Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00590 and HGI48_RS00595 are separated by 129 nucleotides HGI48_RS00595 and HGI48_RS00600 are separated by 90 nucleotides HGI48_RS00600 and HGI48_RS00605 overlap by 8 nucleotides
HGI48_RS00590: HGI48_RS00590 - hypothetical protein, at 141,299 to 141,736
_RS00590
HGI48_RS00595: HGI48_RS00595 - hypothetical protein, at 141,866 to 142,630
_RS00595
HGI48_RS00600: HGI48_RS00600 - ABC transporter ATP-binding protein, at 142,721 to 143,434
_RS00600
HGI48_RS00605: HGI48_RS00605 - ABC transporter permease, at 143,427 to 144,647
_RS00605
Position (kb) 142
143
144 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 141.734 kb on + strand at 141.734 kb on + strand at 141.734 kb on + strand at 141.734 kb on + strand at 141.735 kb on - strand at 141.735 kb on - strand at 141.809 kb on + strand at 141.809 kb on + strand at 141.809 kb on + strand at 141.809 kb on + strand at 141.809 kb on + strand at 141.809 kb on + strand at 141.810 kb on - strand at 141.810 kb on - strand at 141.810 kb on - strand at 141.810 kb on - strand at 141.810 kb on - strand at 141.810 kb on - strand at 141.811 kb on + strand at 141.811 kb on + strand at 141.811 kb on + strand at 141.811 kb on + strand at 141.812 kb on - strand at 141.812 kb on - strand at 141.812 kb on - strand at 141.812 kb on - strand at 141.812 kb on - strand at 141.812 kb on - strand at 141.812 kb on - strand at 141.812 kb on - strand at 141.812 kb on - strand at 141.812 kb on - strand at 141.848 kb on + strand at 141.851 kb on + strand at 141.877 kb on + strand at 141.877 kb on + strand at 141.877 kb on + strand at 141.877 kb on + strand at 141.877 kb on + strand at 141.878 kb on - strand at 141.878 kb on - strand at 141.878 kb on - strand at 141.878 kb on - strand at 141.878 kb on - strand at 141.878 kb on - strand at 141.881 kb on - strand at 141.903 kb on - strand at 141.903 kb on - strand at 141.962 kb on - strand, within HGI48_RS00595 at 141.962 kb on - strand, within HGI48_RS00595 at 141.991 kb on + strand, within HGI48_RS00595 at 142.133 kb on + strand, within HGI48_RS00595 at 142.135 kb on + strand, within HGI48_RS00595 at 142.135 kb on + strand, within HGI48_RS00595 at 142.136 kb on - strand, within HGI48_RS00595 at 142.136 kb on - strand, within HGI48_RS00595 at 142.154 kb on + strand, within HGI48_RS00595 at 142.155 kb on - strand, within HGI48_RS00595 at 142.155 kb on - strand, within HGI48_RS00595 at 142.232 kb on - strand, within HGI48_RS00595 at 142.241 kb on - strand, within HGI48_RS00595 at 142.286 kb on + strand at 142.286 kb on + strand, within HGI48_RS00595 at 142.286 kb on + strand, within HGI48_RS00595 at 142.287 kb on - strand, within HGI48_RS00595 at 142.287 kb on - strand, within HGI48_RS00595 at 142.306 kb on + strand, within HGI48_RS00595 at 142.343 kb on + strand, within HGI48_RS00595 at 142.343 kb on + strand at 142.344 kb on - strand at 142.344 kb on - strand, within HGI48_RS00595 at 142.344 kb on - strand at 142.344 kb on - strand, within HGI48_RS00595 at 142.344 kb on - strand, within HGI48_RS00595 at 142.344 kb on - strand, within