Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS14840

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,343,718	-				-0.4
3,343,718	-				+0.2
3,343,718	-				-1.1
3,343,905	+		HGI48_RS14835	0.24	+0.9
3,343,967	-		HGI48_RS14835	0.30	+0.6
3,344,080	-		HGI48_RS14835	0.41	-1.9
3,344,090	+		HGI48_RS14835	0.42	-1.5
3,344,090	+		HGI48_RS14835	0.42	+0.4
3,344,090	+				-0.6
3,344,090	+		HGI48_RS14835	0.42	+0.6
3,344,091	-		HGI48_RS14835	0.42	+0.0
3,344,091	-		HGI48_RS14835	0.42	-0.3
3,344,091	-		HGI48_RS14835	0.42	+1.8
3,344,152	+		HGI48_RS14835	0.48	+1.4
3,344,153	-		HGI48_RS14835	0.48	-0.9
3,344,168	-				+0.4
3,344,168	-		HGI48_RS14835	0.50	-0.4
3,344,277	+		HGI48_RS14835	0.60	-1.1
3,344,277	+		HGI48_RS14835	0.60	-1.5
3,344,278	-		HGI48_RS14835	0.60	+0.4
3,344,278	-		HGI48_RS14835	0.60	-0.8
3,344,281	+		HGI48_RS14835	0.60	+0.2
3,344,281	+		HGI48_RS14835	0.60	+0.6
3,344,282	-		HGI48_RS14835	0.60	+0.9
3,344,282	-		HGI48_RS14835	0.60	-0.1
3,344,282	-		HGI48_RS14835	0.60	+0.9
3,344,282	-		HGI48_RS14835	0.60	-0.9
3,344,282	-				-0.6
3,344,300	+		HGI48_RS14835	0.62	+0.1
3,344,301	-		HGI48_RS14835	0.62	+0.6
3,344,335	-		HGI48_RS14835	0.66	-0.5
3,344,335	-		HGI48_RS14835	0.66	+0.2
3,344,337	+				-0.6
3,344,391	+				-0.6
3,344,392	-		HGI48_RS14835	0.71	-1.4
3,344,433	+		HGI48_RS14835	0.75	-2.1
3,344,434	-		HGI48_RS14835	0.75	-0.1
3,344,448	+		HGI48_RS14835	0.76	-0.5
3,344,448	+		HGI48_RS14835	0.76	+2.2
3,344,448	+		HGI48_RS14835	0.76	-0.8
3,344,449	-		HGI48_RS14835	0.76	+0.9
3,344,449	-		HGI48_RS14835	0.76	-0.9
3,344,449	-		HGI48_RS14835	0.76	-0.3
3,344,461	-		HGI48_RS14835	0.78	+0.2
3,344,494	-		HGI48_RS14835	0.81	-2.1
3,344,500	+		HGI48_RS14835	0.81	-1.1
3,344,501	-		HGI48_RS14835	0.81	-2.1
3,344,501	-		HGI48_RS14835	0.81	+0.6
3,344,501	-		HGI48_RS14835	0.81	-2.1
3,344,501	-		HGI48_RS14835	0.81	-0.1
3,344,539	-		HGI48_RS14835	0.85	+0.6
3,344,596	+				+0.1
3,344,596	+				-0.1
3,344,596	+				-1.9
3,344,596	+				-1.1
3,344,596	+				-1.4
3,344,598	+				-0.6
3,344,599	-				-0.6
3,344,735	+				-0.6
3,344,804	-				+0.4
3,344,805	+				-1.1
3,344,805	+				+1.5
3,344,837	-				+1.5
3,344,898	-		HGI48_RS14840	0.10	+0.6
3,344,902	+		HGI48_RS14840	0.10	+0.5
3,344,931	-		HGI48_RS14840	0.12	+1.0
3,344,976	-		HGI48_RS14840	0.14	+0.6
3,345,032	+		HGI48_RS14840	0.17	-0.3
3,345,044	+		HGI48_RS14840	0.18	+0.8
3,345,045	-		HGI48_RS14840	0.18	-0.1
3,345,086	+		HGI48_RS14840	0.20	+0.6
3,345,096	-		HGI48_RS14840	0.21	-1.4
3,345,101	-		HGI48_RS14840	0.21	+0.9
3,345,101	-		HGI48_RS14840	0.21	+1.5
3,345,194	+		HGI48_RS14840	0.26	+0.5
3,345,195	-		HGI48_RS14840	0.26	+0.7
3,345,195	-		HGI48_RS14840	0.26	-0.2
