Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS02025

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS02020 and HGI48_RS02025 overlap by 17 nucleotidesHGI48_RS02025 and HGI48_RS02030 are separated by 166 nucleotides HGI48_RS02020: HGI48_RS02020 - type II toxin-antitoxin system RelE/ParE family toxin, at 445,182 to 445,542 _RS02020 HGI48_RS02025: HGI48_RS02025 - DNA-binding transcriptional regulator, at 445,526 to 445,849 _RS02025 HGI48_RS02030: HGI48_RS02030 - SIR2 family protein, at 446,016 to 447,320 _RS02030 Position (kb) 445 446Strain fitness (log2 ratio) -2 -1 0 1 2at 444.539 kb on + strandat 444.539 kb on + strandat 444.539 kb on + strandat 444.540 kb on - strandat 444.610 kb on + strandat 444.610 kb on + strandat 444.610 kb on + strandat 444.610 kb on + strandat 444.611 kb on - strandat 444.611 kb on - strandat 444.611 kb on - strandat 444.654 kb on + strandat 444.654 kb on + strandat 444.654 kb on + strandat 444.654 kb on + strandat 444.654 kb on + strandat 444.654 kb on + strandat 444.655 kb on - strandat 444.655 kb on - strandat 444.655 kb on - strandat 444.655 kb on - strandat 444.655 kb on - strandat 444.655 kb on - strandat 444.655 kb on - strandat 444.678 kb on + strandat 444.678 kb on + strandat 444.678 kb on + strandat 444.679 kb on - strandat 444.679 kb on - strandat 444.794 kb on + strandat 444.795 kb on - strandat 444.814 kb on + strandat 444.838 kb on + strandat 444.838 kb on + strandat 444.838 kb on + strandat 444.839 kb on - strandat 444.839 kb on - strandat 444.839 kb on - strandat 444.839 kb on - strandat 444.971 kb on + strandat 444.972 kb on - strandat 445.020 kb on + strandat 445.154 kb on - strandat 445.156 kb on - strandat 445.159 kb on + strandat 445.159 kb on + strandat 445.160 kb on - strandat 445.160 kb on - strandat 445.190 kb on - strandat 445.190 kb on - strandat 445.220 kb on + strand, within HGI48_RS02020at 445.249 kb on + strand, within HGI48_RS02020at 445.250 kb on - strand, within HGI48_RS02020at 445.259 kb on + strand, within HGI48_RS02020at 445.259 kb on + strand, within HGI48_RS02020at 445.259 kb on + strand, within HGI48_RS02020at 445.259 kb on + strand, within HGI48_RS02020at 445.259 kb on + strand, within HGI48_RS02020at 445.260 kb on - strandat 445.260 kb on - strand, within HGI48_RS02020at 445.280 kb on + strand, within HGI48_RS02020at 445.280 kb on + strandat 445.281 kb on - strand, within HGI48_RS02020at 445.281 kb on - strand, within HGI48_RS02020at 445.404 kb on + strand, within HGI48_RS02020at 445.420 kb on - strand, within HGI48_RS02020at 445.459 kb on + strand, within HGI48_RS02020at 445.497 kb on + strandat 445.498 kb on - strand, within HGI48_RS02020at 445.503 kb on + strand, within HGI48_RS02020at 445.648 kb on + strandat 445.739 kb on - strand, within HGI48_RS02025at 445.739 kb on - strand, within HGI48_RS02025at 445.776 kb on + strand, within HGI48_RS02025at 445.777 kb on - strand, within HGI48_RS02025at 445.777 kb on - strand, within HGI48_RS02025at 445.777 kb on - strand, within HGI48_RS02025at 445.846 kb on - strandat 445.846 kb on - strandat 445.848 kb on - strandat 445.873 kb on + strandat 445.918 kb on + strandat 446.014 kb on - strandat 446.037 kb on + strandat 446.038 kb on - strandat 446.162 kb on - strand, within HGI48_RS02030at 446.283 kb on - strandat 446.299 kb on + strand, within HGI48_RS02030at 446.299 kb on + strandat 446.299 kb on + strand, within HGI48_RS02030at 446.300 kb on - strandat 446.337 kb on - strand, within HGI48_RS02030at 446.337 kb on - strand, within HGI48_RS02030at 446.337 kb on - strandat 446.408 kb on - strand, within HGI48_RS02030at 446.408 kb on - strand, within HGI48_RS02030at 446.478 kb on + strand, within HGI48_RS02030at 446.536 kb on + strand, within HGI48_RS02030at 446.593 kb on - strand, within HGI48_RS02030at 446.594 kb on + strand, within HGI48_RS02030at 446.594 kb on + strandat 446.595 kb on - strand, within HGI48_RS02030at 446.595 kb on - strand, within HGI48_RS02030at 446.654 kb on + strand, within HGI48_RS02030at 446.804 kb on + strand, within HGI48_RS02030at 446.826 kb on + strand, within HGI48_RS02030at 446.828 kb on + strand, within HGI48_RS02030

