Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13430

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,943,915	+		HGI48_RS13425	0.28	+1.6
2,943,915	+		HGI48_RS13425	0.28	+0.5
2,943,915	+		HGI48_RS13425	0.28	+1.9
2,943,915	+		HGI48_RS13425	0.28	+1.3
2,943,915	+		HGI48_RS13425	0.28	-0.6
2,943,916	-		HGI48_RS13425	0.28	-0.7
2,943,988	+		HGI48_RS13425	0.33	+1.6
2,943,989	-		HGI48_RS13425	0.33	+0.7
2,944,063	+		HGI48_RS13425	0.38	+1.8
2,944,093	+		HGI48_RS13425	0.41	+1.5
2,944,094	-		HGI48_RS13425	0.41	-1.6
2,944,126	+		HGI48_RS13425	0.43	-0.2
2,944,126	+		HGI48_RS13425	0.43	-0.2
2,944,126	+		HGI48_RS13425	0.43	-0.7
2,944,126	+		HGI48_RS13425	0.43	+0.2
2,944,126	+		HGI48_RS13425	0.43	-1.4
2,944,127	-		HGI48_RS13425	0.43	+1.3
2,944,127	-		HGI48_RS13425	0.43	+1.8
2,944,127	-				-0.8
2,944,127	-		HGI48_RS13425	0.43	+2.5
2,944,140	+		HGI48_RS13425	0.44	+1.5
2,944,140	+				+0.2
2,944,140	+		HGI48_RS13425	0.44	+1.1
2,944,140	+		HGI48_RS13425	0.44	+0.1
2,944,140	+		HGI48_RS13425	0.44	+0.5
2,944,140	+		HGI48_RS13425	0.44	-1.4
2,944,141	-				+1.2
2,944,141	-		HGI48_RS13425	0.44	-2.0
2,944,141	-		HGI48_RS13425	0.44	+0.0
2,944,141	-		HGI48_RS13425	0.44	-0.4
2,944,141	-		HGI48_RS13425	0.44	+3.2
2,944,146	+		HGI48_RS13425	0.44	+1.0
2,944,146	+		HGI48_RS13425	0.44	-0.6
2,944,146	+		HGI48_RS13425	0.44	-0.7
2,944,146	+		HGI48_RS13425	0.44	+2.8
2,944,147	-		HGI48_RS13425	0.45	-0.2
2,944,286	+		HGI48_RS13425	0.55	+0.7
2,944,286	+		HGI48_RS13425	0.55	-0.2
2,944,287	-				+1.2
2,944,287	-		HGI48_RS13425	0.55	-0.0
2,944,287	-		HGI48_RS13425	0.55	-0.0
2,944,287	-		HGI48_RS13425	0.55	-0.6
2,944,291	+		HGI48_RS13425	0.55	+0.8
2,944,332	+		HGI48_RS13425	0.58	-2.2
2,944,332	+		HGI48_RS13425	0.58	+0.4
2,944,332	+		HGI48_RS13425	0.58	-1.2
2,944,332	+		HGI48_RS13425	0.58	+0.5
2,944,332	+		HGI48_RS13425	0.58	+0.8
2,944,332	+		HGI48_RS13425	0.58	-0.9
2,944,332	+		HGI48_RS13425	0.58	+2.0
2,944,332	+		HGI48_RS13425	0.58	+0.1
2,944,333	-		HGI48_RS13425	0.58	-0.2
2,944,333	-		HGI48_RS13425	0.58	+1.3
2,944,333	-				+1.8
2,944,333	-		HGI48_RS13425	0.58	-0.2
2,944,333	-		HGI48_RS13425	0.58	+0.9
2,944,333	-		HGI48_RS13425	0.58	-0.1
2,944,333	-		HGI48_RS13425	0.58	+0.0
2,944,333	-		HGI48_RS13425	0.58	+0.7
2,944,333	-		HGI48_RS13425	0.58	+1.2