3,345,197	-		HGI48_RS14840	0.26	-0.9
3,345,313	+		HGI48_RS14840	0.32	+0.1
3,345,313	+		HGI48_RS14840	0.32	-2.2
3,345,314	-		HGI48_RS14840	0.32	+0.3
3,345,321	-		HGI48_RS14840	0.33	+0.0
3,345,342	+		HGI48_RS14840	0.34	+1.7
3,345,457	+		HGI48_RS14840	0.40	-0.5
3,345,706	+		HGI48_RS14840	0.53	+2.2
3,345,747	-		HGI48_RS14840	0.55	+0.6
3,345,820	+		HGI48_RS14840	0.59	+1.7
3,346,015	+		HGI48_RS14840	0.70	+0.5
3,346,018	+		HGI48_RS14840	0.70	-1.4
3,346,019	-		HGI48_RS14840	0.70	+1.9
3,346,025	-		HGI48_RS14840	0.70	+0.5
3,346,398	+				+1.4
3,346,399	-		HGI48_RS14840	0.90	-1.3
3,346,403	+				-1.4
3,346,404	-				+1.4
3,346,466	-				-1.1
3,346,486	+				-0.6
3,346,582	-				+0.3
3,346,637	+				-0.3
3,346,689	-				+1.6
3,346,726	+				+0.3
3,346,730	+				-1.6
3,346,816	+		HGI48_RS14845	0.13	-1.4
3,346,856	+		HGI48_RS14845	0.15	-0.3
3,346,856	+		HGI48_RS14845	0.15	+0.5
3,346,881	-		HGI48_RS14845	0.17	-1.7
3,346,943	+		HGI48_RS14845	0.21	-0.6
3,347,030	-		HGI48_RS14845	0.26	-0.3
3,347,064	+		HGI48_RS14845	0.28	-1.6
3,347,065	-				-0.1
3,347,065	-				-0.6
3,347,075	-		HGI48_RS14845	0.29	-2.1
3,347,075	-		HGI48_RS14845	0.29	+0.1
3,347,127	-		HGI48_RS14845	0.32	+0.1
3,347,162	-				-0.1
3,347,174	+		HGI48_RS14845	0.35	-0.6
3,347,232	-		HGI48_RS14845	0.38	+0.7
3,347,262	-		HGI48_RS14845	0.40	+0.9
3,347,352	+		HGI48_RS14845	0.46	-1.1
3,347,352	+		HGI48_RS14845	0.46	-0.1
3,347,352	+		HGI48_RS14845	0.46	-1.8
3,347,352	+		HGI48_RS14845	0.46	-1.9
3,347,352	+		HGI48_RS14845	0.46	+1.3
3,347,352	+				+1.5
3,347,352	+		HGI48_RS14845	0.46	-1.1
3,347,353	-		HGI48_RS14845	0.46	-1.4
3,347,353	-		HGI48_RS14845	0.46	-0.4
3,347,353	-		HGI48_RS14845	0.46	-0.6
3,347,353	-		HGI48_RS14845	0.46	-2.0
3,347,353	-		HGI48_RS14845	0.46	-0.0
3,347,353	-		HGI48_RS14845	0.46	+0.2
3,347,353	-		HGI48_RS14845	0.46	+1.9
3,347,353	-		HGI48_RS14845	0.46	-1.1
3,347,357	-				+1.4
3,347,372	+		HGI48_RS14845	0.47	-0.5
3,347,372	+		HGI48_RS14845	0.47	+0.1
3,347,373	-		HGI48_RS14845	0.47	-1.4
3,347,408	+		HGI48_RS14845	0.49	-1.4
3,347,408	+		HGI48_RS14845	0.49	-2.4
3,347,409	-		HGI48_RS14845	0.49	-0.1
3,347,409	-		HGI48_RS14845	0.49	+0.4
3,347,409	-		HGI48_RS14845	0.49	-1.4
3,347,413	+		HGI48_RS14845	0.49	+1.1
3,347,473	+		HGI48_RS14845	0.53	-0.2
3,347,480	-		HGI48_RS14845	0.53	-0.4
3,347,536	+		HGI48_RS14845	0.57	-0.4
3,347,537	-		HGI48_RS14845	0.57	-2.2
3,347,567	+		HGI48_RS14845	0.59	+0.1
3,347,568	-		HGI48_RS14845	0.59	-0.6
3,347,576	+		HGI48_RS14845	0.59	-0.1
3,347,576	+		HGI48_RS14845	0.59	-0.4
3,347,576	+		HGI48_RS14845	0.59	+0.3
3,347,580	+		HGI48_RS14845	0.59	+0.2
3,347,580	+		HGI48_RS14845	0.59	-1.4
3,347,581	-		HGI48_RS14845	0.59	-0.3