Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13775

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,069,924	+		HGI48_RS13765	0.86	-0.8
3,069,938	+		HGI48_RS13765	0.87	+1.0
3,069,938	+				+0.8
3,070,086	-				+0.2
3,070,086	-				-1.8
3,070,097	+				-1.8
3,070,097	+				+0.2
3,070,097	+				+0.4
3,070,100	+				+0.8
3,070,100	+				+0.5
3,070,101	-				-0.1
3,070,101	-				+0.6
3,070,152	+				+0.0
3,070,153	-				-1.1
3,070,153	-				+0.0
3,070,162	+				+0.3
3,070,162	+				+1.5
3,070,163	-				-0.0
3,070,163	-				-1.5
3,070,163	-				+0.0
3,070,165	-				+0.2
3,070,251	-		HGI48_RS13770	0.19	-0.5
3,070,251	-		HGI48_RS13770	0.19	+0.5
3,070,253	-		HGI48_RS13770	0.19	-1.5
3,070,253	-		HGI48_RS13770	0.19	+0.4
3,070,253	-		HGI48_RS13770	0.19	-0.0
3,070,253	-				+0.2
3,070,255	+				+2.4
3,070,309	+		HGI48_RS13770	0.26	-1.5
3,070,309	+		HGI48_RS13770	0.26	-2.4
3,070,309	+		HGI48_RS13770	0.26	-0.4
3,070,310	-		HGI48_RS13770	0.27	+0.1
3,070,310	-		HGI48_RS13770	0.27	+0.2
3,070,388	+		HGI48_RS13770	0.37	-0.8
3,070,388	+				+0.8
3,070,389	-		HGI48_RS13770	0.37	-0.5
3,070,389	-		HGI48_RS13770	0.37	-0.1
3,070,389	-		HGI48_RS13770	0.37	+1.6
3,070,389	-		HGI48_RS13770	0.37	-2.5
3,070,389	-		HGI48_RS13770	0.37	+1.1
3,070,389	-		HGI48_RS13770	0.37	-0.0
3,070,389	-		HGI48_RS13770	0.37	-0.0
3,070,404	+		HGI48_RS13770	0.39	+0.5
3,070,404	+		HGI48_RS13770	0.39	-0.8
3,070,404	+		HGI48_RS13770	0.39	+0.8
3,070,405	-				-0.8
3,070,405	-		HGI48_RS13770	0.39	+0.6
3,070,406	+				+0.2
3,070,406	+		HGI48_RS13770	0.39	+0.8
3,070,406	+		HGI48_RS13770	0.39	-0.8
3,070,406	+		HGI48_RS13770	0.39	-0.2
3,070,407	-		HGI48_RS13770	0.39	-0.2
3,070,407	-		HGI48_RS13770	0.39	+0.4
3,070,407	-		HGI48_RS13770	0.39	-1.8
3,070,450	+		HGI48_RS13770	0.45	-0.2
3,070,450	+		HGI48_RS13770	0.45	-1.2
3,070,543	+		HGI48_RS13770	0.56	+0.8
3,070,543	+		HGI48_RS13770	0.56	+0.1
3,070,568	-				-0.2
3,070,587	+		HGI48_RS13770	0.62	+0.5
3,070,587	+		HGI48_RS13770	0.62	-1.8
3,070,587	+		HGI48_RS13770	0.62	-0.8
3,070,587	+		HGI48_RS13770	0.62	-0.2
3,070,587	+		HGI48_RS13770	0.62	-0.4
3,070,587	+				+1.2
3,070,587	+		HGI48_RS13770	0.62	+0.8
3,070,588	-		HGI48_RS13770	0.62	+0.5
3,070,588	-		HGI48_RS13770	0.62	-1.2
3,070,589	+		HGI48_RS13770	0.62	-1.0
3,070,589	+		HGI48_RS13770	0.62	-0.8
3,070,589	+		HGI48_RS13770	0.62	+0.2
3,070,589	+		HGI48_RS13770	0.62	+0.4
3,070,589	+		HGI48_RS13770	0.62	-1.1
3,070,654	-		HGI48_RS13770	0.71	+0.8
3,070,690	+		HGI48_RS13770	0.75	-1.2
3,070,691	-		HGI48_RS13770	0.76	+0.1
3,070,691	-				+1.5
3,070,732	-		HGI48_RS13770	0.81	+1.7
3,070,740	+		HGI48_RS13770	0.82	+0.8
3,070,740	+				+1.4
3,070,740	+		HGI48_RS13770	0.82	+1.1
3,070,741	-		HGI48_RS13770	0.82	-1.5
3,070,741	-		HGI48_RS13770	0.82	+0.3
3,070,741	-		HGI48_RS13770	0.82	-0.7
3,070,741	-		HGI48_RS13770	0.82	+0.0
3,070,742	+		HGI48_RS13770	0.82	-0.5
3,070,742	+		HGI48_RS13770	0.82	+0.4
3,070,742	+		HGI48_RS13770	0.82	-1.0
3,070,742	+		HGI48_RS13770	0.82	-1.5
