Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS19110

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,288,150	+		HGI48_RS19105	0.45	+0.2
4,288,151	-		HGI48_RS19105	0.46	-2.4
4,288,151	-		HGI48_RS19105	0.46	-0.4
4,288,222	+				-0.4
4,288,222	+		HGI48_RS19105	0.51	-0.4
4,288,223	-		HGI48_RS19105	0.51	+1.8
4,288,272	+		HGI48_RS19105	0.54	+2.9
4,288,272	+		HGI48_RS19105	0.54	+0.2
4,288,272	+		HGI48_RS19105	0.54	-1.9
4,288,273	-		HGI48_RS19105	0.55	-1.1
4,288,273	-		HGI48_RS19105	0.55	+0.7
4,288,273	-		HGI48_RS19105	0.55	+0.5
4,288,273	-		HGI48_RS19105	0.55	+1.2
4,288,859	+				-0.8
4,288,859	+				+0.6
4,288,860	-				+0.0
4,288,983	+				+1.0
4,288,983	+				+0.5
4,288,983	+				+0.7
4,288,984	-				+0.3
4,288,984	-				-0.5
4,288,984	-				+0.2
4,288,984	-				-0.6
4,289,046	+				+0.5
4,289,046	+				+0.1
4,289,046	+				-2.1
4,289,047	-				+1.2
4,289,047	-				-0.6
4,289,047	-				+3.0
4,289,047	-				-0.4
4,289,047	-				-1.1
4,289,047	-				+0.1
4,289,129	+				+1.2
4,289,130	-				+0.9
4,289,287	-		HGI48_RS19110	0.19	+1.7
4,289,287	-		HGI48_RS19110	0.19	-1.0
4,289,287	-		HGI48_RS19110	0.19	+0.2
4,289,367	-		HGI48_RS19110	0.23	+1.6
4,289,367	-		HGI48_RS19110	0.23	+1.6
4,289,478	+		HGI48_RS19110	0.30	+0.7
4,289,479	-		HGI48_RS19110	0.30	+0.6
4,289,496	+		HGI48_RS19110	0.31	-0.6
4,289,496	+		HGI48_RS19110	0.31	-0.8
4,289,496	+		HGI48_RS19110	0.31	+1.8
4,289,496	+		HGI48_RS19110	0.31	+0.4
4,289,496	+		HGI48_RS19110	0.31	+1.4
4,289,496	+		HGI48_RS19110	0.31	-1.9
4,289,497	-		HGI48_RS19110	0.31	-0.4
4,289,497	-		HGI48_RS19110	0.31	-1.1
4,289,497	-		HGI48_RS19110	0.31	+0.5
4,289,651	-		HGI48_RS19110	0.41	-1.8
4,289,784	+		HGI48_RS19110	0.49	+0.2
4,289,784	+		HGI48_RS19110	0.49	-0.4
4,289,784	+		HGI48_RS19110	0.49	+0.1
4,289,785	-		HGI48_RS19110	0.49	+1.2
4,289,785	-		HGI48_RS19110	0.49	-0.4
4,289,785	-		HGI48_RS19110	0.49	+1.7
4,289,785	-		HGI48_RS19110	0.49	+0.2
4,289,799	+				-0.4
4,289,799	+		HGI48_RS19110	0.50	-1.8
4,289,799	+		HGI48_RS19110	0.50	-1.4
4,289,799	+		HGI48_RS19110	0.50	-0.4
4,289,799	+				-0.4
4,289,799	+		HGI48_RS19110	0.50	-0.1
4,289,800	-		HGI48_RS19110	0.50	-2.4
4,289,800	-		HGI48_RS19110	0.50	+0.4
4,289,853	+		HGI48_RS19110	0.53	+0.6
4,289,853	+		HGI48_RS19110	0.53	-1.0
4,289,853	+		HGI48_RS19110	0.53	-0.2
4,289,854	-		HGI48_RS19110	0.53	+0.7
4,289,879	-				+1.2
4,289,879	-		HGI48_RS19110	0.54	-1.6
4,290,005	+		HGI48_RS19110	0.62	+0.9
4,290,005	+		HGI48_RS19110	0.62	+0.5
4,290,005	+		HGI48_RS19110	0.62	-1.5
4,290,005	+		HGI48_RS19110	0.62	-1.9
4,290,005	+		HGI48_RS19110	0.62	-0.1
4,290,005	+		HGI48_RS19110	0.62	-0.2
