Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00445

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
110,970	+				+1.3
110,970	+				-1.8
110,971	-				-1.4
110,971	-				+0.7
110,971	-				+1.5
110,971	-				+0.9
110,971	-				+1.0
110,974	+				+0.9
110,974	+				+0.4
110,974	+				-1.8
110,974	+				+4.5
110,975	-				-3.0
110,975	-				-0.4
110,975	-				-1.6
110,975	-				-1.6
111,001	-				+1.2
111,001	-				-1.6
111,076	+				+1.6
111,077	-		HGI48_RS00440	0.19	-0.8
111,077	-		HGI48_RS00440	0.19	+0.8
111,088	+		HGI48_RS00440	0.20	+1.0
111,088	+		HGI48_RS00440	0.20	+1.1
111,301	-				+3.5
111,301	-		HGI48_RS00440	0.53	-0.1
111,304	-		HGI48_RS00440	0.54	-2.1
111,318	+		HGI48_RS00440	0.56	-0.2
111,319	-				-0.4
111,319	-		HGI48_RS00440	0.56	+2.2
111,511	-		HGI48_RS00440	0.86	-1.4
111,654	+				+1.2
111,654	+				-1.4
111,655	-				-0.2
111,743	+				+0.1
111,743	+				-2.9
111,743	+				+0.2
111,744	-				-0.9
111,744	-				+0.3
111,744	-				+0.0
111,744	-				+0.9
111,744	-				+2.4
111,795	+				-1.1
111,795	+				+1.2
111,796	-				-1.4
111,796	-				-1.9
111,796	-				-1.4
111,796	-				-1.0
111,796	-				+1.0
111,796	-				+0.4
111,796	-				+0.4
111,796	-				+0.6
111,796	-				-1.5
111,798	+				-0.1
111,798	+				+1.8
111,798	+				-0.1
111,798	+				+0.9
111,799	-				-1.5
111,799	-				+0.6
111,799	-				+0.1
111,799	-				+0.8
111,799	-				-1.1
111,799	-				-1.4
111,804	+				+1.7
111,805	-				+0.3
111,809	+				+0.4
111,809	+				+2.4
111,809	+				-0.8
111,809	+				-2.9
111,809	+				+0.5
111,809	+				+1.8
111,810	-				-2.4
111,810	-				+0.1
111,810	-				+1.0
111,810	-				+0.2
111,810	-				+0.3
111,810	-				-1.5
111,810	-				+1.2
111,810	-				-1.8
111,848	+				-2.1
111,849	-				-1.6
111,862	+				-0.7
111,862	+				-2.0
111,862	+				+0.7
111,863	-				+2.2
112,021	+		HGI48_RS00445	0.14	+0.5
112,021	+		HGI48_RS00445	0.14	-1.4
112,022	-		HGI48_RS00445	0.15	+0.7
112,104	+		HGI48_RS00445	0.23	-4.0
112,126	-		HGI48_RS00445	0.26	+0.9
112,160	+		HGI48_RS00445	0.29	-1.8
112,160	+		HGI48_RS00445	0.29	-0.3
112,160	+		HGI48_RS00445	0.29	+0.7
112,161	-		HGI48_RS00445	0.29	-1.6
112,167	+		HGI48_RS00445	0.30	+0.5
112,168	-				-0.4
112,201	+		HGI48_RS00445	0.34	-0.8
112,201	+		HGI48_RS00445	0.34	-2.7
112,201	+		HGI48_RS00445	0.34	-2.3
112,202	-		HGI48_RS00445	0.34	+1.5
112,202	-		HGI48_RS00445	0.34	+1.2
112,202	-		HGI48_RS00445	0.34	+0.9
112,202	-		HGI48_RS00445	0.34	-1.6
112,202	-		HGI48_RS00445	0.34	+0.1
112,266	-		HGI48_RS00445	0.41	-1.8
112,267	+		HGI48_RS00445	0.41	-1.1
112,267	+		HGI48_RS00445	0.41	-1.0