3,070,742	+				+1.8
3,070,742	+		HGI48_RS13770	0.82	-1.4
3,070,742	+		HGI48_RS13770	0.82	-0.8
3,070,742	+		HGI48_RS13770	0.82	+0.5
3,070,743	-		HGI48_RS13770	0.82	-0.6
3,070,743	-		HGI48_RS13770	0.82	+0.1
3,070,743	-		HGI48_RS13770	0.82	+0.0
3,070,743	-		HGI48_RS13770	0.82	-0.2
3,070,795	+		HGI48_RS13770	0.89	-0.5
3,070,838	-				+0.3
3,070,863	+				+0.2
3,070,864	-				+0.6
3,071,003	+		HGI48_RS13775	0.16	+0.3
3,071,004	-		HGI48_RS13775	0.16	+0.0
3,071,032	+		HGI48_RS13775	0.20	-1.4
3,071,033	-		HGI48_RS13775	0.20	-0.4
3,071,034	+		HGI48_RS13775	0.20	-2.0
3,071,034	+		HGI48_RS13775	0.20	+1.4
3,071,065	+		HGI48_RS13775	0.24	+0.2
3,071,065	+		HGI48_RS13775	0.24	+0.1
3,071,065	+		HGI48_RS13775	0.24	+0.7
3,071,066	-		HGI48_RS13775	0.24	-0.3
3,071,066	-		HGI48_RS13775	0.24	-2.2
3,071,134	-		HGI48_RS13775	0.33	-0.2
3,071,244	+		HGI48_RS13775	0.48	-1.3
3,071,244	+		HGI48_RS13775	0.48	+0.7
3,071,244	+		HGI48_RS13775	0.48	+0.8
3,071,263	+		HGI48_RS13775	0.50	-1.5
3,071,264	-		HGI48_RS13775	0.51	+0.2
3,071,264	-		HGI48_RS13775	0.51	+0.5
3,071,264	-		HGI48_RS13775	0.51	+1.2
3,071,266	-		HGI48_RS13775	0.51	+0.5
3,071,284	+		HGI48_RS13775	0.53	-1.2
3,071,285	-		HGI48_RS13775	0.53	-0.5
3,071,285	-		HGI48_RS13775	0.53	-0.7
3,071,316	+		HGI48_RS13775	0.57	-0.3
3,071,316	+				+0.8
3,071,316	+		HGI48_RS13775	0.57	+0.8
3,071,317	-		HGI48_RS13775	0.58	-1.2
3,071,373	+		HGI48_RS13775	0.65	-0.2
3,071,373	+		HGI48_RS13775	0.65	+0.6
3,071,373	+		HGI48_RS13775	0.65	-0.7
3,071,373	+		HGI48_RS13775	0.65	-2.0
3,071,374	-		HGI48_RS13775	0.65	-0.2
3,071,374	-		HGI48_RS13775	0.65	+0.8
3,071,374	-		HGI48_RS13775	0.65	-0.8
3,071,374	-		HGI48_RS13775	0.65	+0.4
3,071,374	-		HGI48_RS13775	0.65	+0.5
3,071,377	+		HGI48_RS13775	0.66	-0.2
3,071,499	+		HGI48_RS13775	0.82	-1.5
3,071,499	+		HGI48_RS13775	0.82	-1.1
3,071,499	+		HGI48_RS13775	0.82	-0.4
3,071,499	+		HGI48_RS13775	0.82	-0.8
3,071,500	-		HGI48_RS13775	0.82	-0.5
3,071,500	-		HGI48_RS13775	0.82	-1.5
3,071,549	-		HGI48_RS13775	0.89	-0.4
3,071,549	-		HGI48_RS13775	0.89	-2.0
3,071,565	+				+0.3
3,071,565	+				+0.2
3,071,566	-				+1.2
3,071,566	-				+1.6
3,071,610	+				+2.1
3,071,611	-				-1.4
3,071,621	+				+2.3
3,071,622	-				+0.8
3,071,632	+				+0.8
3,071,633	-				-0.4
3,071,633	-				+1.4
3,071,637	-				+0.5
3,071,705	-				-1.5
3,071,746	+				-0.8
3,071,747	-				+1.1
3,071,768	+				+1.6
3,071,768	+				+0.5
3,071,768	+				-0.3
3,071,768	+				+0.8
3,071,830	-				-3.1
3,071,833	+				+1.6
3,071,834	-				-0.4
3,072,045	-		HGI48_RS13780	0.20	+0.5
3,072,071	+				+0.8
3,072,116	-		HGI48_RS13780	0.32	-0.0
3,072,120	-				+2.4
3,072,120	-		HGI48_RS13780	0.33	+0.3
3,072,121	+		HGI48_RS13780	0.33	-1.2
3,072,133	+		HGI48_RS13780	0.35	-1.5
3,072,135	+		HGI48_RS13780	0.35	-0.2
3,072,136	-		HGI48_RS13780	0.35	+0.1
3,072,212	+		HGI48_RS13780	0.48	+0.0
3,072,341	-		HGI48_RS13780	0.69	-0.0
3,072,456	-		HGI48_RS13780	0.88	-1.5
3,072,493	+				-0.2
3,072,592	+				-0.2