Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS19050 and HGI48_RS19055 are separated by 86 nucleotides HGI48_RS19055 and HGI48_RS19060 are separated by 470 nucleotides
HGI48_RS19050: HGI48_RS19050 - miniconductance mechanosensitive channel MscM, at 4,274,024 to 4,277,347
_RS19050
HGI48_RS19055: HGI48_RS19055 - elongation factor P--(R)-beta-lysine ligase, at 4,277,434 to 4,278,411
_RS19055
HGI48_RS19060: HGI48_RS19060 - fumarate reductase (quinol) flavoprotein subunit, at 4,278,882 to 4,280,678
_RS19060
Position (kb) 4277
4278
4279 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4276.621 kb on + strand, within HGI48_RS19050 at 4276.622 kb on - strand, within HGI48_RS19050 at 4276.670 kb on + strand, within HGI48_RS19050 at 4276.671 kb on - strand, within HGI48_RS19050 at 4276.779 kb on + strand, within HGI48_RS19050 at 4276.891 kb on + strand, within HGI48_RS19050 at 4276.891 kb on + strand, within HGI48_RS19050 at 4276.892 kb on - strand, within HGI48_RS19050 at 4276.892 kb on - strand, within HGI48_RS19050 at 4276.895 kb on - strand, within HGI48_RS19050 at 4277.165 kb on - strand at 4277.191 kb on + strand at 4277.191 kb on + strand at 4277.191 kb on + strand at 4277.192 kb on - strand at 4277.192 kb on - strand at 4277.235 kb on - strand at 4277.278 kb on - strand at 4277.292 kb on + strand at 4277.293 kb on - strand at 4277.345 kb on + strand at 4277.346 kb on - strand at 4277.381 kb on - strand at 4277.381 kb on - strand at 4277.413 kb on + strand at 4277.413 kb on + strand at 4277.413 kb on + strand at 4277.413 kb on + strand at 4277.413 kb on + strand at 4277.413 kb on + strand at 4277.413 kb on + strand at 4277.693 kb on + strand, within HGI48_RS19055 at 4277.696 kb on + strand at 4278.039 kb on - strand, within HGI48_RS19055 at 4278.048 kb on - strand, within HGI48_RS19055 at 4278.135 kb on - strand, within HGI48_RS19055 at 4278.447 kb on + strand at 4278.498 kb on - strand at 4278.513 kb on - strand at 4278.513 kb on - strand at 4278.518 kb on + strand at 4278.528 kb on + strand at 4278.529 kb on - strand at 4278.538 kb on - strand at 4278.538 kb on - strand at 4278.543 kb on - strand at 4278.543 kb on - strand at 4278.543 kb on - strand at 4278.543 kb on - strand at 4278.589 kb on + strand at 4278.639 kb on - strand at 4278.639 kb on - strand at 4278.652 kb on + strand at 4278.757 kb on + strand at 4278.783 kb on + strand at 4278.857 kb on + strand at 4278.862 kb on + strand at 4278.866 kb on + strand at 4278.867 kb on - strand at 4278.867 kb on - strand at 4278.904 kb on + strand at 4278.904 kb on + strand at 4278.904 kb on + strand at 4279.126 kb on + strand, within HGI48_RS19060 at 4279.126 kb on + strand, within HGI48_RS19060 at 4279.126 kb on + strand, within HGI48_RS19060 at 4279.126 kb on + strand, within HGI48_RS19060 at 4279.126 kb on + strand, within HGI48_RS19060 at 4279.126 kb on + strand at 4279.126 kb on + strand, within HGI48_RS19060 at 4279.126 kb on + strand at 4279.126 kb on + strand, within HGI48_RS19060 at 4279.126 kb on + strand, within HGI48_RS19060 at 4279.126 kb on + strand, within HGI48_RS19060 at 4279.126 kb on + strand, within HGI48_RS19060 at 4279.127 kb on - strand, within HGI48_RS19060 at 4279.127 kb on - strand, within HGI48_RS19060 at 4279.127 kb on - strand, within HGI48_RS19060 at 4279.127 kb on - strand, within HGI48_RS19060 at 4279.127 kb on - strand, within HGI48_RS19060 at 4279.127 kb on - strand, within HGI48_RS19060 at 4279.127 kb on - strand, within HGI48_RS19060 at 4279.127 kb on - strand, within HGI48_RS19060 at 4279.127 kb on - strand, within HGI48_RS19060 at 4279.127 kb on - strand, within HGI48_RS19060 at 4279.127 kb on - strand, within HGI48_RS19060 at 4279.127 kb on - strand, within