Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS14965

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,368,679	-		HGI48_RS14955	0.13	+0.2
3,368,679	-		HGI48_RS14955	0.13	+0.2
3,368,691	+		HGI48_RS14955	0.16	-0.1
3,368,691	+		HGI48_RS14955	0.16	-1.4
3,368,691	+		HGI48_RS14955	0.16	+1.3
3,368,739	+		HGI48_RS14955	0.27	-1.1
3,368,739	+		HGI48_RS14955	0.27	+0.9
3,368,739	+		HGI48_RS14955	0.27	+0.8
3,368,740	-		HGI48_RS14955	0.27	+0.6
3,368,752	-		HGI48_RS14955	0.29	+0.1
3,368,752	-		HGI48_RS14955	0.29	-1.1
3,368,752	-		HGI48_RS14955	0.29	-0.6
3,368,801	+				-0.6
3,368,825	+		HGI48_RS14955	0.45	-0.3
3,368,851	+		HGI48_RS14955	0.51	-0.0
3,368,876	+		HGI48_RS14955	0.57	-0.2
3,368,877	-		HGI48_RS14955	0.57	+0.6
3,368,885	+		HGI48_RS14955	0.59	+0.9
3,368,886	-		HGI48_RS14955	0.59	-1.4
3,368,886	-		HGI48_RS14955	0.59	-1.1
3,368,902	+		HGI48_RS14955	0.62	+0.2
3,368,957	+				+2.2
3,368,957	+		HGI48_RS14955	0.74	+0.2
3,368,957	+				-0.1
3,368,957	+		HGI48_RS14955	0.74	-1.9
3,368,957	+		HGI48_RS14955	0.74	+0.5
3,368,957	+		HGI48_RS14955	0.74	+0.2
3,368,958	-		HGI48_RS14955	0.75	-0.1
3,368,965	+		HGI48_RS14955	0.76	+0.3
3,368,965	+		HGI48_RS14955	0.76	+0.3
3,368,965	+		HGI48_RS14955	0.76	-0.9
3,368,965	+				+0.4
3,368,965	+		HGI48_RS14955	0.76	+0.2
3,368,965	+		HGI48_RS14955	0.76	-0.1
3,368,965	+		HGI48_RS14955	0.76	+0.1
3,368,965	+		HGI48_RS14955	0.76	+0.4
3,368,966	-		HGI48_RS14955	0.76	-1.9
3,368,966	-		HGI48_RS14955	0.76	-0.1
3,368,966	-				+0.9
3,368,966	-		HGI48_RS14955	0.76	-0.4
3,368,966	-		HGI48_RS14955	0.76	+0.1
3,368,966	-		HGI48_RS14955	0.76	-1.1
3,368,966	-		HGI48_RS14955	0.76	+0.4
3,368,966	-		HGI48_RS14955	0.76	+1.5
3,368,966	-		HGI48_RS14955	0.76	-0.6
3,368,966	-		HGI48_RS14955	0.76	-2.6
3,368,966	-		HGI48_RS14955	0.76	+0.1
3,369,005	+		HGI48_RS14955	0.85	+0.1
3,369,005	+		HGI48_RS14955	0.85	-0.5
3,369,006	-		HGI48_RS14955	0.85	-1.1
3,369,083	+				+0.5
3,369,083	+				+0.4
3,369,083	+				-0.1
3,369,083	+				-2.2
3,369,084	-				+0.7
3,369,095	-				+0.4
3,369,095	-				-0.1
3,369,142	+		HGI48_RS14960	0.12	-0.4
3,369,142	+		HGI48_RS14960	0.12	-0.2
3,369,142	+		HGI48_RS14960	0.12	+1.4
3,369,142	+		HGI48_RS14960	0.12	-0.1
3,369,143	-		HGI48_RS14960	0.12	-0.6
3,369,143	-		HGI48_RS14960	0.12	+2.1