2,944,333	-		HGI48_RS13425	0.58	+1.2
2,944,333	-		HGI48_RS13425	0.58	-0.6
2,944,333	-		HGI48_RS13425	0.58	+0.5
2,944,333	-		HGI48_RS13425	0.58	+2.1
2,944,343	-		HGI48_RS13425	0.59	+0.1
2,944,362	-		HGI48_RS13425	0.60	-1.8
2,944,478	-		HGI48_RS13425	0.69	-2.2
2,944,478	-		HGI48_RS13425	0.69	-0.5
2,944,508	+		HGI48_RS13425	0.71	+0.9
2,944,510	+		HGI48_RS13425	0.71	-0.1
2,944,511	-		HGI48_RS13425	0.71	-0.5
2,944,511	-				-0.2
2,944,582	+		HGI48_RS13425	0.76	+1.0
2,944,582	+		HGI48_RS13425	0.76	+0.8
2,944,582	+		HGI48_RS13425	0.76	+0.3
2,944,583	-		HGI48_RS13425	0.76	+0.8
2,944,583	-		HGI48_RS13425	0.76	-0.6
2,944,583	-		HGI48_RS13425	0.76	+0.3
2,944,583	-		HGI48_RS13425	0.76	-1.2
2,944,633	+		HGI48_RS13425	0.80	-0.8
2,944,634	-		HGI48_RS13425	0.80	-0.2
2,944,634	-		HGI48_RS13425	0.80	+1.8
2,944,645	+		HGI48_RS13425	0.81	+1.4
2,944,671	+		HGI48_RS13425	0.83	+0.4
2,944,672	-				+2.9
2,944,685	+		HGI48_RS13425	0.84	+0.7
2,944,685	+		HGI48_RS13425	0.84	-3.0
2,944,686	-		HGI48_RS13425	0.84	+1.2
2,944,724	+		HGI48_RS13425	0.87	+0.6
2,944,724	+				+1.5
2,944,747	+		HGI48_RS13425	0.88	+0.3
2,944,748	-		HGI48_RS13425	0.88	+1.3
2,944,760	+		HGI48_RS13425	0.89	-1.0
2,944,797	+				-0.5
2,944,797	+				+1.2
2,944,797	+				-0.3
2,944,797	+				+0.3
2,944,798	-				+0.0
2,944,798	-				+0.3
2,944,798	-				-0.4
2,944,929	+				+0.2
2,944,930	-				+1.0
2,944,930	-				-1.6
2,944,971	+				-0.2
2,944,998	-		HGI48_RS13430	0.19	-0.2
2,945,008	+		HGI48_RS13430	0.21	-0.8
2,945,008	+		HGI48_RS13430	0.21	+1.1
2,945,008	+		HGI48_RS13430	0.21	+0.2
2,945,008	+		HGI48_RS13430	0.21	+1.1
2,945,032	-		HGI48_RS13430	0.27	-0.2
2,945,042	+		HGI48_RS13430	0.29	+1.2
2,945,042	+		HGI48_RS13430	0.29	+0.3
2,945,043	-		HGI48_RS13430	0.29	+1.3
2,945,043	-		HGI48_RS13430	0.29	+0.4
2,945,043	-		HGI48_RS13430	0.29	+0.2
2,945,053	-		HGI48_RS13430	0.31	-1.0
2,945,095	-		HGI48_RS13430	0.41	-2.0
2,945,103	+		HGI48_RS13430	0.43	+1.6
2,945,104	-		HGI48_RS13430	0.43	+1.6
2,945,120	-		HGI48_RS13430	0.46	-0.0
2,945,174	+				+2.5
2,945,175	-		HGI48_RS13430	0.59	-0.5
2,945,177	+		HGI48_RS13430	0.59	-1.6
2,945,177	+		HGI48_RS13430	0.59	-0.1
2,945,178	-		HGI48_RS13430	0.60	+1.4
2,945,178	-		HGI48_RS13430	0.60	-1.1
2,945,247	+		HGI48_RS13430	0.75	+4.2
2,945,247	+				+0.8
2,945,248	-		HGI48_RS13430	0.76	+0.1
