Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS01195

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS01185 and HGI48_RS01190 overlap by 1 nucleotidesHGI48_RS01190 and HGI48_RS01195 are separated by 91 nucleotidesHGI48_RS01195 and HGI48_RS01200 are separated by 311 nucleotidesHGI48_RS01200 and HGI48_RS01205 are separated by 4 nucleotides HGI48_RS01185: HGI48_RS01185 - uroporphyrinogen decarboxylase, at 265,369 to 266,442 _RS01185 HGI48_RS01190: HGI48_RS01190 - deoxyribonuclease V, at 266,442 to 267,116 _RS01190 HGI48_RS01195: HGI48_RS01195 - YjaG family protein, at 267,208 to 267,798 _RS01195 HGI48_RS01200: HGI48_RS01200 - DNA-binding protein HU-alpha, at 268,110 to 268,382 _RS01200 HGI48_RS01205: HGI48_RS01205 - DUF1481 domain-containing protein, at 268,387 to 269,127 _RS01205 Position (kb) 267 268Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 266.422 kb on + strandat 266.448 kb on - strandat 266.507 kb on + strandat 266.507 kb on + strandat 266.507 kb on + strandat 266.507 kb on + strandat 266.508 kb on - strandat 266.508 kb on - strandat 266.625 kb on + strand, within HGI48_RS01190at 266.626 kb on - strandat 266.640 kb on - strand, within HGI48_RS01190at 266.658 kb on + strand, within HGI48_RS01190at 266.658 kb on + strand, within HGI48_RS01190at 266.658 kb on + strand, within HGI48_RS01190at 266.658 kb on + strand, within HGI48_RS01190at 266.658 kb on + strand, within HGI48_RS01190at 266.658 kb on + strand, within HGI48_RS01190at 266.658 kb on + strand, within HGI48_RS01190at 266.658 kb on + strand, within HGI48_RS01190at 266.658 kb on + strand, within HGI48_RS01190at 266.658 kb on + strand, within HGI48_RS01190at 266.658 kb on + strand, within HGI48_RS01190at 266.658 kb on + strand, within HGI48_RS01190at 266.658 kb on + strand, within HGI48_RS01190at 266.658 kb on + strand, within HGI48_RS01190at 266.658 kb on + strand, within HGI48_RS01190at 266.658 kb on + strandat 266.658 kb on + strand, within HGI48_RS01190at 266.658 kb on + strand, within HGI48_RS01190at 266.658 kb on + strand, within HGI48_RS01190at 266.658 kb on + strand, within HGI48_RS01190at 266.658 kb on + strand, within HGI48_RS01190at 266.659 kb on - strand, within HGI48_RS01190at 266.659 kb on - strand, within HGI48_RS01190at 266.659 kb on - strand, within HGI48_RS01190at 266.659 kb on - strand, within HGI48_RS01190at 266.659 kb on - strand, within HGI48_RS01190at 266.659 kb on - strandat 266.659 kb on - strand, within HGI48_RS01190at 266.659 kb on - strand, within HGI48_RS01190at 266.659 kb on - strandat 266.659 kb on - strand, within HGI48_RS01190at 266.659 kb on - strand, within HGI48_RS01190at 266.659 kb on - strand, within HGI48_RS01190at 266.659 kb on - strand, within HGI48_RS01190at 266.659 kb on - strand, within HGI48_RS01190at 266.659 kb on - strand, within HGI48_RS01190at 266.660 