Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS20295

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,537,395	+		HGI48_RS20290	0.37	+0.5
4,537,395	+				-0.3
4,537,395	+		HGI48_RS20290	0.37	-0.1
4,537,396	-		HGI48_RS20290	0.37	-1.3
4,537,396	-		HGI48_RS20290	0.37	-0.4
4,537,396	-		HGI48_RS20290	0.37	-1.1
4,537,396	-		HGI48_RS20290	0.37	-0.7
4,537,396	-		HGI48_RS20290	0.37	-0.9
4,537,396	-		HGI48_RS20290	0.37	+0.8
4,537,421	-		HGI48_RS20290	0.38	+0.3
4,537,435	+		HGI48_RS20290	0.39	-0.7
4,537,436	-		HGI48_RS20290	0.39	-1.3
4,537,436	-		HGI48_RS20290	0.39	-2.3
4,537,459	+		HGI48_RS20290	0.41	-0.3
4,537,460	-		HGI48_RS20290	0.41	-1.3
4,537,477	-		HGI48_RS20290	0.42	+0.8
4,537,564	+		HGI48_RS20290	0.48	-0.0
4,537,564	+		HGI48_RS20290	0.48	+0.9
4,537,564	+		HGI48_RS20290	0.48	+0.9
4,537,583	-				+2.3
4,537,583	-		HGI48_RS20290	0.49	-0.3
4,537,599	+		HGI48_RS20290	0.50	+0.4
4,537,599	+		HGI48_RS20290	0.50	+0.7
4,537,600	-		HGI48_RS20290	0.50	-0.6
4,537,771	+		HGI48_RS20290	0.61	-0.3
4,537,824	-		HGI48_RS20290	0.65	-0.7
4,537,921	+		HGI48_RS20290	0.71	-0.1
4,537,921	+				+1.3
4,537,921	+		HGI48_RS20290	0.71	+1.4
4,537,921	+		HGI48_RS20290	0.71	-0.3
4,537,922	-		HGI48_RS20290	0.71	+0.7
4,537,922	-		HGI48_RS20290	0.71	+0.3
4,537,922	-		HGI48_RS20290	0.71	-1.7
4,537,922	-		HGI48_RS20290	0.71	-0.3
4,537,922	-		HGI48_RS20290	0.71	-0.6
4,537,922	-		HGI48_RS20290	0.71	-0.7
4,537,922	-				-0.3
4,538,194	+		HGI48_RS20290	0.88	+1.2
4,538,194	+		HGI48_RS20290	0.88	-1.2
4,538,194	+		HGI48_RS20290	0.88	-1.3
4,538,194	+		HGI48_RS20290	0.88	+1.4
4,538,194	+		HGI48_RS20290	0.88	-1.3
4,538,195	-		HGI48_RS20290	0.89	-0.6
4,538,195	-		HGI48_RS20290	0.89	-0.4
4,538,195	-		HGI48_RS20290	0.89	+1.6
4,538,195	-		HGI48_RS20290	0.89	-0.1
4,538,195	-		HGI48_RS20290	0.89	+0.7
4,538,195	-		HGI48_RS20290	0.89	-0.1
4,538,195	-		HGI48_RS20290	0.89	+0.8
4,538,195	-		HGI48_RS20290	0.89	+0.3
4,538,257	+				-0.6
4,538,257	+				-1.8
4,538,257	+				+0.3
4,538,289	-				+0.1
4,538,295	+				+0.7
4,538,295	+				-0.3
4,538,295	+				+0.0
4,538,295	+				-1.2
4,538,295	+				-1.3
4,538,295	+				+1.3
4,538,295	+				+1.8
4,538,296	-				-1.6
4,538,296	-				+0.5
4,538,325	+				-0.9
4,538,326	-				-0.3
4,538,378	+				-0.1
4,538,441	+				+0.2
4,538,712	+		HGI48_RS20295	0.18	-0.9
4,538,790	-		HGI48_RS20295	0.22	+0.3
4,538,864	+		HGI48_RS20295	0.26	-1.1
4,538,864	+		HGI48_RS20295	0.26	+0.8
4,538,864	+				-0.3
4,538,864	+		HGI48_RS20295	0.26	+0.1
4,538,865	-		HGI48_RS20295	0.26	+0.4
4,538,865	-		HGI48_RS20295	0.26	+0.9
4,538,865	-		HGI48_RS20295	0.26	-1.2