3,369,143	-		HGI48_RS14960	0.12	+0.3
3,369,143	-		HGI48_RS14960	0.12	-0.4
3,369,143	-				+0.4
3,369,143	-		HGI48_RS14960	0.12	-0.5
3,369,143	-		HGI48_RS14960	0.12	+1.3
3,369,143	-		HGI48_RS14960	0.12	-0.5
3,369,154	+		HGI48_RS14960	0.15	-1.1
3,369,155	-		HGI48_RS14960	0.15	-0.5
3,369,161	-		HGI48_RS14960	0.16	-0.2
3,369,161	-		HGI48_RS14960	0.16	-1.1
3,369,161	-		HGI48_RS14960	0.16	-1.2
3,369,222	-		HGI48_RS14960	0.29	+0.2
3,369,264	-		HGI48_RS14960	0.38	-1.4
3,369,264	-		HGI48_RS14960	0.38	+0.9
3,369,273	+		HGI48_RS14960	0.39	+0.8
3,369,274	-		HGI48_RS14960	0.40	-1.1
3,369,425	+		HGI48_RS14960	0.71	-1.4
3,369,425	+		HGI48_RS14960	0.71	+0.7
3,369,426	-				+0.4
3,369,576	+				-1.9
3,369,599	-				-0.1
3,369,601	+				+0.4
3,369,602	-				+0.7
3,369,700	+		HGI48_RS14965	0.28	-0.4
3,369,701	-		HGI48_RS14965	0.28	-0.4
3,369,701	-		HGI48_RS14965	0.28	-0.1
3,369,749	+		HGI48_RS14965	0.43	+0.1
3,369,777	-		HGI48_RS14965	0.51	-0.3
3,369,828	+				+0.4
3,369,828	+		HGI48_RS14965	0.66	-0.3
3,369,829	-		HGI48_RS14965	0.67	-0.1
3,369,840	+		HGI48_RS14965	0.70	-0.4
3,369,840	+				+0.9
3,369,841	-		HGI48_RS14965	0.70	-0.9
3,369,898	+		HGI48_RS14965	0.87	-0.5
3,369,899	-		HGI48_RS14965	0.88	-0.5
3,369,904	+		HGI48_RS14965	0.89	+0.8
3,369,905	-		HGI48_RS14965	0.89	+0.5
3,369,905	-		HGI48_RS14965	0.89	-0.6
3,369,905	-		HGI48_RS14965	0.89	+0.1
3,369,905	-		HGI48_RS14965	0.89	+0.5
3,369,959	-				+0.9
3,369,982	+		HGI48_RS14970	0.14	-1.2
3,370,068	-		HGI48_RS14970	0.53	-0.6
3,370,068	-		HGI48_RS14970	0.53	-1.5
3,370,068	-		HGI48_RS14970	0.53	+0.3
3,370,110	-		HGI48_RS14970	0.72	-0.4
3,370,137	+		HGI48_RS14970	0.84	-1.5
3,370,137	+		HGI48_RS14970	0.84	-1.1
3,370,156	-				+0.7
3,370,156	-				+0.3
3,370,171	-				-1.6
3,370,171	-				-1.1
3,370,171	-				-0.1
3,370,171	-				-1.1
3,370,176	-				-0.1
3,370,176	-				+0.6
3,370,178	+				+0.9
3,370,264	-		HGI48_RS14975	0.21	+0.2
3,370,267	+		HGI48_RS14975	0.22	-1.4
3,370,267	+		HGI48_RS14975	0.22	+1.2
3,370,267	+		HGI48_RS14975	0.22	-0.8
3,370,267	+		HGI48_RS14975	0.22	+0.3
3,370,267	+				+1.7
3,370,267	+		HGI48_RS14975	0.22	-0.6
3,370,267	+		HGI48_RS14975	0.22	+0.7
3,370,268	-		HGI48_RS14975	0.22	-1.1
3,370,268	-		HGI48_RS14975	0.22	-1.6
3,370,268	-		HGI48_RS14975	0.22	+0.5