HGI48_RS19060 at 4279.129 kb on + strand, within HGI48_RS19060 at 4279.129 kb on + strand, within HGI48_RS19060 at 4279.129 kb on + strand, within HGI48_RS19060 at 4279.130 kb on - strand, within HGI48_RS19060 at 4279.130 kb on - strand, within HGI48_RS19060 at 4279.130 kb on - strand, within HGI48_RS19060 at 4279.361 kb on + strand, within HGI48_RS19060 at 4279.362 kb on - strand, within HGI48_RS19060 at 4279.406 kb on + strand, within HGI48_RS19060 at 4279.406 kb on + strand, within HGI48_RS19060 at 4279.406 kb on + strand, within HGI48_RS19060 at 4279.406 kb on + strand, within HGI48_RS19060 at 4279.406 kb on + strand, within HGI48_RS19060 at 4279.407 kb on - strand, within HGI48_RS19060 at 4279.407 kb on - strand at 4279.407 kb on - strand, within HGI48_RS19060 at 4279.407 kb on - strand at 4279.407 kb on - strand, within HGI48_RS19060
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 4,276,621 + HGI48_RS19050 0.78 +0.0 4,276,622 - HGI48_RS19050 0.78 -0.3 4,276,670 + HGI48_RS19050 0.80 -1.4 4,276,671 - HGI48_RS19050 0.80 -0.1 4,276,779 + HGI48_RS19050 0.83 +1.1 4,276,891 + HGI48_RS19050 0.86 +0.2 4,276,891 + HGI48_RS19050 0.86 -0.9 4,276,892 - HGI48_RS19050 0.86 -0.2 4,276,892 - HGI48_RS19050 0.86 -0.1 4,276,895 - HGI48_RS19050 0.86 +0.7 4,277,165 - +0.2 4,277,191 + +0.4 4,277,191 + +0.5 4,277,191 + +1.6 4,277,192 - +0.2 4,277,192 - -0.4 4,277,235 - +0.2 4,277,278 - +1.3 4,277,292 + +1.2 4,277,293 - -0.4 4,277,345 + +1.5 4,277,346 - -0.8 4,277,381 - +1.5 4,277,381 - -1.8 4,277,413 + -2.5 4,277,413 + +1.1 4,277,413 + +0.4 4,277,413 + +1.2 4,277,413 + -0.8 4,277,413 + -0.1 4,277,413 + +0.1 4,277,693 + HGI48_RS19055 0.26 -0.6 4,277,696 + +2.8 4,278,039 - HGI48_RS19055 0.62 -1.9 4,278,048 - HGI48_RS19055 0.63 -1.1 4,278,135 - HGI48_RS19055 0.72 -1.4 4,278,447 + +0.2 4,278,498 - +0.5 4,278,513 - +2.0 4,278,513 - +0.4 4,278,518 + +1.2 4,278,528 + +0.2 4,278,529 - -0.1 4,278,538 - +1.6 4,278,538 - +1.0 4,278,543 - -0.5 4,278,543 - -0.4 4,278,543 - +0.6 4,278,543 - -2.4 4,278,589 + -0.2 4,278,639 - +1.5 4,278,639 - +0.2 4,278,652 + -0.3 4,278,757 + -0.8 4,278,783 + -0.4 4,278,857 + -0.7 4,278,862 + -0.1 4,278,866 + -1.8 4,278,867 - -0.2 4,278,867 - -2.2 4,278,904 + -0.9 4,278,904 + -1.9 4,278,904 + -0.6 4,279,126 + HGI48_RS19060 0.14 -0.2 4,279,126 + HGI48_RS19060 0.14 -1.0 4,279,126 + HGI48_RS19060 0.14 -1.9 4,279,126 + HGI48_RS19060 0.14 -0.5 4,279,126 + HGI48_RS19060 0.14 -0.2 4,279,126 + -0.4 4,279,126 + HGI48_RS19060 0.14 +0.8 4,279,126 + +0.6 4,279,126 + HGI48_RS19060 0.14 -0.4 4,279,126 + HGI48_RS19060 0.14 +0.4 4,279,126 + HGI48_RS19060 0.14 +0.2 4,279,126 + HGI48_RS19060 0.14 -1.7 4,279,127 - HGI48_RS19060 0.14 +2.0 4,279,127 - HGI48_RS19060 0.14 -2.7 4,279,127 - HGI48_RS19060 0.14 -2.1 4,279,127 - HGI48_RS19060 0.14 +0.2 4,279,127 - HGI48_RS19060 0.14 -0.2 4,279,127 - HGI48_RS19060 0.14 +0.9 4,279,127 - HGI48_RS19060 0.14 +0.0 4,279,127 - HGI48_RS19060 0.14 -0.5 4,279,127 - HGI48_RS19060 0.14 -2.8 4,279,127 - HGI48_RS19060 0.14 -0.3 4,279,127 - HGI48_RS19060 0.14 +2.5 4,279,127 - HGI48_RS19060 0.14 +1.4 4,279,129 + HGI48_RS19060 0.14 -0.6 4,279,129 + HGI48_RS19060 0.14 -1.6 4,279,129 + HGI48_RS19060 0.14 -0.1 4,279,130 - HGI48_RS19060 0.14 -1.1 4,279,130 - HGI48_RS19060 0.14 -1.5 4,279,130 - HGI48_RS19060 0.14 -0.6 4,279,361 + HGI48_RS19060 0.27 -0.4 4,279,362 - HGI48_RS19060 0.27 -1.4 4,279,406 + HGI48_RS19060 0.29 +0.4 4,279,406 + HGI48_RS19060 0.29 +0.7 4,279,406 + HGI48_RS19060 0.29 -1.0 4,279,406 + HGI48_RS19060 0.29 -0.4 4,279,406 + HGI48_RS19060 0.29 -0.5 4,279,407 - HGI48_RS19060 0.29 -1.1 4,279,407 - +1.2 4,279,407 - HGI48_RS19060 0.29 +1.5 4,279,407 - +2.2 4,279,407 - HGI48_RS19060 0.29 -0.1
Or see this region's nucleotide sequence