kb on + strand, within HGI48_RS01190at 266.660 kb on + strand, within HGI48_RS01190at 266.660 kb on + strand, within HGI48_RS01190at 266.660 kb on + strand, within HGI48_RS01190at 266.661 kb on - strand, within HGI48_RS01190at 266.661 kb on - strand, within HGI48_RS01190at 266.661 kb on - strand, within HGI48_RS01190at 266.661 kb on - strand, within HGI48_RS01190at 267.114 kb on + strandat 267.114 kb on + strandat 267.115 kb on - strandat 267.115 kb on - strandat 267.115 kb on - strandat 267.115 kb on - strandat 267.140 kb on - strandat 267.151 kb on + strandat 267.151 kb on + strandat 267.151 kb on + strandat 267.153 kb on + strandat 267.176 kb on + strandat 267.188 kb on + strandat 267.188 kb on + strandat 267.188 kb on + strandat 267.191 kb on + strandat 267.191 kb on + strandat 267.191 kb on + strandat 267.192 kb on - strandat 267.192 kb on - strandat 267.202 kb on + strandat 267.203 kb on - strandat 267.213 kb on - strandat 267.291 kb on + strand, within HGI48_RS01195at 267.291 kb on + strand, within HGI48_RS01195at 267.292 kb on - strand, within HGI48_RS01195at 267.292 kb on - strand, within HGI48_RS01195at 267.292 kb on - strand, within HGI48_RS01195at 267.292 kb on - strand, within HGI48_RS01195at 267.292 kb on - strand, within HGI48_RS01195at 267.292 kb on - strand, within HGI48_RS01195at 267.292 kb on - strand, within HGI48_RS01195at 267.292 kb on - strand, within HGI48_RS01195at 267.292 kb on - strand, within HGI48_RS01195at 267.292 kb on - strand, within HGI48_RS01195at 267.295 kb on + strand, within HGI48_RS01195at 267.304 kb on + strand, within HGI48_RS01195at 267.304 kb on + strand, within HGI48_RS01195at 267.305 kb on - strand, within HGI48_RS01195at 267.305 kb on - strand, within HGI48_RS01195at 267.308 kb on - strandat 267.358 kb on - strand, within HGI48_RS01195at 267.476 kb on + strand, within HGI48_RS01195at 267.476 kb on + strand, within HGI48_RS01195at 267.732 kb on - strandat 267.790 kb on + strandat 267.804 kb on + strandat 267.816 kb on + strandat 267.816 kb on + strandat 267.817 kb on - strandat 267.817 kb on - strandat 267.839 kb on + strandat 267.868 kb on + strandat 267.923 kb on + strandat 267.923 kb on + strandat 267.938 kb on - strandat 267.984 kb on + strandat 267.984 kb on + strandat 267.992 kb on + strandat 267.992 kb on + strandat 267.992 kb on + strandat 268.040 kb on + strandat 268.040 kb on + strandat 268.040 kb on + strandat 268.040 kb on + strandat 268.041 kb on - strandat 268.381 kb on - strandat 268.394 kb on + strandat 268.395 kb on - strandat 268.395 kb on - strandat 268.494 kb on + strandat 268.494 kb on + strand, within HGI48_RS01205at 268.503 kb on + strand, within HGI48_RS01205at 268.504 kb on - strand, within HGI48_RS01205at 268.504 kb on - strand, within HGI48_RS01205at 268.522 kb on + strand, within HGI48_RS01205at 268.522 kb