4,290,005	+		HGI48_RS19110	0.62	-1.0
4,290,005	+				-0.4
4,290,005	+		HGI48_RS19110	0.62	-2.1
4,290,005	+		HGI48_RS19110	0.62	+1.2
4,290,006	-		HGI48_RS19110	0.62	-0.0
4,290,072	+		HGI48_RS19110	0.66	-1.1
4,290,072	+		HGI48_RS19110	0.66	+0.1
4,290,072	+				+0.2
4,290,073	-		HGI48_RS19110	0.66	+0.0
4,290,073	-		HGI48_RS19110	0.66	+0.3
4,290,230	+		HGI48_RS19110	0.76	+0.0
4,290,231	-		HGI48_RS19110	0.76	-0.1
4,290,373	+				-0.4
4,290,373	+		HGI48_RS19110	0.84	+0.3
4,290,374	-		HGI48_RS19110	0.85	+1.3
4,290,553	+				-0.4
4,290,571	+				+0.2
4,290,571	+				-0.4
4,290,572	-				-1.8
4,290,572	-				+0.2
4,290,572	-				+1.5
4,290,572	-				+0.6
4,290,606	-				+0.6
4,290,608	+				+0.1
4,290,608	+				+1.2
4,290,609	-				-0.2
4,290,609	-				+0.9
4,290,609	-				+1.7
4,290,609	-				-0.8
4,290,649	-				+1.6
4,290,649	-				-0.3
4,290,649	-				-0.2
4,290,703	+				+2.0
4,290,704	-				+0.1
4,290,733	+				-0.2
4,290,733	+				-1.1
4,290,733	+				-1.1
4,290,733	+				-0.5
4,290,733	+				-0.9
4,290,734	-				+0.6
4,290,734	-				-0.1
4,290,734	-				+0.5
4,290,744	+				-0.4
4,290,754	+				-1.1
4,290,754	+				+1.5
4,290,755	-				-0.8
4,290,755	-				-0.3
4,290,772	+				-0.4
4,290,772	+				+0.4
4,290,772	+				-1.4
4,290,773	-				+0.2
4,290,776	+				-1.9
4,290,805	-				-2.0
4,290,822	+				+0.8
4,290,822	+				+0.1
4,290,822	+				+0.2
4,290,822	+				+0.2
4,290,823	-				+2.0
4,290,823	-				+0.4
4,290,823	-				-0.4
4,290,923	-				-0.1
4,290,923	-				-0.5
4,291,006	+				+0.2
4,291,006	+				-1.6
4,291,006	+				-0.8
4,291,006	+				-2.2
4,291,006	+				+0.3
4,291,006	+				+0.4
4,291,006	+				-0.5
4,291,007	-				+0.5
4,291,007	-				+1.0
4,291,007	-				-0.4
4,291,007	-				-0.4
4,291,007	-				+0.2
4,291,007	-				+0.5
4,291,007	-				-1.8
4,291,071	-				-0.8
4,291,124	+				+0.2
4,291,125	-		HGI48_RS19115	0.14	-0.5
4,291,125	-		HGI48_RS19115	0.14	+0.0
4,291,202	+		HGI48_RS19115	0.19	-1.2
4,291,202	+		HGI48_RS19115	0.19	+0.6
4,291,202	+		HGI48_RS19115	0.19	+0.6
4,291,203	-		HGI48_RS19115	0.19	-0.8
4,291,226	-		HGI48_RS19115	0.21	+0.2
4,291,226	-		HGI48_RS19115	0.21	-0.8
4,291,254	-		HGI48_RS19115	0.22	-0.6
4,291,285	+		HGI48_RS19115	0.25	-0.0
4,291,285	+		HGI48_RS19115	0.25	-1.1
4,291,286	-		HGI48_RS19115	0.25	+0.6
4,291,318	+		HGI48_RS19115	0.27	+0.1
4,291,318	+		HGI48_RS19115	0.27	+0.0
4,291,329	+		HGI48_RS19115	0.28	-1.0
4,291,368	-		HGI48_RS19115	0.30	-0.6
4,291,399	+		HGI48_RS19115	0.32	-0.7
4,291,624	+		HGI48_RS19115	0.48	+0.2
4,291,624	+		HGI48_RS19115	0.48	-0.4
4,291,625	-		HGI48_RS19115	0.48	-2.0
4,291,625	-		HGI48_RS19115	0.48	-1.8