, within HGI48_RS03170 at 670.496 kb on - strand, within HGI48_RS03170 at 670.496 kb on - strand, within HGI48_RS03170 at 670.496 kb on - strand, within HGI48_RS03170 at 670.496 kb on - strand, within HGI48_RS03170 at 670.498 kb on - strand at 670.498 kb on - strand, within HGI48_RS03170 at 670.498 kb on - strand, within HGI48_RS03170 at 670.509 kb on - strand, within HGI48_RS03170 at 670.509 kb on - strand, within HGI48_RS03170 at 670.509 kb on - strand, within HGI48_RS03170 at 670.515 kb on + strand, within HGI48_RS03170 at 670.516 kb on - strand, within HGI48_RS03170 at 670.516 kb on - strand, within HGI48_RS03170 at 670.557 kb on + strand, within HGI48_RS03170 at 670.558 kb on - strand, within HGI48_RS03170 at 670.578 kb on - strand, within HGI48_RS03170 at 670.659 kb on + strand, within HGI48_RS03170 at 670.660 kb on - strand, within HGI48_RS03170 at 670.668 kb on + strand, within HGI48_RS03170 at 670.669 kb on - strand, within HGI48_RS03170 at 670.669 kb on - strand, within HGI48_RS03170 at 670.673 kb on + strand, within HGI48_RS03170 at 670.674 kb on - strand, within HGI48_RS03170 at 670.687 kb on - strand, within HGI48_RS03170 at 670.731 kb on - strand, within HGI48_RS03170 at 670.762 kb on + strand, within HGI48_RS03170 at 670.830 kb on - strand at 670.830 kb on - strand at 670.859 kb on + strand at 670.860 kb on - strand at 670.864 kb on - strand at 670.869 kb on + strand at 670.869 kb on + strand at 670.869 kb on + strand at 670.870 kb on - strand at 670.870 kb on - strand at 670.870 kb on - strand at 670.870 kb on - strand at 670.870 kb on - strand at 670.922 kb on - strand at 670.927 kb on + strand at 670.958 kb on + strand at 670.958 kb on + strand at 671.020 kb on + strand at 671.020 kb on + strand at 671.020 kb on + strand at 671.020 kb on + strand at 671.020 kb on + strand at 671.020 kb on + strand at 671.020 kb on + strand at 671.020 kb on + strand at 672.106 kb on + strand, within HGI48_RS03175 at 672.106 kb on + strand at 672.107 kb on - strand, within HGI48_RS03175 at 672.123 kb on - strand, within HGI48_RS03175 at 672.193 kb on - strand at 672.346 kb on + strand at 672.347 kb on - strand at 672.357 kb on - strand at 672.418 kb on + strand at 672.418 kb on + strand at 672.418 kb on + strand at 672.418 kb on + strand at 672.418 kb on + strand at 672.419 kb on - strand at 672.419 kb on - strand at 672.419 kb on - strand at 672.419 kb on - strand at 672.419 kb on - strand at 672.419 kb on - strand at 672.419 kb on - strand at 672.420 kb on + strand at 672.420 kb on + strand at 672.420 kb on + strand at 672.420 kb on + strand at 672.420 kb on + strand at 672.420 kb on + strand at 672.421 kb on - strand at 672.421 kb on - strand at 672.421 kb on - strand at 672.421 kb on - strand at 672.495 kb on - strand at 672.506 kb on + strand at 672.506 kb on + strand at 672.506 kb on + strand at 672.506 kb on + strand at 672.507 kb on - strand at 672.507 kb on - strand at 672.507 kb on - strand at 672.547 kb on - strand, within HGI48_RS03180 at 672.547 kb on - strand, within HGI48_RS03180 at 672.547 kb on - strand, within HGI48_RS03180 at 672.563 kb on + strand, within HGI48_RS03180 at 672.563 kb on + strand, within HGI48_RS03180 at 672.564 kb on - strand, within HGI48_RS03180 at 672.709 kb on - strand at 672.709 kb on - strand, within HGI48_RS03180 at 672.711 kb on - strand, within HGI48_RS03180 at 672.711 kb on - strand at 672.711 kb on - strand, within HGI48_RS03180 at 672.711 kb on - strand at 672.711 kb on - strand at 672.711 kb on - strand, within HGI48_RS03180 at 672.750 kb on + strand, within HGI48_RS03180 at 672.750 kb on + strand, within HGI48_RS03180 at 672.750 kb on + strand, within HGI48_RS03180 at 672.750 kb on + strand, within HGI48_RS03180 at 672.751 kb on - strand, within HGI48_RS03180 at 672.786 kb on + strand, within HGI48_RS03180 at 672.787 kb on - strand, within HGI48_RS03180 at 672.886 kb on - strand, within HGI48_RS03180 at 672.886 kb on - strand, within HGI48_RS03180 at 673.076 kb on + strand at 673.077 kb on - strand, within HGI48_RS03180 at 673.093 kb on + strand, within HGI48_RS03180 at 673.094 kb on - strand at 673.150 kb on - strand, within HGI48_RS03180 at 673.191 kb on - strand, within HGI48_RS03180 at 673.254 kb on - strand, within HGI48_RS03180