on + strand, within HGI48_RS01205at 268.569 kb on + strandat 268.569 kb on + strand, within HGI48_RS01205at 268.596 kb on + strand, within HGI48_RS01205at 268.622 kb on + strand, within HGI48_RS01205at 268.693 kb on + strand, within HGI48_RS01205at 268.693 kb on + strandat 268.693 kb on + strand, within HGI48_RS01205at 268.693 kb on + strand, within HGI48_RS01205at 268.693 kb on + strandat 268.694 kb on - strand, within HGI48_RS01205at 268.694 kb on - strand, within HGI48_RS01205at 268.694 kb on - strand, within HGI48_RS01205at 268.694 kb on - strand, within HGI48_RS01205at 268.783 kb on + strand, within HGI48_RS01205at 268.783 kb on + strand, within HGI48_RS01205at 268.783 kb on + strand, within HGI48_RS01205at 268.783 kb on + strand, within HGI48_RS01205at 268.783 kb on + strandat 268.783 kb on + strand, within HGI48_RS01205at 268.783 kb on + strand, within HGI48_RS01205at 268.783 kb on + strand, within HGI48_RS01205at 268.783 kb on + strand, within HGI48_RS01205at 268.783 kb on + strand, within HGI48_RS01205at 268.784 kb on - strand, within HGI48_RS01205at 268.784 kb on - strand, within HGI48_RS01205at 268.784 kb on - strand, within HGI48_RS01205at 268.784 kb on - strand, within HGI48_RS01205at 268.784 kb on - strand, within HGI48_RS01205at 268.784 kb on - strand, within HGI48_RS01205

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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266,422 + -0.1
266,448 - +0.2
266,507 + +0.9
266,507 + -1.4
266,507 + +0.5
266,507 + +0.4
266,508 - +1.8
266,508 - +0.8
266,625 + HGI48_RS01190 0.27 +2.1
266,626 - +3.7
266,640 - HGI48_RS01190 0.29 -1.6
266,658 + HGI48_RS01190 0.32 +0.5
266,658 + HGI48_RS01190 0.32 -0.4
266,658 + HGI48_RS01190 0.32 +0.0
266,658 + HGI48_RS01190 0.32 +2.1
266,658 + HGI48_RS01190 0.32 -0.5
266,658 + HGI48_RS01190 0.32 +3.1
266,658 + HGI48_RS01190 0.32 -1.8
266,658 + HGI48_RS01190 0.32 +0.5
266,658 + HGI48_RS01190 0.32 +1.6
266,658 + HGI48_RS01190 0.32 -2.1
266,658 + HGI48_RS01190 0.32 -2.3
266,658 + HGI48_RS01190 0.32 +1.8
266,658 + HGI48_RS01190 0.32 +0.6
266,658 + HGI48_RS01190 0.32 +0.2
266,658 + HGI48_RS01190 0.32 +0.8
266,658 + +3.0
266,658 + HGI48_RS01190 0.32 -2.3
266,658 + HGI48_RS01190 0.32 +2.2
266,658 + HGI48_RS01190 0.32 -0.7
266,658 + HGI48_RS01190 0.32 -0.3
266,658 + HGI48_RS01190 0.32 -0.2
266,659 - HGI48_RS01190 0.32 -0.5
266,659 - HGI48_RS01190 0.32 +0.4
266,659 - HGI48_RS01190 0.32 +0.7
266,659 - HGI48_RS01190 0.32 -2.8
266,659 - HGI48_RS01190 0.32 +0.2
266,659 - +1.8
266,659 - HGI48_RS01190 0.32 +1.2
266,659 - HGI48_RS01190 0.32 -2.6
266,659 - -0.4
266,659 - HGI48_RS01190 0.32 -2.3
266,659 - HGI48_RS01190 0.32 -0.8
266,659 - HGI48_RS01190 0.32 +0.8
266,659 - HGI48_RS01190 0.32 +2.2
266,659 - HGI48_RS01190 0.32 +0.2
266,659 - HGI48_RS01190 0.32 -2.8
266,660 + HGI48_RS01190 0.32 +1.4
