Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS01030

Experiment: Atlantic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHGI48_RS01020 and HGI48_RS01025 overlap by 4 nucleotidesHGI48_RS01025 and HGI48_RS01030 are separated by 26 nucleotidesHGI48_RS01030 and HGI48_RS01035 are separated by 683 nucleotidesHGI48_RS01035 and HGI48_RS01040 are separated by 16 nucleotidesHGI48_RS01040 and HGI48_RS01045 are separated by 135 nucleotides HGI48_RS01020: HGI48_RS01020 - UDP-N-acetylmuramate dehydrogenase, at 232,181 to 233,218 _RS01020 HGI48_RS01025: HGI48_RS01025 - bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA, at 233,215 to 234,174 _RS01025 HGI48_RS01030: HGI48_RS01030 - type I pantothenate kinase, at 234,201 to 235,151 _RS01030 HGI48_RS01035: HGI48_RS01035 - tRNA-Thr, at 235,835 to 235,910 _RS01035 HGI48_RS01040: HGI48_RS01040 - tRNA-Tyr, at 235,927 to 236,011 _RS01040 HGI48_RS01045: HGI48_RS01045 - tRNA-Gly, at 236,147 to 236,221 _RS01045 Position (kb) 234 235 236Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 233.224 kb on + strandat 233.226 kb on + strandat 234.176 kb on - strandat 235.152 kb on - strandat 235.158 kb on - strandat 235.158 kb on - strandat 235.158 kb on - strandat 235.328 kb on + strandat 235.350 kb on - strandat 235.390 kb on - strandat 235.417 kb on + strandat 235.417 kb on + strandat 235.417 kb on + strandat 235.417 kb on + strandat 235.420 kb on + strandat 235.421 kb on - strandat 235.421 kb on - strandat 235.452 kb on + strandat 235.452 kb on + strandat 235.452 kb on + strandat 235.452 kb on + strandat 235.453 kb on - strandat 235.453 kb on - strandat 235.453 kb on - strandat 235.461 kb on + strandat 235.462 kb on - strandat 235.462 kb on - strandat 235.462 kb on - strandat 235.504 kb on - strandat 235.525 kb on + strandat 235.526 kb on - strandat 235.546 kb on - strandat 235.618 kb on + strandat 235.619 kb on - strandat 235.668 kb on + strandat 235.668 kb on + strandat 235.668 kb on + strandat 235.685 kb on + strandat 235.686 kb on - strandat 235.705 kb on - strandat 235.705 kb on - strandat 236.035 kb on + strandat 236.035 kb on + strandat 236.035 kb on + strandat 236.047 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
remove
233,224 + -0.4
233,226 + -1.6
234,176 - +0.2
235,152 - +1.4
235,158 - -1.0
235,158 - +0.5
235,158 - +1.4
235,328 + +1.2
235,350 - -0.1
235,390 - -1.1
235,417 + +0.8
235,417 + +0.0
235,417 + -0.3
235,417 + -0.4
235,420 + -0.4
235,421 - +1.6
235,421 - -0.8
235,452 + +0.3
235,452 + -3.1
235,452 + +0.6
235,452 + +1.5
235,453 - +0.5
235,453 - +1.8
235,453 - -0.8
235,461 + -1.1
235,462 - +1.7
235,462 - +1.8
235,462 - -1.1
235,504 - -1.3
235,525 + +0.9
235,526 - -0.1
235,546 - +0.6
235,618 + -2.4
235,619 - -1.6
235,668 + +0.2
235,668 + +1.0
235,668 + +0.4
235,685 + +0.5
235,686 - +2.2
235,705 - +1.5
235,705 - +0.9
236,035 + -0.8
236,035 + -0.6
236,035 + +1.8
236,047 + +1.2

Or see this region's nucleotide sequence