HGI48_RS00595 at 142.344 kb on - strand, within HGI48_RS00595 at 142.397 kb on + strand, within HGI48_RS00595 at 142.397 kb on + strand at 142.398 kb on - strand, within HGI48_RS00595 at 142.398 kb on - strand, within HGI48_RS00595 at 142.426 kb on + strand, within HGI48_RS00595 at 142.426 kb on + strand, within HGI48_RS00595 at 142.427 kb on - strand, within HGI48_RS00595 at 142.427 kb on - strand, within HGI48_RS00595 at 142.427 kb on - strand, within HGI48_RS00595 at 142.430 kb on + strand, within HGI48_RS00595 at 142.430 kb on + strand, within HGI48_RS00595 at 142.430 kb on + strand, within HGI48_RS00595 at 142.431 kb on - strand, within HGI48_RS00595 at 142.431 kb on - strand, within HGI48_RS00595 at 142.452 kb on - strand, within HGI48_RS00595 at 142.496 kb on + strand, within HGI48_RS00595 at 142.674 kb on + strand at 142.674 kb on + strand at 142.674 kb on + strand at 142.674 kb on + strand at 142.674 kb on + strand at 142.675 kb on - strand at 142.675 kb on - strand at 142.675 kb on - strand at 142.675 kb on - strand at 142.675 kb on - strand at 142.675 kb on - strand at 142.678 kb on + strand at 142.678 kb on + strand at 142.678 kb on + strand at 142.678 kb on + strand at 142.679 kb on - strand at 142.679 kb on - strand at 142.679 kb on - strand at 142.689 kb on + strand at 142.690 kb on - strand at 142.755 kb on + strand at 142.756 kb on - strand at 142.756 kb on - strand at 142.803 kb on + strand, within HGI48_RS00600 at 142.815 kb on + strand, within HGI48_RS00600 at 142.844 kb on - strand, within HGI48_RS00600 at 142.891 kb on + strand, within HGI48_RS00600 at 143.085 kb on - strand, within HGI48_RS00600 at 143.092 kb on + strand at 143.092 kb on + strand, within HGI48_RS00600 at 143.093 kb on - strand at 143.296 kb on + strand, within HGI48_RS00600 at 143.297 kb on - strand, within HGI48_RS00600 at 143.336 kb on - strand, within HGI48_RS00600 at 143.344 kb on - strand, within HGI48_RS00600 at 143.377 kb on + strand at 143.377 kb on + strand at 143.377 kb on + strand at 143.377 kb on + strand at 143.378 kb on - strand at 143.413 kb on - strand at 143.413 kb on - strand at 143.533 kb on + strand at 143.533 kb on + strand at 143.534 kb on - strand at 143.534 kb on - strand at 143.534 kb on - strand at 143.534 kb on - strand at 143.534 kb on - strand at 143.537 kb on + strand at 143.537 kb on + strand at 143.537 kb on + strand at 143.537 kb on + strand at 143.537 kb on + strand at 143.538 kb on - strand at 143.538 kb on - strand at 143.611 kb on + strand, within HGI48_RS00605 at 143.621 kb on + strand, within HGI48_RS00605 at 143.621 kb on + strand, within HGI48_RS00605 at 143.621 kb on + strand, within HGI48_RS00605 at 143.621 kb on + strand, within HGI48_RS00605 at 143.621 kb on + strand, within HGI48_RS00605 at 143.621 kb on + strand, within HGI48_RS00605 at 143.622 kb on - strand, within HGI48_RS00605 at 143.779 kb on + strand, within HGI48_RS00605 at 143.779 kb on + strand, within HGI48_RS00605 at 143.780 kb on - strand, within HGI48_RS00605 at 143.780 kb on - strand, within HGI48_RS00605 at 143.798 kb on + strand at 143.799 