3,370,268	-		HGI48_RS14975	0.22	+0.8
3,370,268	-		HGI48_RS14975	0.22	-2.6
3,370,268	-				+0.4
3,370,268	-		HGI48_RS14975	0.22	+0.9
3,370,271	+		HGI48_RS14975	0.23	+2.5
3,370,271	+		HGI48_RS14975	0.23	+0.4
3,370,309	+		HGI48_RS14975	0.34	+0.1
3,370,337	-		HGI48_RS14975	0.42	+1.1
3,370,337	-		HGI48_RS14975	0.42	-1.4
3,370,397	+		HGI48_RS14975	0.58	-0.3
3,370,397	+		HGI48_RS14975	0.58	-1.2
3,370,404	+		HGI48_RS14975	0.60	+1.6
3,370,404	+				+2.9
3,370,405	-		HGI48_RS14975	0.61	-1.5
3,370,405	-		HGI48_RS14975	0.61	+0.6
3,370,405	-		HGI48_RS14975	0.61	-0.3
3,370,407	+		HGI48_RS14975	0.61	-1.8
3,370,408	-				-0.1
3,370,470	+		HGI48_RS14975	0.79	+1.1
3,370,470	+		HGI48_RS14975	0.79	+0.4
3,370,470	+		HGI48_RS14975	0.79	-0.1
3,370,470	+		HGI48_RS14975	0.79	+1.3
3,370,470	+		HGI48_RS14975	0.79	-0.8
3,370,470	+		HGI48_RS14975	0.79	-0.4
3,370,471	-		HGI48_RS14975	0.79	+2.4
3,370,471	-				+0.4
3,370,471	-		HGI48_RS14975	0.79	-0.9
3,370,484	+		HGI48_RS14975	0.83	-0.0
3,370,485	-		HGI48_RS14975	0.83	+1.1
3,370,485	-		HGI48_RS14975	0.83	+0.6
3,370,485	-		HGI48_RS14975	0.83	+1.4
3,370,485	-		HGI48_RS14975	0.83	-1.9
3,370,498	-				-0.1
3,370,509	-				-0.4
3,370,569	-				-0.6
3,370,569	-				-0.9
3,370,569	-				-0.1
3,370,575	+				+0.4
3,370,575	+				-1.4
3,370,576	-				+0.6
3,370,576	-				+0.1
3,370,576	-				+0.5
3,370,589	+		HGI48_RS14980	0.12	+0.1
3,370,599	+		HGI48_RS14980	0.15	-0.9
3,370,611	-		HGI48_RS14980	0.19	-0.4
3,370,636	+		HGI48_RS14980	0.27	+0.5
3,370,637	-		HGI48_RS14980	0.27	-0.3
3,370,644	-		HGI48_RS14980	0.29	-0.4
3,370,663	+		HGI48_RS14980	0.35	-0.7
3,370,663	+		HGI48_RS14980	0.35	+0.4
3,370,664	-		HGI48_RS14980	0.35	-0.2
3,370,664	-		HGI48_RS14980	0.35	+0.3
3,370,664	-		HGI48_RS14980	0.35	-2.5
3,370,664	-				-0.1
3,370,702	+		HGI48_RS14980	0.47	-0.1
3,370,702	+		HGI48_RS14980	0.47	+0.7
3,370,703	-		HGI48_RS14980	0.47	-0.9
3,370,822	+		HGI48_RS14980	0.83	+0.4
3,370,822	+		HGI48_RS14980	0.83	+0.0
3,370,822	+		HGI48_RS14980	0.83	+0.4
3,370,822	+		HGI48_RS14980	0.83	-0.2
3,370,823	-		HGI48_RS14980	0.84	+1.8
3,370,823	-		HGI48_RS14980	0.84	-1.4
3,370,823	-		HGI48_RS14980	0.84	-1.6
3,370,884	+				-1.1
3,370,884	+				-0.2
3,370,885	-				+4.8
3,370,885	-				+1.7
3,370,910	-				-0.2