4,538,865	-		HGI48_RS20295	0.26	-2.0
4,538,925	+		HGI48_RS20295	0.30	-1.1
4,538,925	+		HGI48_RS20295	0.30	-1.1
4,538,926	-		HGI48_RS20295	0.30	-1.7
4,538,951	+		HGI48_RS20295	0.31	-1.1
4,538,951	+		HGI48_RS20295	0.31	+2.6
4,538,951	+		HGI48_RS20295	0.31	-1.3
4,538,951	+		HGI48_RS20295	0.31	+0.8
4,538,951	+		HGI48_RS20295	0.31	-2.8
4,538,952	-		HGI48_RS20295	0.31	-1.6
4,538,952	-		HGI48_RS20295	0.31	-1.7
4,538,981	+		HGI48_RS20295	0.33	+0.5
4,539,137	+		HGI48_RS20295	0.41	-2.0
4,539,137	+		HGI48_RS20295	0.41	-1.2
4,539,225	+		HGI48_RS20295	0.46	-2.6
4,539,226	-		HGI48_RS20295	0.46	-1.3
4,539,266	+		HGI48_RS20295	0.48	-0.8
4,539,266	+		HGI48_RS20295	0.48	+3.4
4,539,267	-		HGI48_RS20295	0.48	+0.0
4,539,267	-		HGI48_RS20295	0.48	-1.1
4,539,267	-		HGI48_RS20295	0.48	-0.3
4,539,336	+				+0.7
4,539,337	-		HGI48_RS20295	0.52	-0.6
4,539,382	+		HGI48_RS20295	0.54	-1.7
4,539,405	+				-0.3
4,539,488	+		HGI48_RS20295	0.60	-0.7
4,539,489	-				-0.3
4,539,489	-		HGI48_RS20295	0.60	-1.2
4,539,491	+		HGI48_RS20295	0.60	-1.6
4,539,492	-		HGI48_RS20295	0.60	-0.6
4,539,911	+		HGI48_RS20295	0.83	-1.9
4,539,911	+		HGI48_RS20295	0.83	+0.8
4,539,911	+		HGI48_RS20295	0.83	+0.1
4,539,911	+				+0.7
4,539,912	-		HGI48_RS20295	0.83	-1.7
4,539,912	-		HGI48_RS20295	0.83	-1.9
4,539,912	-				-0.3
4,539,912	-				-0.3
4,539,912	-		HGI48_RS20295	0.83	-2.4
4,539,912	-		HGI48_RS20295	0.83	+0.8
4,539,953	+		HGI48_RS20295	0.85	-1.4
4,539,954	-				+0.7
4,539,960	+		HGI48_RS20295	0.86	-1.1
4,540,122	+				+1.7
4,540,123	-				-0.2
4,540,123	-				+2.2
4,540,185	+				-1.2
4,540,185	+				+0.0
4,540,186	-				-1.1
4,540,189	-				-1.3
4,540,189	-				-1.1
4,540,189	-				-0.5
4,540,189	-				+1.0
4,540,189	-				+0.4
4,540,218	-				-0.2
4,540,218	-				-0.3
4,540,221	+				-0.7
4,540,221	+				-2.1
4,540,221	+				+0.7
4,540,221	+				-2.4
4,540,221	+				-0.9
4,540,221	+				-0.7
4,540,221	+				+0.8
4,540,221	+				+1.9
4,540,221	+				+0.4
4,540,221	+				+1.1
4,540,221	+				-0.6
4,540,222	-				-1.2
4,540,222	-				-0.6
4,540,222	-				+0.3
4,540,222	-				+0.5
4,540,227	+				-2.6
4,540,227	+				-0.1
4,540,227	+				+0.3
4,540,237	-				+2.0
4,540,296	+				+0.0
4,540,369	+				-2.7
4,540,369	+				+1.4
4,540,370	-				-0.9
4,540,482	-		HGI48_RS20300	0.21	+2.9
4,540,482	-		HGI48_RS20300	0.21	-0.7
4,540,482	-				+0.7
4,540,482	-		HGI48_RS20300	0.21	-0.7
4,540,501	+		HGI48_RS20300	0.23	-0.6
4,540,501	+		HGI48_RS20300	0.23	+0.3
4,540,502	-		HGI48_RS20300	0.23	-0.9
4,540,616	-		HGI48_RS20300	0.35	+0.6
4,540,652	+		HGI48_RS20300	0.39	+0.3
4,540,652	+		HGI48_RS20300	0.39	+0.7