kb on - strand, within HGI48_RS00605 at 143.816 kb on + strand, within HGI48_RS00605 at 143.845 kb on + strand, within HGI48_RS00605 at 143.845 kb on + strand, within HGI48_RS00605 at 143.846 kb on - strand, within HGI48_RS00605 at 143.846 kb on - strand, within HGI48_RS00605 at 143.851 kb on + strand, within HGI48_RS00605 at 143.852 kb on - strand, within HGI48_RS00605 at 143.878 kb on - strand, within HGI48_RS00605 at 143.878 kb on - strand at 143.878 kb on - strand, within HGI48_RS00605 at 143.878 kb on - strand at 143.878 kb on - strand, within HGI48_RS00605 at 144.107 kb on + strand, within HGI48_RS00605 at 144.115 kb on + strand, within HGI48_RS00605 at 144.115 kb on + strand, within HGI48_RS00605 at 144.115 kb on + strand, within HGI48_RS00605 at 144.115 kb on + strand, within HGI48_RS00605 at 144.115 kb on + strand, within HGI48_RS00605 at 144.115 kb on + strand, within HGI48_RS00605 at 144.176 kb on - strand, within HGI48_RS00605 at 144.176 kb on - strand, within HGI48_RS00605 at 144.176 kb on - strand, within HGI48_RS00605 at 144.176 kb on - strand, within HGI48_RS00605 at 144.292 kb on + strand, within HGI48_RS00605 at 144.293 kb on - strand, within HGI48_RS00605 at 144.293 kb on - strand, within HGI48_RS00605 at 144.293 kb on - strand, within HGI48_RS00605 at 144.293 kb on - strand, within HGI48_RS00605 at 144.371 kb on - strand, within HGI48_RS00605 at 144.371 kb on - strand, within HGI48_RS00605 at 144.371 kb on - strand, within HGI48_RS00605
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 141,734 + +0.2 141,734 + +0.8 141,734 + -1.6 141,734 + -0.8 141,735 - +0.3 141,735 - -1.0 141,809 + +1.0 141,809 + +1.6 141,809 + -1.6 141,809 + +0.7 141,809 + +0.6 141,809 + -1.6 141,810 - +0.4 141,810 - +0.3 141,810 - -2.3 141,810 - +0.6 141,810 - -2.0 141,810 - +0.9 141,811 + +1.0 141,811 + +2.0 141,811 + -2.1 141,811 + +0.9 141,812 - +0.4 141,812 - -1.4 141,812 - -0.8 141,812 - -1.4 141,812 - +0.6 141,812 - -1.4 141,812 - -1.8 141,812 - -1.8 141,812 - -0.4 141,812 - -1.6 141,848 + +2.6 141,851 + -1.4 141,877 + +2.2 141,877 + +0.2 141,877 + -2.6 141,877 + -1.1 141,877 + -0.1 141,878 - -0.3 141,878 - +1.6 141,878 - +1.2 141,878 - -3.0 141,878 - +1.8 141,878 - -0.0 141,881 - -0.8 141,903 - -1.8 141,903 - +0.6 141,962 - HGI48_RS00595 0.13 +1.0 141,962 - HGI48_RS00595 0.13 +1.5 141,991 + HGI48_RS00595 0.16 +0.3 142,133 + HGI48_RS00595 0.35 -0.6 142,135 + HGI48_RS00595 0.35 -1.4 142,135 + HGI48_RS00595 0.35 +0.9 142,136 - HGI48_RS00595 0.35 -0.8 142,136 - HGI48_RS00595 0.35 +1.0 142,154 + HGI48_RS00595 0.38 +0.1 142,155 - HGI48_RS00595 0.38 -0.5 142,155 - HGI48_RS00595 0.38 -1.4 142,232 - HGI48_RS00595 0.48 -0.4 142,241 - HGI48_RS00595 0.49 -1.8 142,286 + -0.4 142,286 + HGI48_RS00595 0.55 +0.5 142,286 + HGI48_RS00595 0.55 +0.9 142,287 - HGI48_RS00595 0.55 -0.0 142,287 - HGI48_RS00595 0.55 +0.5 142,306 + HGI48_RS00595 0.58 -0.1 142,343 + HGI48_RS00595 0.62 +0.3 142,343 + -0.4 142,344 - -0.4 142,344 - HGI48_RS00595 0.62 -0.4 142,344 - +1.6 142,344 - HGI48_RS00595 0.62 -0.1 142,344 - HGI48_RS00595 0.62 -1.1 142,344 - HGI48_RS00595 0.62 -1.1 