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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444,539 + -1.7
444,539 + -0.9
444,539 + -2.7
444,540 - +0.1
444,610 + -0.1
444,610 + +1.4
444,610 + -1.4
444,610 + +2.3
444,611 - -0.9
444,611 - +0.7
444,611 - -0.1
444,654 + +0.1
444,654 + +0.6
444,654 + +0.1
444,654 + -1.2
444,654 + -0.2
444,654 + +2.3
444,655 - +2.3
444,655 - +1.1
444,655 - -2.0
444,655 - -0.4
444,655 - +2.3
444,655 - -0.4
444,655 - +2.5
444,678 + -1.2
444,678 + -0.6
444,678 + +0.1
444,679 - +1.0
444,679 - -1.4
444,794 + -1.2
444,795 - -0.4
444,814 + -0.0
444,838 + +0.4
444,838 + +0.5
444,838 + +2.2
444,839 - +2.7
444,839 - +1.1
444,839 - +0.3
444,839 - -1.1
444,971 + +1.2
444,972 - +1.0
445,020 + -1.4
445,154 - -0.4
445,156 - +1.5
445,159 + +0.1
445,159 + -2.3
445,160 - +2.6
445,160 - -2.0
445,190 - -1.4
445,190 - -0.4
445,220 + HGI48_RS02020 0.11 +0.8
445,249 + HGI48_RS02020 0.19 +0.8
445,250 - HGI48_RS02020 0.19 -0.9
445,259 + HGI48_RS02020 0.21 -2.4
445,259 + HGI48_RS02020 0.21 +0.2
445,259 + HGI48_RS02020 0.21 -1.2
445,259 + HGI48_RS02020 0.21 -0.1
445,259 + HGI48_RS02020 0.21 +0.8
445,260 - +0.1
445,260 - HGI48_RS02020 0.22 +1.1
445,280 + HGI48_RS02020 0.27 +0.4
445,280 + -0.4
445,281 - HGI48_RS02020 0.27 -0.9
445,281 - HGI48_RS02020 0.27 +2.0
445,404 + HGI48_RS02020 0.61 -2.3
445,420 - HGI48_RS02020 0.66 -2.2
445,459 + HGI48_RS02020 0.77 +0.3
445,497 + +0.6
445,498 - HGI48_RS02020 0.88 -1.7
445,503 + HGI48_RS02020 0.89 -1.2
445,648 + -0.4
445,739 - HGI48_RS02025 0.66 -2.3
445,739 - HGI48_RS02025 0.66 +0.8
445,776 + HGI48_RS02025 0.77 -1.9
445,777 - HGI48_RS02025 0.77 -0.1
445,777 - HGI48_RS02025 0.77 -1.4
445,777 - HGI48_RS02025 0.77 -1.7
445,846 - +2.5
445,846 - -1.4
445,848 - -0.9
445,873 + -0.9
445,918 + -1.9
446,014 - -0.4
446,037 + -2.0
446,038 - +0.9
446,162 - HGI48_RS02030 0.11 +1.0
446,283 - -0.4
446,299 + HGI48_RS02030 0.22 +0.9
446,299 + +2.1
446,299 + HGI48_RS02030 0.22 -1.7
446,300 - +1.1
446,337 - HGI48_RS02030 0.25 -2.2
446,337 - HGI48_RS02030 0.25 +1.4
446,337 - +1.6
446,408 - HGI48_RS02030 0.30 -0.9
446,408 - HGI48_RS02030 0.30 +0.6
446,478 + HGI48_RS02030 0.35 -1.2
446,536 + HGI48_RS02030 0.40 +0.9
446,593 - HGI48_RS02030 0.44 -0.6
446,594 + HGI48_RS02030 0.44 +1.0
446,594 + +1.1
446,595 - HGI48_RS02030 0.44 -1.4
446,595 - HGI48_RS02030 0.44 +1.6
446,654 + HGI48_RS02030 0.49 -1.7
446,804 + HGI48_RS02030 0.60 +1.7
446,826 + HGI48_RS02030 0.62 +0.7
446,828 + HGI48_RS02030 0.62 -0.9

Or see this region's nucleotide sequence