2,945,248	-		HGI48_RS13430	0.76	-0.5
2,945,250	+		HGI48_RS13430	0.76	-1.8
2,945,250	+		HGI48_RS13430	0.76	+0.4
2,945,251	-		HGI48_RS13430	0.76	+0.0
2,945,275	-		HGI48_RS13430	0.82	+1.8
2,945,353	+				-1.2
2,945,354	-				+1.2
2,945,354	-				-0.7
2,945,354	-				-0.8
2,945,354	-				+0.3
2,945,354	-				+0.3
2,945,354	-				-2.2
2,945,354	-				+0.3
2,945,354	-				-0.4
2,945,357	+				-0.8
2,945,357	+				-0.7
2,945,358	-				+0.2
2,945,358	-				-1.4
2,945,358	-				+0.1
2,945,358	-				+0.2
2,945,358	-				+1.1
2,945,428	+				-0.5
2,945,428	+				+2.1
2,945,428	+				-0.5
2,945,519	+		HGI48_RS13435	0.12	+1.7
2,945,519	+		HGI48_RS13435	0.12	-0.2
2,945,519	+		HGI48_RS13435	0.12	-1.0
2,945,520	-		HGI48_RS13435	0.12	+0.2
2,945,522	+		HGI48_RS13435	0.12	+0.3
2,945,522	+		HGI48_RS13435	0.12	+0.9
2,945,522	+		HGI48_RS13435	0.12	-1.0
2,945,522	+		HGI48_RS13435	0.12	-2.4
2,945,523	-		HGI48_RS13435	0.12	-0.5
2,945,523	-		HGI48_RS13435	0.12	-1.0
2,945,777	+		HGI48_RS13435	0.31	+1.3
2,945,777	+		HGI48_RS13435	0.31	-0.5
2,945,777	+		HGI48_RS13435	0.31	+1.1
2,945,777	+		HGI48_RS13435	0.31	-1.6
2,945,777	+		HGI48_RS13435	0.31	+0.3
2,945,777	+		HGI48_RS13435	0.31	+0.1
2,945,777	+		HGI48_RS13435	0.31	+0.3
2,945,777	+		HGI48_RS13435	0.31	+0.3
2,945,778	-		HGI48_RS13435	0.32	-1.2
2,945,778	-		HGI48_RS13435	0.32	-0.4
2,945,778	-		HGI48_RS13435	0.32	-0.2
2,945,778	-		HGI48_RS13435	0.32	+0.5
2,945,900	+		HGI48_RS13435	0.41	+0.5
2,945,900	+		HGI48_RS13435	0.41	+1.2
2,945,901	-		HGI48_RS13435	0.41	+0.9
2,945,933	+		HGI48_RS13435	0.43	-2.2
2,945,960	+		HGI48_RS13435	0.45	-0.1
2,945,961	-		HGI48_RS13435	0.45	-1.2
2,945,964	-		HGI48_RS13435	0.45	+0.6
2,945,984	+		HGI48_RS13435	0.47	+0.1
2,945,985	-		HGI48_RS13435	0.47	+1.0
2,945,985	-				+3.2
2,945,985	-		HGI48_RS13435	0.47	+1.5
2,945,987	+		HGI48_RS13435	0.47	-0.2
2,945,987	+		HGI48_RS13435	0.47	+1.2
2,945,988	-		HGI48_RS13435	0.47	+1.4
2,945,988	-		HGI48_RS13435	0.47	+0.0
2,946,010	+		HGI48_RS13435	0.49	+0.6
2,946,011	-		HGI48_RS13435	0.49	-1.2
2,946,018	-		HGI48_RS13435	0.50	+0.8
2,946,057	-		HGI48_RS13435	0.52	-1.8
2,946,057	-		HGI48_RS13435	0.52	+0.3
2,946,057	-		HGI48_RS13435	0.52	+1.1
2,946,209	-		HGI48_RS13435	0.64	-1.7
2,946,209	-		HGI48_RS13435	0.64	-1.2
2,946,332	-		HGI48_RS13435	0.73	+2.6