266,660 + HGI48_RS01190 0.32 -2.1
266,660 + HGI48_RS01190 0.32 +1.2
266,660 + HGI48_RS01190 0.32 +1.6
266,661 - HGI48_RS01190 0.32 +0.4
266,661 - HGI48_RS01190 0.32 -1.1
266,661 - HGI48_RS01190 0.32 +2.3
266,661 - HGI48_RS01190 0.32 -1.8
267,114 + +1.2
267,114 + +0.2
267,115 - +0.4
267,115 - +1.3
267,115 - -1.1
267,115 - -1.8
267,140 - +1.8
267,151 + +0.2
267,151 + -1.8
267,151 + -1.4
267,153 + +1.5
267,176 + +0.2
267,188 + -0.1
267,188 + -0.7
267,188 + -0.4
267,191 + -2.4
267,191 + -0.8
267,191 + -0.4
267,192 - +1.4
267,192 - -0.8
267,202 + +0.8
267,203 - -1.1
267,213 - +0.2
267,291 + HGI48_RS01195 0.14 +0.8
267,291 + HGI48_RS01195 0.14 +1.5
267,292 - HGI48_RS01195 0.14 -1.1
267,292 - HGI48_RS01195 0.14 -1.8
267,292 - HGI48_RS01195 0.14 -1.4
267,292 - HGI48_RS01195 0.14 +1.2
267,292 - HGI48_RS01195 0.14 -2.0
267,292 - HGI48_RS01195 0.14 -1.4
267,292 - HGI48_RS01195 0.14 -1.4
267,292 - HGI48_RS01195 0.14 +0.5
267,292 - HGI48_RS01195 0.14 +1.2
267,292 - HGI48_RS01195 0.14 +1.5
267,295 + HGI48_RS01195 0.15 -1.4
267,304 + HGI48_RS01195 0.16 +0.1
267,304 + HGI48_RS01195 0.16 +1.2
267,305 - HGI48_RS01195 0.16 -1.4
267,305 - HGI48_RS01195 0.16 +0.1
267,308 - +1.9
267,358 - HGI48_RS01195 0.25 -0.4
267,476 + HGI48_RS01195 0.45 -0.8
267,476 + HGI48_RS01195 0.45 -0.9
267,732 - +1.2
267,790 + +0.6
267,804 + +0.4
267,816 + +0.0
267,816 + -1.8
267,817 - +3.0
267,817 - +2.5
267,839 + -0.8
267,868 + -0.4
267,923 + -0.8
267,923 + +0.2
267,938 - +0.2
267,984 + -0.4
267,984 + -0.4
267,992 + -1.0
267,992 + +1.2
267,992 + -0.4
268,040 + -0.5
268,040 + +0.0
268,040 + +3.3
268,040 + +2.5
268,041 - -2.1
268,381 - +1.2
268,394 + +1.0
268,395 - +0.6
268,395 - +0.7
268,494 + +3.2
268,494 + HGI48_RS01205 0.14 -1.8
268,503 + HGI48_RS01205 0.16 +0.9
268,504 - HGI48_RS01205 0.16 -1.1
268,504 - HGI48_RS01205 0.16 -0.8
268,522 + HGI48_RS01205 0.18 -1.0
268,522 + HGI48_RS01205 0.18 -1.1
268,569 + +1.6
268,569 + HGI48_RS01205 0.25 +0.4
268,596 + HGI48_RS01205 0.28 +0.8
268,622 + HGI48_RS01205 0.32 +1.4
268,693 + HGI48_RS01205 0.41 +2.4
268,693 + +1.2
268,693 + HGI48_RS01205 0.41 -2.0
268,693 + HGI48_RS01205 0.41 +1.5
268,693 + -0.4
268,694 - HGI48_RS01205 0.41 -1.1
268,694 - HGI48_RS01205 0.41 -0.1
268,694 - HGI48_RS01205 0.41 -0.3
268,694 - HGI48_RS01205 0.41 -0.8
268,783 + HGI48_RS01205 0.53 +1.0
268,783 + HGI48_RS01205 0.53 -1.1
268,783 + HGI48_RS01205 0.53 +0.7
268,783 + HGI48_RS01205 0.53 -3.0
268,783 + -0.4
268,783 + HGI48_RS01205 0.53 +2.3
268,783 + HGI48_RS01205 0.53 -1.4
268,783 + HGI48_RS01205 0.53 -1.8
268,783 + HGI48_RS01205 0.53 +1.8
268,783 + HGI48_RS01205 0.53 +0.4
268,784 - HGI48_RS01205 0.54 +2.1
268,784 - HGI48_RS01205 0.54 +2.6
268,784 - HGI48_RS01205 0.54 +0.7
268,784 - HGI48_RS01205 0.54 +0.1
268,784 - HGI48_RS01205 0.54 +1.2
268,784 - HGI48_RS01205 0.54 -1.8

Or see this region's nucleotide sequence