142,344 - HGI48_RS00595 0.62 -2.0 142,397 + HGI48_RS00595 0.69 -2.3 142,397 + +1.2 142,398 - HGI48_RS00595 0.70 -0.2 142,398 - HGI48_RS00595 0.70 +0.5 142,426 + HGI48_RS00595 0.73 +1.3 142,426 + HGI48_RS00595 0.73 +0.2 142,427 - HGI48_RS00595 0.73 +0.2 142,427 - HGI48_RS00595 0.73 -0.5 142,427 - HGI48_RS00595 0.73 +0.6 142,430 + HGI48_RS00595 0.74 -1.8 142,430 + HGI48_RS00595 0.74 -0.3 142,430 + HGI48_RS00595 0.74 +1.0 142,431 - HGI48_RS00595 0.74 -3.3 142,431 - HGI48_RS00595 0.74 -1.0 142,452 - HGI48_RS00595 0.77 -2.0 142,496 + HGI48_RS00595 0.82 +1.2 142,674 + +1.2 142,674 + +0.2 142,674 + -2.1 142,674 + -0.4 142,674 + -1.1 142,675 - -1.8 142,675 - +2.0 142,675 - +1.8 142,675 - -2.5 142,675 - +1.6 142,675 - +2.4 142,678 + -2.1 142,678 + -1.1 142,678 + +1.0 142,678 + +1.5 142,679 - -2.0 142,679 - +0.9 142,679 - +2.1 142,689 + +1.0 142,690 - -0.6 142,755 + +0.9 142,756 - +0.1 142,756 - -1.4 142,803 + HGI48_RS00600 0.11 -2.1 142,815 + HGI48_RS00600 0.13 +0.2 142,844 - HGI48_RS00600 0.17 +1.1 142,891 + HGI48_RS00600 0.24 -1.4 143,085 - HGI48_RS00600 0.51 -0.8 143,092 + -0.4 143,092 + HGI48_RS00600 0.52 -1.8 143,093 - -0.4 143,296 + HGI48_RS00600 0.81 +0.1 143,297 - HGI48_RS00600 0.81 -1.1 143,336 - HGI48_RS00600 0.86 +0.1 143,344 - HGI48_RS00600 0.87 +0.8 143,377 + -1.4 143,377 + -1.8 143,377 + -2.3 143,377 + -1.4 143,378 - -1.4 143,413 - +2.6 143,413 - -1.4 143,533 + -0.9 143,533 + -1.6 143,534 - +0.1 143,534 - -1.6 143,534 - +1.5 143,534 - -0.4 143,534 - -0.5 143,537 + +0.6 143,537 + +1.0 143,537 + +0.3 143,537 + -0.8 143,537 + -1.6 143,538 - +2.0 143,538 - +0.5 143,611 + HGI48_RS00605 0.15 -0.8 143,621 + HGI48_RS00605 0.16 -1.6 143,621 + HGI48_RS00605 0.16 +0.1 143,621 + HGI48_RS00605 0.16 -1.6 143,621 + HGI48_RS00605 0.16 -0.8 143,621 + HGI48_RS00605 0.16 -0.4 143,621 + HGI48_RS00605 0.16 -0.7 143,622 - HGI48_RS00605 0.16 +0.8 143,779 + HGI48_RS00605 0.29 -1.8 143,779 + HGI48_RS00605 0.29 -0.8 143,780 - HGI48_RS00605 0.29 -1.1 143,780 - HGI48_RS00605 0.29 +0.3 143,798 + +1.6 143,799 - HGI48_RS00605 0.30 -1.6 143,816 + HGI48_RS00605 0.32 -0.4 143,845 + HGI48_RS00605 0.34 +0.6 143,845 + HGI48_RS00605 0.34 +0.9 143,846 - HGI48_RS00605 0.34 -1.8 143,846 - HGI48_RS00605 0.34 -0.1 143,851 + HGI48_RS00605 0.35 +0.8 143,852 - HGI48_RS00605 0.35 -1.3 143,878 - HGI48_RS00605 0.37 +0.4 143,878 - +1.2 143,878 - HGI48_RS00605 0.37 +0.2 143,878 - -0.4 143,878 - HGI48_RS00605 0.37 +0.1 144,107 + HGI48_RS00605 0.56 -1.1 144,115 + HGI48_RS00605 0.56 +0.2 144,115 + HGI48_RS00605 0.56 +0.5 144,115 + HGI48_RS00605 0.56 -2.6 144,115 + HGI48_RS00605 0.56 -2.9 144,115 + HGI48_RS00605 0.56 +0.1 144,115 + HGI48_RS00605 0.56 +1.2 144,176 - HGI48_RS00605 0.61 +0.1 144,176 - HGI48_RS00605 0.61 -0.4 144,176 - HGI48_RS00605 0.61 -1.6 144,176 - HGI48_RS00605 0.61 +0.5 144,292 + HGI48_RS00605 0.71 -0.1 144,293 - HGI48_RS00605 0.71 -0.4 144,293 - HGI48_RS00605 0.71 -0.8 144,293 - HGI48_RS00605 0.71 +1.8 144,293 - HGI48_RS00605 0.71 +1.4 144,371 - HGI48_RS00605 0.77 -0.5 144,371 - HGI48_RS00605 0.77 -1.6 144,371 - HGI48_RS00605 0.77 +1.7
Or see this region's nucleotide sequence