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 670,179 + +0.1 670,179 + HGI48_RS03170 0.28 -1.0 670,180 - +1.8 670,180 - HGI48_RS03170 0.28 +1.9 670,298 + HGI48_RS03170 0.41 +2.1 670,298 + HGI48_RS03170 0.41 -1.7 670,299 - HGI48_RS03170 0.41 -0.0 670,299 - HGI48_RS03170 0.41 +1.7 670,347 + HGI48_RS03170 0.46 -0.9 670,348 - HGI48_RS03170 0.46 -0.6 670,381 + HGI48_RS03170 0.50 +1.5 670,432 + HGI48_RS03170 0.55 -0.1 670,495 + HGI48_RS03170 0.62 -1.9 670,495 + HGI48_RS03170 0.62 -2.8 670,496 - HGI48_RS03170 0.62 -1.7 670,496 - HGI48_RS03170 0.62 -1.9 670,496 - HGI48_RS03170 0.62 -0.9 670,496 - HGI48_RS03170 0.62 -0.9 670,498 - +1.5 670,498 - HGI48_RS03170 0.62 -1.7 670,498 - HGI48_RS03170 0.62 +0.4 670,509 - HGI48_RS03170 0.63 -1.5 670,509 - HGI48_RS03170 0.63 -1.5 670,509 - HGI48_RS03170 0.63 -1.3 670,515 + HGI48_RS03170 0.64 -1.7 670,516 - HGI48_RS03170 0.64 -0.9 670,516 - HGI48_RS03170 0.64 -1.1 670,557 + HGI48_RS03170 0.68 -0.5 670,558 - HGI48_RS03170 0.68 +0.1 670,578 - HGI48_RS03170 0.70 +0.7 670,659 + HGI48_RS03170 0.79 -1.3 670,660 - HGI48_RS03170 0.79 -1.3 670,668 + HGI48_RS03170 0.80 -0.9 670,669 - HGI48_RS03170 0.80 +2.2 670,669 - HGI48_RS03170 0.80 -1.1 670,673 + HGI48_RS03170 0.80 -2.1 670,674 - HGI48_RS03170 0.81 -0.1 670,687 - HGI48_RS03170 0.82 +0.1 670,731 - HGI48_RS03170 0.87 +1.1 670,762 + HGI48_RS03170 0.90 -1.3 670,830 - +4.2 670,830 - +0.5 670,859 + +2.4 670,860 - +0.3 670,864 - +0.4 670,869 + -2.8 670,869 + -1.7 670,869 + +0.3 670,870 - -0.5 670,870 - -0.3 670,870 - -2.8 670,870 - -2.9 670,870 - +2.1 670,922 - +1.6 670,927 + +0.1 670,958 + +1.7 670,958 + +0.3 671,020 + -0.8 671,020 + -1.9 671,020 + -1.7 671,020 + -0.1 671,020 + +2.1 671,020 + -2.5 671,020 + -2.3 671,020 + -2.5 672,106 + HGI48_RS03175 0.84 -1.3 672,106 + -0.5 672,107 - HGI48_RS03175 0.84 +1.1 672,123 - HGI48_RS03175 0.85 -1.3 672,193 - +0.5 672,346 + -0.3 672,347 - -1.7 672,357 - +1.1 672,418 + -0.3 672,418 + -1.3 672,418 + +1.2 672,418 + +0.5 672,418 + -1.3 672,419 - +2.3 672,419 - -0.5 672,419 - +1.4 672,419 - -0.6 672,419 - +1.3 672,419 - -0.5 672,419 - +0.8 672,420 + +0.2 672,420 + -0.9 672,420 + +2.6 672,420 + +0.1 672,420 + -1.7 672,420 + -1.7 672,421 - +0.2 672,421 - -2.3 672,421 - -1.5 672,421 - +1.1 672,495 - +0.5 672,506 + +0.3 672,506 + +1.4 672,506 + +1.0 672,506 + +1.7 672,507 - +2.2 672,507 - -1.1 672,507 - +0.6 672,547 - HGI48_RS03180 0.10 +0.8 672,547 - HGI48_RS03180 0.10 +0.7 672,547 - HGI48_RS03180 0.10 +0.6 672,563 + HGI48_RS03180 0.11 -0.8 672,563 + HGI48_RS03180 0.11 -1.5 672,564 - HGI48_RS03180 0.11 +0.1 672,709 - +1.1 672,709 - HGI48_RS03180 0.21 +0.3 672,711 - HGI48_RS03180 0.21 +0.5 672,711 - -0.5 672,711 - HGI48_RS03180 0.21 +3.2 672,711 - -0.5 672,711 - +2.1 672,711 - HGI48_RS03180 0.21 +0.2 672,750 + HGI48_RS03180 0.24 -0.5 672,750 + HGI48_RS03180 0.24 -1.3 672,750 + HGI48_RS03180 0.24 +0.3 672,750 + HGI48_RS03180 0.24 +1.6 672,751 - HGI48_RS03180 0.24 +1.9 672,786 + HGI48_RS03180 0.27 -1.3 672,787 - HGI48_RS03180 0.27 -1.0 672,886 - HGI48_RS03180 0.34 -0.4 672,886 - HGI48_RS03180 0.34 -1.5 673,076 + +2.7 673,077 - HGI48_RS03180 0.47 -0.5 673,093 + HGI48_RS03180 0.48 -1.3 673,094 - +1.7 673,150 - HGI48_RS03180 0.52 -0.2 673,191 - HGI48_RS03180 0.55 -2.4 673,254 - HGI48_RS03180 0.59 +1.1
Or see this region's nucleotide sequence