Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS19675 and HGI48_RS19680 are separated by 52 nucleotides HGI48_RS19680 and HGI48_RS19685 are separated by 482 nucleotides
HGI48_RS19675: HGI48_RS19675 - 3-dehydroquinate synthase, at 4,392,789 to 4,393,874
_RS19675
HGI48_RS19680: HGI48_RS19680 - shikimate kinase AroK, at 4,393,927 to 4,394,448
_RS19680
HGI48_RS19685: HGI48_RS19685 - DNA uptake porin HofQ, at 4,394,931 to 4,396,235
_RS19685
Position (kb) 4393
4394
4395 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4394.482 kb on - strand at 4394.499 kb on - strand at 4394.499 kb on - strand at 4394.516 kb on - strand at 4394.516 kb on - strand at 4394.516 kb on - strand at 4394.538 kb on - strand at 4394.645 kb on + strand at 4394.646 kb on - strand at 4394.646 kb on - strand at 4394.646 kb on - strand at 4394.646 kb on - strand at 4394.666 kb on + strand at 4394.667 kb on - strand at 4394.667 kb on - strand at 4394.708 kb on + strand at 4394.708 kb on + strand at 4394.717 kb on + strand at 4394.718 kb on - strand at 4394.719 kb on + strand at 4394.720 kb on - strand at 4394.732 kb on + strand at 4394.732 kb on + strand at 4394.732 kb on + strand at 4394.733 kb on - strand at 4394.733 kb on - strand at 4394.733 kb on - strand at 4394.766 kb on + strand at 4394.766 kb on + strand at 4394.766 kb on + strand at 4394.766 kb on + strand at 4394.766 kb on + strand at 4394.767 kb on - strand at 4394.767 kb on - strand at 4394.767 kb on - strand at 4394.767 kb on - strand at 4394.771 kb on + strand at 4394.805 kb on + strand at 4394.805 kb on + strand at 4394.805 kb on + strand at 4394.806 kb on - strand at 4394.806 kb on - strand at 4394.809 kb on + strand at 4394.809 kb on + strand at 4394.809 kb on + strand at 4394.809 kb on + strand at 4394.809 kb on + strand at 4394.809 kb on + strand at 4394.810 kb on - strand at 4394.810 kb on - strand at 4394.810 kb on - strand at 4394.810 kb on - strand at 4394.810 kb on - strand at 4394.810 kb on - strand at 4394.840 kb on + strand at 4394.850 kb on + strand at 4394.851 kb on - strand at 4394.888 kb on - strand at 4394.978 kb on + strand at 4394.979 kb on - strand at 4395.037 kb on - strand at 4395.162 kb on - strand, within HGI48_RS19685 at 4395.175 kb on - strand, within HGI48_RS19685 at 4395.215 kb on + strand, within HGI48_RS19685 at 4395.215 kb on + strand, within HGI48_RS19685 at 4395.215 kb on + strand, within HGI48_RS19685 at 4395.216 kb on - strand, within HGI48_RS19685 at 4395.216 kb on - strand, within HGI48_RS19685 at 4395.242 kb on + strand, within HGI48_RS19685 at 4395.336 kb on + strand, within HGI48_RS19685 at 4395.392 kb on + strand, within HGI48_RS19685
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 4,394,482 - -0.3 4,394,499 - -0.1 4,394,499 - -0.8 4,394,516 - +2.1 4,394,516 - +1.4 4,394,516 - -0.6 4,394,538 - -0.4 4,394,645 + +1.5 4,394,646 - +0.4 4,394,646 - +0.0 4,394,646 - +0.9 4,394,646 - +2.7 4,394,666 + -1.9 4,394,667 - -0.8 4,394,667 - -0.8 4,394,708 + +0.0 4,394,708 + -0.3 4,394,717 + -0.8 4,394,718 - -0.1 4,394,719 + -0.7 4,394,720 - -1.1 4,394,732 + -0.6 4,394,732 + +0.2 4,394,732 + -2.3 4,394,733 - -1.0 4,394,733 - -1.2 4,394,733 - +0.7 4,394,766 + +1.8 4,394,766 + +0.2 4,394,766 + +0.8 4,394,766 + +0.2 4,394,766 + +1.2 4,394,767 - -0.0 4,394,767 - -0.0 4,394,767 - -1.1 4,394,767 - -0.8 4,394,771 + -1.1 4,394,805 + +0.2 4,394,805 + +0.8 4,394,805 + +1.2 4,394,806 - -1.1 4,394,806 - +0.2 4,394,809 + +1.4 4,394,809 + +0.2 4,394,809 + -1.3 4,394,809 + +1.0 4,394,809 + +0.5 4,394,809 + +0.2 4,394,810 - +1.5 4,394,810 - +0.7 4,394,810 - +0.1 4,394,810 - -0.2 4,394,810 - -1.1 4,394,810 - +0.9 4,394,840 + -0.4 4,394,850 + -0.3 4,394,851 - +0.7 4,394,888 - +0.8 4,394,978 + -0.2 4,394,979 - -0.6 4,395,037 - -0.3 4,395,162 - HGI48_RS19685 0.18 -0.8 4,395,175 - HGI48_RS19685 0.19 -1.3 4,395,215 + HGI48_RS19685 0.22 +1.2 4,395,215 + HGI48_RS19685 0.22 -0.3 4,395,215 + HGI48_RS19685 0.22 +1.8 4,395,216 - HGI48_RS19685 0.22 -0.6 4,395,216 - HGI48_RS19685 0.22 -0.6 4,395,242 + HGI48_RS19685 0.24 +1.5 4,395,336 + HGI48_RS19685 0.31 +1.1 4,395,392 + HGI48_RS19685 0.35 +0.7
Or see this region's nucleotide sequence