112,267	+		HGI48_RS00445	0.41	+0.1
112,267	+		HGI48_RS00445	0.41	+2.2
112,268	-		HGI48_RS00445	0.41	+2.4
112,268	-		HGI48_RS00445	0.41	-0.2
112,278	+		HGI48_RS00445	0.42	-0.2
112,278	+		HGI48_RS00445	0.42	+0.5
112,278	+		HGI48_RS00445	0.42	+1.2
112,340	+		HGI48_RS00445	0.48	-0.2
112,340	+		HGI48_RS00445	0.48	-1.1
112,354	+		HGI48_RS00445	0.50	-0.1
112,355	-		HGI48_RS00445	0.50	-0.7
112,589	-		HGI48_RS00445	0.75	-0.2
112,589	-		HGI48_RS00445	0.75	-0.6
112,589	-				-0.4
112,589	-		HGI48_RS00445	0.75	-1.1
112,589	-		HGI48_RS00445	0.75	+0.8
112,592	+		HGI48_RS00445	0.75	-0.5
112,592	+		HGI48_RS00445	0.75	-1.1
112,593	-		HGI48_RS00445	0.75	+0.8
112,593	-		HGI48_RS00445	0.75	-0.1
112,593	-		HGI48_RS00445	0.75	-1.3
112,593	-		HGI48_RS00445	0.75	+1.9
112,593	-		HGI48_RS00445	0.75	+0.3
112,593	-		HGI48_RS00445	0.75	+0.5
112,593	-		HGI48_RS00445	0.75	-1.4
112,593	-		HGI48_RS00445	0.75	+2.0
112,635	+		HGI48_RS00445	0.80	+1.7
112,635	+		HGI48_RS00445	0.80	-1.1
112,636	-		HGI48_RS00445	0.80	-2.0
112,636	-				+1.6
112,636	-		HGI48_RS00445	0.80	-0.8
112,763	+				-1.8
112,763	+				+0.9
112,764	-				+2.5
112,764	-				-0.4
112,764	-				-1.6
112,767	-				+2.5
112,827	+				-1.4
112,828	-				+1.6
112,828	-				-2.6
112,828	-				-0.8
112,828	-				-1.4
112,828	-				-0.3
112,863	-				+0.6
112,881	-				-0.2
112,940	+				-2.0
112,940	+				-3.3
112,958	+				+1.2
113,104	+		HGI48_RS00450	0.28	+0.5
113,104	+		HGI48_RS00450	0.28	-1.8
113,104	+		HGI48_RS00450	0.28	+0.3
113,105	-		HGI48_RS00450	0.28	-0.8
113,105	-		HGI48_RS00450	0.28	+0.2
113,105	-				+0.2
113,105	-		HGI48_RS00450	0.28	-1.1
113,105	-		HGI48_RS00450	0.28	+1.3
113,411	+		HGI48_RS00450	0.67	-0.8
113,411	+		HGI48_RS00450	0.67	-1.1
113,411	+		HGI48_RS00450	0.67	+0.4
113,412	-		HGI48_RS00450	0.67	+2.0
113,412	-		HGI48_RS00450	0.67	+0.4
113,412	-		HGI48_RS00450	0.67	-2.1
113,412	-		HGI48_RS00450	0.67	-1.4
113,412	-		HGI48_RS00450	0.67	-0.8
113,412	-		HGI48_RS00450	0.67	+1.0
113,412	-		HGI48_RS00450	0.67	+0.7
113,412	-		HGI48_RS00450	0.67	+0.9
113,412	-				+0.2
113,502	-		HGI48_RS00450	0.78	-2.1
113,627	+				-1.8
113,627	+				-2.1
113,627	+				-2.0
113,628	-				-0.8
113,628	-				+1.0
113,639	+				-0.4
113,639	+				-2.1
113,639	+				+0.1
113,642	+				+1.2
113,642	+				-2.5
113,642	+				+1.6
113,643	-				+1.7
113,643	-				-0.6
113,708	-				-2.5
113,726	+				+1.6
113,726	+				+0.2
113,726	+				-1.8
113,726	+				+0.7
113,726	+				+1.2
113,727	-				-0.5
113,727	-				+0.3
113,757	+				-1.4
113,758	-				-3.3
113,805	+				+0.6
113,805	+				-0.1