4,540,653	-		HGI48_RS20300	0.39	-0.7
4,540,653	-		HGI48_RS20300	0.39	-1.3
4,540,653	-		HGI48_RS20300	0.39	+1.5
4,540,653	-		HGI48_RS20300	0.39	+0.7
4,540,730	+		HGI48_RS20300	0.47	+1.7
4,540,730	+		HGI48_RS20300	0.47	-1.3
4,540,730	+		HGI48_RS20300	0.47	-1.7
4,540,731	-		HGI48_RS20300	0.47	-1.1
4,540,731	-		HGI48_RS20300	0.47	+0.0
4,540,731	-				+0.3
4,540,731	-		HGI48_RS20300	0.47	-0.7
4,540,731	-		HGI48_RS20300	0.47	+0.3
4,540,731	-		HGI48_RS20300	0.47	+0.9
4,540,731	-		HGI48_RS20300	0.47	-0.7
4,540,731	-		HGI48_RS20300	0.47	-1.4
4,540,764	+		HGI48_RS20300	0.51	+1.6
4,540,906	+		HGI48_RS20300	0.66	-1.9
4,540,906	+		HGI48_RS20300	0.66	-1.3
4,540,906	+				-0.3
4,540,906	+		HGI48_RS20300	0.66	-0.1
4,540,906	+		HGI48_RS20300	0.66	-0.3
4,540,906	+		HGI48_RS20300	0.66	+0.1
4,540,906	+		HGI48_RS20300	0.66	-0.7
4,540,907	-		HGI48_RS20300	0.66	-0.8
4,540,907	-		HGI48_RS20300	0.66	-0.2
4,540,907	-		HGI48_RS20300	0.66	-1.2
4,540,907	-		HGI48_RS20300	0.66	+0.3
4,540,921	+		HGI48_RS20300	0.68	-0.6
4,540,922	-		HGI48_RS20300	0.68	-0.7
4,540,922	-		HGI48_RS20300	0.68	-0.0
4,540,937	+		HGI48_RS20300	0.69	+0.3
4,540,937	+		HGI48_RS20300	0.69	-0.3
4,540,937	+		HGI48_RS20300	0.69	+0.8
4,540,937	+		HGI48_RS20300	0.69	+0.2
4,540,937	+		HGI48_RS20300	0.69	+0.3
4,540,937	+		HGI48_RS20300	0.69	-0.6
4,540,937	+		HGI48_RS20300	0.69	+0.8
4,540,937	+		HGI48_RS20300	0.69	-0.3
4,540,937	+		HGI48_RS20300	0.69	-0.6
4,540,938	-		HGI48_RS20300	0.70	-0.0
4,540,938	-		HGI48_RS20300	0.70	-0.3
4,540,938	-		HGI48_RS20300	0.70	-1.1
4,541,003	+		HGI48_RS20300	0.77	+0.5
4,541,003	+		HGI48_RS20300	0.77	-0.0
4,541,003	+		HGI48_RS20300	0.77	+0.6
4,541,004	-		HGI48_RS20300	0.77	-0.2
4,541,004	-		HGI48_RS20300	0.77	+1.3
4,541,016	+		HGI48_RS20300	0.78	-1.2
4,541,016	+		HGI48_RS20300	0.78	-0.3
4,541,017	-		HGI48_RS20300	0.78	-0.3
4,541,017	-		HGI48_RS20300	0.78	-0.6
4,541,017	-		HGI48_RS20300	0.78	+0.3
4,541,096	+		HGI48_RS20300	0.87	-1.3
4,541,096	+		HGI48_RS20300	0.87	+1.5
4,541,096	+		HGI48_RS20300	0.87	+2.9
4,541,097	-		HGI48_RS20300	0.87	-0.7
4,541,199	+				-0.1
4,541,199	+				-0.3
4,541,199	+				+0.0
4,541,199	+				-1.6
4,541,200	-				+1.3
4,541,200	-				-1.9
4,541,201	+				+1.3
4,541,201	+				+1.3
4,541,201	+				-0.2
4,541,201	+				-0.2
4,541,201	+				-2.3
4,541,201	+				-0.3
4,541,201	+				-1.1
4,541,201	+				-0.7
4,541,202	-				-2.1
4,541,202	-				-0.3
4,541,202	-				+0.3
4,541,202	-				+0.4
4,541,202	-				+1.3
4,541,202	-				+0.6
4,541,202	-				+1.1
4,541,202	-				-0.7
4,541,202	-				-0.5
4,541,202	-				-1.6
4,541,202	-				-1.1
4,541,202	-				+2.8